FvH4_6g17080

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
11038954 .. 11041077
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17080.t1

Sequence Viewer

Length: 1503 bp
ATGGCTTCACAAGCCAGGAACCAGGAGCAGCCTCACTTTGTCCTGATGCCACTCATGGCACAAGGGCATATGATCCCCATGATAGACATGGCTAGGCTCTTCGCAGAGCGCGGTGTGATGGTTAGCTTAGTCACCACTCCATACAATGCCTCAAGATTTGAGTCATGCATTTCTCGAGCAAGAGATCAATCCAGGCTTCCAATATCCATTGTGAAAATCCCATTTCCAAGCCAAGAAGTGGGACTTCCAATGGAGAGTGAGAGTCTTGACACTTTACCATCTCGAACTCTGTTGAGGAGGTTTTTTAAGGCTCTTAGCATGCTGCAGGAACCACTAGAAAAGTACCTTGAAGACCAGAAGATTAAGCCATGGTGCATAATCTCGGACAAGGCCCTCTCGTGGACTTCAAAAACAGCTCAGAAGTTCAACATTCCAAGGATTGTTTTCCATGGAATGTGCTGCTTCTCACTGCTGAGCTCTCACAATATCAAACTCCATAATGCCCACACTTCTGTTGCTTCTGACTTTGAACCTTTTGTGGTGCCAGGGTTGCCCCACAGGATTGAGATCACTAAGGCTCAGCTACCAGGAGCATTTGTCCCGCAACCCGATTTGGATGATTTCAGGGAAAAGAATAAAGAGGCTGAAGCAAAATGTTATGGTGTGGTGGTGAATAGCTTTAATGCACTTGAACATGGGTGTGCTGAGGAGTTGGAGAAGGTGCTTGATAAAAAGGTTTGGTGCATTGGACCAGTTTATTTATGCAACAAGAGAAATTCAGATAGGATTTCTAGAGGTAACAAATCATCAATTGATGAGACACAATGCTTGCAATGGCTGGAATCAATGGAACCAAGGTCTGTCATCTATGCTTGTCTTGGTAGCCTTTGTAGACTAGTCCCAGCACAACTGATGGAGCTTGGACTAGGCTTAGAAGCATCAGGAAAACCCTTTATCTGGGTAGTCAAAACATGTGCAGAGTATGAAGAATTGGAGAAGTGGTTAGTGGAGGAGAGGTTTGAGGAAAGGATCAAAGGAAGAGGCCTTTTGATAAAAGGTTGGGCTCCCCAAGTTCTTATTCTCTCAAGTCCAGCAATTGGAGGGTTCTTAACTCATTGTGGTTGGAACTCCAGCATAGAAGGGGCATGTTCTGGTGTGCCAATGATCACATGGCCTCTATTCGCCGAGCAATTCCTAAACGAAAAAATGATCGTGGAGGTTTTAAAGATCGGTGTTCGGGTTGGTGTGGAGATTCCTGTTAGATGGGGGGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGGGGTCAAGAGAGCAATAGAAGCACTAATGGATGGAGGTGAAGAAGGAGAAAAGAGAAGAAACAGAGCAAGAGAAATTAAAGAGAAGGGTAGAAGAGCCATGGAAAAAGGAGGGTCATCTCACTCAAATATTTCTACTTTGATTAAAGATGTTATGGAGTTGCATGAATTCACCCAAAACAAAGGTCAGAAGCTGTAA

Protein Analysis

501

Amino Acids

56.38

Weight (kDa)

8.12

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 252 1.1e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 282 - 406 6.9e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AccB7I CCANNNNNTGG 2 cut(s) 238, 1097
AccI GTMKAC 1 cut(s) 892
AccII CGCG 1 cut(s) 111
AciI CCGC 2 cut(s) 111, 602
AclWI GGATC 2 cut(s) 67, 1037
AcsI RAATTY 2 cut(s) 775, 1472
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 4 cut(s) 238, 399, 957, 1097
AflIII ACRYGT 1 cut(s) 971
AgsI TTSAA 5 cut(s) 350, 408, 427, 530, 692
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 5 cut(s) 14, 21, 191, 544, 586
AjuI GAANNNNNNNTTGG 4 cut(s) 1062, 1094, 1266, 1298
AluBI AGCT 7 cut(s) 126, 416, 477, 583, 678, 919, 1498
AluI AGCT 7 cut(s) 126, 416, 477, 583, 678, 919, 1498
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 812
AlwI GGATC 2 cut(s) 67, 1037
AlwNI CAGNNNCTG 1 cut(s) 1498
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 3 cut(s) 390, 1042, 1172
ApeKI GCWGC 3 cut(s) 28, 322, 459
ApoI RAATTY 2 cut(s) 775, 1472
ArsI GACNNNNNNTTYG 1 cut(s) 1474
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 391, 749
AsuHPI GGTGA 5 cut(s) 124, 682, 1306, 1355, 1468
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 749
BanI GGYRCC 1 cut(s) 541
BanII GRGCYC 2 cut(s) 479, 1066
BauI CACGAG 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 479
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 40, 309, 446
BccI CCATC 6 cut(s) 112, 286, 907, 1257, 1298, 1331
BciT130I CCWGG 5 cut(s) 16, 23, 193, 546, 588
BclI TGATCA 1 cut(s) 1164
BcoDI GTCTC 1 cut(s) 812
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 5 cut(s) 93, 335, 792, 896, 926
BfmI CTRYAG 1 cut(s) 323
BisI GCNGC 3 cut(s) 29, 323, 460
BlpI GCTNAGC 2 cut(s) 473, 579
BlsI GCNGC 3 cut(s) 30, 324, 461
Bme1390I CCNGG 5 cut(s) 16, 23, 193, 546, 588
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 391, 749
BmiI GGNNCC 5 cut(s) 20, 330, 543, 852, 1065
BmrFI CCNGG 5 cut(s) 16, 23, 193, 546, 588
BmsI GCATC 2 cut(s) 36, 947
BpiI GAAGAC 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 1114
Bpu10I CCTNAGC 1 cut(s) 705
Bpu1102I GCTNAGC 2 cut(s) 473, 579
BpuEI CTTGAG 2 cut(s) 136, 1069
BsaBI GATNNNNATC 1 cut(s) 566
BsaJI CCNNGG 6 cut(s) 368, 434, 448, 545, 854, 1404
BsaXI ACNNNNNCTCC 8 cut(s) 582, 612, 986, 1001, 1016, 1031, 1278, 1308
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 399, 957, 1097
Bse1I ACTGG 1 cut(s) 752
Bse3DI GCAATG 1 cut(s) 839
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 5 cut(s) 16, 23, 193, 546, 588
BseDI CCNNGG 6 cut(s) 368, 434, 448, 545, 854, 1404
BseGI GGATG 3 cut(s) 622, 1276, 1342
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 4 cut(s) 238, 399, 957, 1097
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 4 cut(s) 431, 464, 593, 696
BseNI ACTGG 1 cut(s) 752
BseRI GAGGAG 3 cut(s) 310, 722, 1025
BseXI GCAGC 3 cut(s) 40, 309, 446
BseYI CCCAGC 1 cut(s) 901
BsgI GTGCAG 1 cut(s) 996
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 392, 1044, 1174
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 174
BslFI GGGAC 3 cut(s) 255, 584, 884
BslI CCNNNNNNNGG 4 cut(s) 238, 399, 957, 1097
BsmAI GTCTC 1 cut(s) 812
BsmFI GGGAC 3 cut(s) 255, 584, 884
BsnI GGCC 3 cut(s) 392, 1044, 1174
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 479, 1066
Bsp143I GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
Bsp1720I GCTNAGC 2 cut(s) 473, 579
Bsp19I CCATGG 3 cut(s) 368, 448, 1404
BspACI CCGC 2 cut(s) 111, 602
BspANI GGCC 3 cut(s) 392, 1044, 1174
BspCNI CTCAG 4 cut(s) 430, 465, 592, 697
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 5 cut(s) 20, 330, 543, 852, 1065
BspMAI CTGCAG 1 cut(s) 327
BspPI GGATC 2 cut(s) 67, 1037
BspQI GCTCTTC 2 cut(s) 104, 1393
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 839
BsrI ACTGG 1 cut(s) 752
BssECI CCNNGG 6 cut(s) 368, 434, 448, 545, 854, 1404
BssMI GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
BssSI CACGAG 1 cut(s) 397
BssT1I CCWWGG 5 cut(s) 368, 434, 448, 854, 1404
Bst2BI CACGAG 1 cut(s) 397
Bst2UI CCWGG 5 cut(s) 16, 23, 193, 546, 588
Bst6I CTCTTC 4 cut(s) 104, 1033, 1269, 1393
BstC8I GCNNGC 2 cut(s) 320, 830
BstDEI CTNAG 8 cut(s) 127, 314, 417, 473, 573, 579, 705, 931
BstDSI CCRYGG 3 cut(s) 368, 448, 1404
BstF5I GGATG 3 cut(s) 622, 1276, 1342
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 7 cut(s) 75, 187, 570, 1032, 1167, 1212, 1230
BstMAI GTCTC 1 cut(s) 812
BstMBI GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
BstMWI GCNNNNNNNGC 3 cut(s) 11, 550, 1325
BstNI CCWGG 5 cut(s) 16, 23, 193, 546, 588
BstNSI RCATGY 3 cut(s) 322, 975, 1149
BstSCI CCNGG 5 cut(s) 14, 21, 191, 544, 586
BstSFI CTRYAG 1 cut(s) 323
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 40, 309, 446
BstV2I GAAGAC 1 cut(s) 357
BsuRI GGCC 3 cut(s) 392, 1044, 1174
BtgI CCRYGG 3 cut(s) 368, 448, 1404
BtsCI GGATG 3 cut(s) 622, 1276, 1342
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 2 cut(s) 320, 830
CaiI CAGNNNCTG 1 cut(s) 1498
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 391, 749
Csp6I GTAC 1 cut(s) 343
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 8 cut(s) 127, 314, 417, 473, 573, 579, 705, 931
DpnI GATC 7 cut(s) 74, 186, 569, 1031, 1166, 1211, 1229
DpnII GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
DraI TTTAAA 1 cut(s) 1224
Eam1104I CTCTTC 4 cut(s) 104, 1033, 1269, 1393
EarI CTCTTC 4 cut(s) 104, 1033, 1269, 1393
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 5 cut(s) 368, 434, 448, 854, 1404
Eco147I AGGCCT 1 cut(s) 1044
Eco24I GRGCYC 2 cut(s) 479, 1066
Eco47I GGWCC 1 cut(s) 749
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 1472
EcoRII CCWGG 5 cut(s) 14, 21, 191, 544, 586
EcoT14I CCWWGG 5 cut(s) 368, 434, 448, 854, 1404
EcoT22I ATGCAT 1 cut(s) 170
EcoT38I GRGCYC 2 cut(s) 479, 1066
ErhI CCWWGG 5 cut(s) 368, 434, 448, 854, 1404
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 3 cut(s) 255, 584, 884
FauI CCCGC 1 cut(s) 609
FauNDI CATATG 1 cut(s) 69
FbaI TGATCA 1 cut(s) 1164
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 3 cut(s) 29, 323, 460
FokI GGATG 3 cut(s) 629, 1283, 1349
FriOI GRGCYC 2 cut(s) 479, 1066
Fsp4HI GCNGC 3 cut(s) 29, 323, 460
FspBI CTAG 5 cut(s) 93, 335, 792, 896, 926
GlaI GCGC 1 cut(s) 110
GluI GCNGC 3 cut(s) 29, 323, 460
GsaI CCCAGC 1 cut(s) 905
GsuI CTGGAG 1 cut(s) 1114
HaeIII GGCC 3 cut(s) 392, 1044, 1174
HhaI GCGC 1 cut(s) 111
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 4 cut(s) 161, 262, 842, 1252
HphI GGTGA 5 cut(s) 124, 682, 1306, 1355, 1468
Hpy166II GTNNAC 2 cut(s) 402, 893
Hpy188I TCNGA 5 cut(s) 385, 420, 523, 781, 1494
Hpy188III TCNNGA 8 cut(s) 43, 153, 174, 266, 282, 792, 942, 1312
Hpy8I GTNNAC 2 cut(s) 402, 893
HpyAV CCTTC 4 cut(s) 712, 1133, 1343, 1384
HpyCH4V TGCA 9 cut(s) 168, 325, 375, 686, 744, 765, 832, 977, 1468
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 550, 1325
HpyF3I CTNAG 8 cut(s) 127, 314, 417, 473, 573, 579, 705, 931
HspAI GCGC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 1164
Kzo9I GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
LguI GCTCTTC 2 cut(s) 104, 1393
LmnI GCTCC 4 cut(s) 25, 590, 916, 1069
Lsp1109I GCAGC 3 cut(s) 40, 309, 446
LweI GCATC 2 cut(s) 36, 947
MaeI CTAG 5 cut(s) 93, 335, 792, 896, 926
MaeIII GTNAC 2 cut(s) 130, 797
MalI GATC 7 cut(s) 74, 186, 569, 1031, 1166, 1211, 1229
MboI GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
MfeI CAATTG 2 cut(s) 810, 1095
MhlI GDGCHC 2 cut(s) 479, 1066
MluCI AATT 7 cut(s) 775, 810, 989, 1095, 1190, 1380, 1472
MlyI GAGTC 2 cut(s) 170, 271
MmeI TCCRAC 3 cut(s) 693, 1103, 1264
Mph1103I ATGCAT 1 cut(s) 170
MseI TTAA 7 cut(s) 306, 363, 681, 1109, 1223, 1383, 1449
MslI CAYNNNNRTG 1 cut(s) 699
MspR9I CCNGG 5 cut(s) 16, 23, 193, 546, 588
MunI CAATTG 2 cut(s) 810, 1095
MvaI CCWGG 5 cut(s) 16, 23, 193, 546, 588
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 11, 550, 1325
NcoI CCATGG 3 cut(s) 368, 448, 1404
NdeI CATATG 1 cut(s) 69
NdeII GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
NlaIV GGNNCC 5 cut(s) 20, 330, 543, 852, 1065
NmeAIII GCCGAG 1 cut(s) 1210
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 170
NspI RCATGY 3 cut(s) 322, 975, 1149
PaeI GCATGC 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 174
PceI AGGCCT 1 cut(s) 1044
PciI ACATGT 1 cut(s) 971
PciSI GCTCTTC 2 cut(s) 104, 1393
PfeI GAWTC 2 cut(s) 842, 1252
PflMI CCANNNNNTGG 2 cut(s) 238, 1097
PkrI GCNGC 3 cut(s) 30, 324, 461
PleI GAGTC 2 cut(s) 169, 270
PpsI GAGTC 2 cut(s) 169, 270
PscI ACATGT 1 cut(s) 971
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 5 cut(s) 14, 21, 191, 544, 586
PspFI CCCAGC 1 cut(s) 901
PspGI CCWGG 5 cut(s) 14, 21, 191, 544, 586
PspN4I GGNNCC 5 cut(s) 20, 330, 543, 852, 1065
PspPI GGNCC 2 cut(s) 391, 749
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 1498
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 699
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 2 cut(s) 104, 1393
SaqAI TTAA 7 cut(s) 306, 363, 681, 1109, 1223, 1383, 1449
SatI GCNGC 3 cut(s) 29, 323, 460
Sau3AI GATC 7 cut(s) 72, 184, 567, 1029, 1164, 1209, 1227
Sau96I GGNCC 2 cut(s) 391, 749
SchI GAGTC 2 cut(s) 170, 271
ScrFI CCNGG 5 cut(s) 16, 23, 193, 546, 588
SduI GDGCHC 2 cut(s) 479, 1066
SfaNI GCATC 2 cut(s) 36, 947
SfcI CTRYAG 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 3 cut(s) 151, 174, 1084
SmoI CTYRAG 3 cut(s) 151, 174, 1084
SpeI ACTAGT 1 cut(s) 895
SphI GCATGC 1 cut(s) 322
Sse9I AATT 7 cut(s) 775, 810, 989, 1095, 1190, 1380, 1472
SseBI AGGCCT 1 cut(s) 1044
SsiI CCGC 2 cut(s) 111, 602
SspI AATATT 1 cut(s) 1435
SspMI CTAG 5 cut(s) 93, 335, 792, 896, 926
SstI GAGCTC 1 cut(s) 479
StuI AGGCCT 1 cut(s) 1044
StyD4I CCNGG 5 cut(s) 14, 21, 191, 544, 586
StyI CCWWGG 5 cut(s) 368, 434, 448, 854, 1404
TaqI TCGA 2 cut(s) 175, 283
TasI AATT 7 cut(s) 775, 810, 989, 1095, 1190, 1380, 1472
TfiI GAWTC 2 cut(s) 842, 1252
Tru1I TTAA 7 cut(s) 306, 363, 681, 1109, 1223, 1383, 1449
Tru9I TTAA 7 cut(s) 306, 363, 681, 1109, 1223, 1383, 1449
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 3 cut(s) 28, 322, 459
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 999, 1287, 1485
TspRI CASTG 1 cut(s) 474
Van91I CCANNNNNTGG 2 cut(s) 238, 1097
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 2 cut(s) 775, 1472
XbaI TCTAGA 1 cut(s) 791
XceI RCATGY 3 cut(s) 322, 975, 1149
XcmI CCANNNNNNNNNTGG 2 cut(s) 85, 1167
XhoI CTCGAG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 892
XspI CTAG 5 cut(s) 93, 335, 792, 896, 926
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.