Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Reverse (-)

32763377 .. 32763982

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG269800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCACAAGGGCATATGATTCCCATGATAGACATGGCTAGGCTCTTCGCAGAGTGGGGTGTCATGGTTAGCTTGGTCACCACTCCATACAATGCCTCAAGATTTGAGTCATGCATTTCTCGAGCAAGAGATCAATTCGAACTTCCAATATCCATTGTGAAAATCCCATTTCCGTGCCAAGAAGTGGGACTTCCAATGGGGAGTGAGAGTCTTGACACCTTACCATCTCGAAATCTGCTGAGGAAGTTCTTTAAGGCTCTGAGCATGCTGCAAGAACCACAAGAAAAGTACCTTGAAGACCAGAAGCTTCAGCCATGGTGCATAATCTCGGACAAGGCCCTCTCGTGGACTTCAAAAATAGCTCAGAAGTTCAATATTCCAAGGATTGTTTTCCATGGAATGTGCTGCTTCTCACTGTTGAGCTCTCACAACATCAAACTCTATAATGCTCACAATTCTGTTACTTCTGATTTTGAACCTTTTGTGGTGCCAGGGCTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

167

Amino Acids

19.01

Weight (kDa)

7.66

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	487
AccB7I	CCANNNNNTGG	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	184, 345
AgsI	TTSAA	4 cut(s)	296, 354, 373, 476
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	4 cut(s)	72, 307, 362, 423
AluI	AGCT	4 cut(s)	72, 307, 362, 423
Alw21I	GWGCWC	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	3 cut(s)	268, 405, 496
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	255, 392, 483
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	492
BfaI	CTAG	2 cut(s)	39, 502
BisI	GCNGC	3 cut(s)	269, 406, 497
BlsI	GCNGC	3 cut(s)	270, 407, 498
Bme1390I	CCNGG	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	82
BsaJI	CCNNGG	4 cut(s)	314, 380, 394, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 345
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	4 cut(s)	314, 380, 394, 491
BseLI	CCNNNNNNNGG	2 cut(s)	184, 345
BseMII	CTCAG	3 cut(s)	230, 251, 377
BseXI	GCAGC	3 cut(s)	255, 392, 483
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	184, 345
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	130
Bsp19I	CCATGG	2 cut(s)	314, 394
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	3 cut(s)	231, 252, 376
BspLI	GGNNCC	1 cut(s)	489
BspQI	GCTCTTC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	487
BssECI	CCNNGG	4 cut(s)	314, 380, 394, 491
BssMI	GATC	1 cut(s)	130
BssSI	CACGAG	1 cut(s)	343
BssT1I	CCWWGG	3 cut(s)	314, 380, 394
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	239, 260, 363
BstDSI	CCRYGG	2 cut(s)	314, 394
BstEII	GGTNACC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	268
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	255, 392, 483
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	2 cut(s)	314, 394
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	7 cut(s)	25, 34, 64, 111, 265, 315, 395
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	239, 260, 363
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	3 cut(s)	314, 380, 394
Eco24I	GRGCYC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	3 cut(s)	314, 380, 394
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	3 cut(s)	314, 380, 394
FaeI	CATG	7 cut(s)	28, 37, 67, 114, 268, 318, 398
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	7 cut(s)	24, 33, 63, 110, 264, 314, 394
FauNDI	CATATG	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	269, 406, 497
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	3 cut(s)	269, 406, 497
FspBI	CTAG	2 cut(s)	39, 502
GluI	GCNGC	3 cut(s)	269, 406, 497
HaeIII	GGCC	1 cut(s)	338
Hin1II	CATG	7 cut(s)	28, 37, 67, 114, 268, 318, 398
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	19, 107, 208
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	4 cut(s)	261, 331, 366, 469
Hpy188III	TCNNGA	4 cut(s)	99, 120, 212, 228
Hpy8I	GTNNAC	1 cut(s)	348
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	114, 271, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	3 cut(s)	239, 260, 363
Hsp92II	CATG	7 cut(s)	28, 37, 67, 114, 268, 318, 398
Kzo9I	GATC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	50
LpnPI	CCDG	2 cut(s)	314, 477
Lsp1109I	GCAGC	3 cut(s)	255, 392, 483
MaeI	CTAG	2 cut(s)	39, 502
MaeIII	GTNAC	2 cut(s)	76, 460
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	37, 308
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	2 cut(s)	134, 454
MlyI	GAGTC	2 cut(s)	116, 217
MnlI	CCTC	3 cut(s)	106, 234, 350
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	496
NcoI	CCATGG	2 cut(s)	314, 394
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	7 cut(s)	28, 37, 67, 114, 268, 318, 398
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	270, 407, 498
PleI	GAGTC	2 cut(s)	115, 216
PpsI	GAGTC	2 cut(s)	115, 216
Psp124BI	GAGCTC	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	490
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	337
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	425
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	269, 406, 497
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	2 cut(s)	116, 217
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	7 cut(s)	74, 221, 294, 309, 364, 425, 481
Sfr274I	CTCGAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	172
SmlI	CTYRAG	2 cut(s)	97, 120
SmoI	CTYRAG	2 cut(s)	97, 120
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	2 cut(s)	134, 454
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	39, 502
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	3 cut(s)	314, 380, 394
TaaI	ACNGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	121, 138, 229
TasI	AATT	2 cut(s)	134, 454
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	3 cut(s)	268, 405, 496
Tsp45I	GTSAC	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	420
Van91I	CCANNNNNTGG	1 cut(s)	184
XceI	RCATGY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	2 cut(s)	39, 502
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.