Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Forward (+)

17021347 .. 17026820

Gene Structure 5474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTTCACAAGCCAGGCAAAAGGAGCAACCTCACTTTGTCTTAGTGCCTCTTATGGCACAAGGGCATATGATTCCCATGATAGACATAGCTAGGCTCTTTGCAGAGCCTGGTGTGATTGTTAGCTTGGTCACCACTCCATACAAGGCCTCAAGATTTGAGTCATGCATTTCTCGAGCAAGAGATCAATCCGGACTTCCAATATCCATTGTGAAAATCTCATTTTCGTGCCAAGAAGTGGGACTTCCAATGGGGAGTGAGAGTCTTGACACCTTACTATCTCGAAATCTGCTGAGGAAGTTCTTTAAGGCTCTGAGCATGCTGCAAGAACCACTAGAAAAGTACCTTGAAGACCAGAAGCTTCAGCCATGGTGCATAATCTCGGACAAGGCCCTCTCGTGGACTTCAAAATTAAAACAGCTCAGAAGTTCAATATTCCAAGGATTGTTTTCCATGGAATCGAAATCGTTTGGGGTGGTGGTGAATAGCTTTAATGCACTTGAACTTGGGTGTGCTGAGGAGTTGGAGAAGGTGTTTGATAAAAAGGTTTGGTGCATTGGACTAGTTTCCTTATGCTACAAGAGCTATTCAGAAAAATTTTCTAGAGGTAACAAATCCTCAATTGATGAGAGTCAATGCTTGCAATGGCTTGAATCAATGCAACCAAGGTCTGTCATCTACGTTTGTCTTGGTAGCCTTTGTAGATTAGTCCCATCAACTGATAGAGCTTGGACTAGGCTTAGAAGCCTCAGGAAAACTCTTTATCTGGTGGAGGAGAGGTTTAAGGAAAGGATCACAGGAAGAGGCCTTTTGATCAAGGGTTGGGCTCCCCAAGTTCTTATTCTCTCAAGTCCAGTAATTGGAGGGTTCTTAACTCATTGTGGTTGGAACTCAAGCATAGAAGGGGCATGTTCTGAAAGTTGGAGTGTTGGTGAAGAAAGATGGGGTGAAGAAGGCAATACGTTTGGAGGTGAAGAAGGAGAAAAGAGAAGAAAGAGAGCAACAGAAATTGGAGAGAAGGGAAGAAGAGCAATGGAACAAGGAGGTTCATCGCACTCAAGCATGTCTTATTTGATTCAAGATGTTAGGCAATTATATGAAGCCACTCGAAACAAAGGTCAGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

376

Amino Acids

42.42

Weight (kDa)

9.04

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	238, 860
AccIII	TCCGGA	1 cut(s)	191
AclWI	GGATC	1 cut(s)	800
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	238, 399, 860
AgsI	TTSAA	6 cut(s)	350, 408, 432, 503, 653, 1079
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	14, 109
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
AluBI	AGCT	8 cut(s)	92, 126, 361, 421, 489, 585, 728, 1126
AluI	AGCT	8 cut(s)	92, 126, 361, 421, 489, 585, 728, 1126
AlwI	GGATC	1 cut(s)	800
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	3 cut(s)	147, 390, 805
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	1 cut(s)	1102
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	5 cut(s)	124, 493, 944, 959, 983
AvaI	CYCGRG	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	829
BauI	CACGAG	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	357
BbvCI	CCTCAGC	2 cut(s)	293, 516
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	721, 936
BciT130I	CCWGG	2 cut(s)	16, 111
BclI	TGATCA	1 cut(s)	813
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	5 cut(s)	93, 335, 563, 603, 735
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	16, 111
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	828
BmrFI	CCNGG	2 cut(s)	16, 111
BpiI	GAAGAC	1 cut(s)	357
Bpu10I	CCTNAGC	2 cut(s)	293, 516
BpuEI	CTTGAG	4 cut(s)	136, 832, 877, 1042
BsaJI	CCNNGG	4 cut(s)	368, 439, 453, 665
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	8 cut(s)	247, 277, 518, 548, 764, 794, 916, 946
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 399, 860
Bse1I	ACTGG	1 cut(s)	854
Bse21I	CCTNAGG	1 cut(s)	749
Bse3DI	GCAATG	2 cut(s)	650, 1038
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	16, 111
BseDI	CCNNGG	4 cut(s)	368, 439, 453, 665
BseLI	CCNNNNNNNGG	3 cut(s)	238, 399, 860
BseMI	GCAATG	2 cut(s)	650, 1038
BseMII	CTCAG	5 cut(s)	284, 305, 436, 507, 763
BseNI	ACTGG	1 cut(s)	854
BseRI	GAGGAG	2 cut(s)	533, 788
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	3 cut(s)	149, 392, 807
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	255, 695
BslI	CCNNNNNNNGG	3 cut(s)	238, 399, 860
BsmFI	GGGAC	2 cut(s)	255, 695
BsnI	GGCC	3 cut(s)	149, 392, 807
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	184, 792, 813
Bsp19I	CCATGG	2 cut(s)	368, 453
BspANI	GGCC	3 cut(s)	149, 392, 807
BspCNI	CTCAG	5 cut(s)	285, 306, 435, 508, 762
BspEI	TCCGGA	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	828
BspPI	GGATC	1 cut(s)	800
BspQI	GCTCTTC	1 cut(s)	1021
BsrDI	GCAATG	2 cut(s)	650, 1038
BsrI	ACTGG	1 cut(s)	854
BssECI	CCNNGG	4 cut(s)	368, 439, 453, 665
BssMI	GATC	3 cut(s)	184, 792, 813
BssSI	CACGAG	1 cut(s)	397
BssT1I	CCWWGG	4 cut(s)	368, 439, 453, 665
Bst2BI	CACGAG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	16, 111
Bst6I	CTCTTC	2 cut(s)	796, 1021
BstC8I	GCNNGC	2 cut(s)	320, 641
BstDEI	CTNAG	7 cut(s)	43, 293, 314, 422, 516, 740, 749
BstDSI	CCRYGG	2 cut(s)	368, 453
BstEII	GGTNACC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	187, 795, 816
BstMBI	GATC	3 cut(s)	184, 792, 813
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 25, 582
BstNI	CCWGG	2 cut(s)	16, 111
BstNSI	RCATGY	3 cut(s)	322, 912, 1066
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	14, 109
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	749
BsuRI	GGCC	3 cut(s)	149, 392, 807
BtgI	CCRYGG	2 cut(s)	368, 453
BtgZI	GCGATG	1 cut(s)	1035
Cac8I	GCNNGC	2 cut(s)	320, 641
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	7 cut(s)	79, 165, 319, 369, 454, 909, 1063
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	7 cut(s)	43, 293, 314, 422, 516, 740, 749
DpnI	GATC	3 cut(s)	186, 794, 815
DpnII	GATC	3 cut(s)	184, 792, 813
Eam1104I	CTCTTC	2 cut(s)	796, 1021
EarI	CTCTTC	2 cut(s)	796, 1021
Eco130I	CCWWGG	4 cut(s)	368, 439, 453, 665
Eco147I	AGGCCT	2 cut(s)	149, 807
Eco24I	GRGCYC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	14, 109
EcoT14I	CCWWGG	4 cut(s)	368, 439, 453, 665
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	829
ErhI	CCWWGG	4 cut(s)	368, 439, 453, 665
FaeI	CATG	7 cut(s)	82, 168, 322, 372, 457, 912, 1066
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 1051, 1083
FaqI	GGGAC	2 cut(s)	255, 695
FatI	CATG	7 cut(s)	78, 164, 318, 368, 453, 908, 1062
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	829
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	5 cut(s)	93, 335, 563, 603, 735
GluI	GCNGC	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	149, 392, 807
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	7 cut(s)	82, 168, 322, 372, 457, 912, 1066
HindIII	AAGCTT	2 cut(s)	359, 1124
HinfI	GANTC	7 cut(s)	73, 161, 262, 458, 631, 653, 1075
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	5 cut(s)	124, 493, 944, 959, 983
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	6 cut(s)	315, 385, 425, 592, 916, 1122
Hpy188III	TCNNGA	8 cut(s)	153, 174, 192, 266, 282, 603, 751, 1079
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	5 cut(s)	523, 896, 947, 971, 1012
HpyCH4IV	ACGT	2 cut(s)	681, 962
HpyCH4V	TGCA	8 cut(s)	104, 168, 325, 375, 497, 555, 643, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 25, 582
HpyF3I	CTNAG	7 cut(s)	43, 293, 314, 422, 516, 740, 749
HpySE526I	ACGT	2 cut(s)	681, 962
Hsp92II	CATG	7 cut(s)	82, 168, 322, 372, 457, 912, 1066
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	3 cut(s)	184, 792, 813
LguI	GCTCTTC	1 cut(s)	1021
LmnI	GCTCC	2 cut(s)	25, 832
LpnPI	CCDG	9 cut(s)	28, 96, 123, 205, 368, 736, 752, 783, 867
Lsp1109I	GCAGC	1 cut(s)	309
MaeI	CTAG	5 cut(s)	93, 335, 563, 603, 735
MaeII	ACGT	2 cut(s)	681, 962
MaeIII	GTNAC	2 cut(s)	130, 608
MalI	GATC	3 cut(s)	186, 794, 815
MboI	GATC	3 cut(s)	184, 792, 813
MboII	GAAGA	8 cut(s)	362, 813, 947, 962, 986, 1002, 1035, 1038
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	829
MluCI	AATT	6 cut(s)	410, 596, 621, 858, 1008, 1091
MlyI	GAGTC	3 cut(s)	170, 271, 640
MmeI	TCCRAC	3 cut(s)	504, 866, 902
Mph1103I	ATGCAT	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	191
MseI	TTAA	6 cut(s)	306, 413, 492, 783, 872, 1129
MslI	CAYNNNNRTG	1 cut(s)	226
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	16, 111
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	2 cut(s)	16, 111
MwoI	GCNNNNNNNGC	3 cut(s)	11, 25, 582
NcoI	CCATGG	2 cut(s)	368, 453
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	3 cut(s)	184, 792, 813
NlaIII	CATG	7 cut(s)	82, 168, 322, 372, 457, 912, 1066
NlaIV	GGNNCC	1 cut(s)	828
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	3 cut(s)	322, 912, 1066
PaeI	GCATGC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	2 cut(s)	149, 807
PciSI	GCTCTTC	1 cut(s)	1021
PfeI	GAWTC	4 cut(s)	73, 458, 653, 1075
PflMI	CCANNNNNTGG	2 cut(s)	238, 860
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	3 cut(s)	169, 270, 639
PpsI	GAGTC	3 cut(s)	169, 270, 639
Psp6I	CCWGG	2 cut(s)	14, 109
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	14, 109
PspN4I	GGNNCC	1 cut(s)	828
PspPI	GGNCC	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	1021
SaqAI	TTAA	6 cut(s)	306, 413, 492, 783, 872, 1129
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	3 cut(s)	184, 792, 813
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	3 cut(s)	170, 271, 640
ScrFI	CCNGG	2 cut(s)	16, 111
SduI	GDGCHC	1 cut(s)	829
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	226
SmlI	CTYRAG	5 cut(s)	151, 174, 847, 892, 1057
SmoI	CTYRAG	5 cut(s)	151, 174, 847, 892, 1057
SpeI	ACTAGT	1 cut(s)	562
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	6 cut(s)	410, 596, 621, 858, 1008, 1091
SseBI	AGGCCT	2 cut(s)	149, 807
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	5 cut(s)	93, 335, 563, 603, 735
StuI	AGGCCT	2 cut(s)	149, 807
StyD4I	CCNGG	2 cut(s)	14, 109
StyI	CCWWGG	4 cut(s)	368, 439, 453, 665
TaiI	ACGT	2 cut(s)	684, 965
TaqI	TCGA	4 cut(s)	175, 283, 461, 1108
TasI	AATT	6 cut(s)	410, 596, 621, 858, 1008, 1091
TfiI	GAWTC	4 cut(s)	73, 458, 653, 1075
Tru1I	TTAA	6 cut(s)	306, 413, 492, 783, 872, 1129
Tru9I	TTAA	6 cut(s)	306, 413, 492, 783, 872, 1129
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	1038, 1113
Van91I	CCANNNNNTGG	2 cut(s)	238, 860
XapI	RAATTY	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	602
XceI	RCATGY	3 cut(s)	322, 912, 1066
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	5 cut(s)	93, 335, 563, 603, 735
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.