Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Forward (+)

54454430 .. 54455931

Gene Structure 1502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCTTCACAAGCCAGGCTAAAGAAGCAGCCTCACTTTGTCTTAGTGCCACTTATGGCACAAGGGCATATGATTCCCATGATAGACATGGCTAGGCTCTTCGCAGAGCGTGGTGTGATGGTTAGCTTGGTCACCACTCCATACGATGCCTCAAGATTTGAGTCATGCATTTCTCGAGCAAGAGATCAATCCGGACTTCCAATATCCATTGTGAAAATCCCATCTCCGTGCCAAGAAGTGGGACTTCCAATGGGGAGTGAGAGTCTTGACACCTTACCATCTCGAAATCTGCTGAGGAAGTTCTTTAAGGCTCTGGGCATGCTGCAAGAACCACTAGAAAAGTACCTTGAAGACCAGAAACTTCAGCCATGGTGCATAATCTCGGACAAGGCCCTCTTGTGGACTTCAAAAATATCTCAGAAGTTCAATATGCCAAGGATTGTTTTCCATGGAATGTGCTGCTTCTCACTGCTGAGCTCTCACAATATCAAACTCTATAATGCTCACAATTCTGTTACTTCTGATTTTGAACCTTTTGTGGTGCCAGGGCTGCCCCAGAGGATTGAGATCACTAAGGCTCAGCTACCAGGAGCATTCTTTAATGTACTTGAACACGGGTGTGCTGAGGAGTTGGAGAAGGTGTTTGATAAAAAGGTTTGGTGCATTGGACCAGTTTCCTTATGCTACAAGAGCAATTCAGATGGGTTTTCTAGAGGTAACAAATCCCCAATTGATGAGAGTCAATGCTTGCAATGGCTTGAATCAATGAAACCAAGGTCTGTCATCTATGTTTGTCTTGGTAGCCTTTGTAGATTAGTCCCATCACAACTGATAGAGCTTGGACAAGGCTTAGAAGCCTCAGGAAAACCCTTTATCTGGGTAATCAAAACATGTGGGAAGTATGAAGAATTGGAGAAGTGGTTAGTGGAGGAGAGGTTTGAGGAAAGGATCAAAGGAAGAGACCTTTTGATCAAGGGTTGGGCTCCCCAAGTTCTTCTTCTCTCAAGTCCAGCAATTGGAGGGTTCTTAACTCATTGTGGTTGGAACTCAAGCATAGAAGGGGCATATTCTGGTGTGCCAATGATCACATGGCCTCTATTCGCTGAGCAATTCCTTAACGAAAAATTGATCATAGAGGTTTTAAAGAACGGTGTTCGGGTTGGTGTGGAGATTCCTGTTAGATGGGGGGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGGGGTGAAGAAGGCAATACAAACACTGATGGATGGAGGTGAAGAAGGAGAAAAGAGAAGAAAGAGAGCAACAGAAATTGGAGAGAAGGGAAGAAGAGCCATGGAAAAAGGAGGTTCATCGCACTCAAGCATGTCTTCTTTGATTCAAGGTGTTAGGCAATTACATAAAGCCACTCAAAACAAAGGTCAGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

474

Amino Acids

52.99

Weight (kDa)

8.96

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	254 - 377	1.7e-17	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AccB7I	CCANNNNNTGG	2 cut(s)	238, 1016
AccIII	TCCGGA	1 cut(s)	191
AclWI	GGATC	1 cut(s)	956
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	344, 606
AfiI	CCNNNNNNNGG	4 cut(s)	238, 399, 876, 1016
AflIII	ACRYGT	1 cut(s)	890
AgsI	TTSAA	7 cut(s)	350, 408, 427, 530, 611, 761, 1370
AjnI	CCWGG	3 cut(s)	14, 544, 586
AjuI	GAANNNNNNNTTGG	4 cut(s)	981, 1013, 1185, 1217
AleI	CACNNNNGTG	1 cut(s)	618
AluBI	AGCT	5 cut(s)	126, 477, 583, 838, 1417
AluI	AGCT	5 cut(s)	126, 477, 583, 838, 1417
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	954
AlwI	GGATC	1 cut(s)	956
Ama87I	CYCGRG	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	2 cut(s)	390, 1091
ApeKI	GCWGC	4 cut(s)	28, 322, 459, 550
ArsI	GACNNNNNNTTYG	1 cut(s)	1393
AspS9I	GGNCC	2 cut(s)	391, 668
AsuHPI	GGTGA	4 cut(s)	124, 1225, 1240, 1274
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	541
BanII	GRGCYC	2 cut(s)	479, 985
BbsI	GAAGAC	2 cut(s)	357, 1350
Bbv12I	GWGCWC	1 cut(s)	479
BbvCI	CCTCAGC	2 cut(s)	293, 624
BbvI	GCAGC	4 cut(s)	40, 309, 446, 537
BccI	CCATC	9 cut(s)	112, 229, 286, 695, 829, 1176, 1217, 1246, 1250
BciT130I	CCWGG	3 cut(s)	16, 546, 588
BclI	TGATCA	3 cut(s)	969, 1083, 1128
BcoDI	GTCTC	1 cut(s)	954
BfaI	CTAG	3 cut(s)	93, 335, 711
BisI	GCNGC	4 cut(s)	29, 323, 460, 551
BlpI	GCTNAGC	3 cut(s)	473, 579, 1104
BlsI	GCNGC	4 cut(s)	30, 324, 461, 552
Bme1390I	CCNGG	3 cut(s)	16, 546, 588
Bme18I	GGWCC	1 cut(s)	668
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	391, 668
BmiI	GGNNCC	2 cut(s)	543, 984
BmrFI	CCNGG	3 cut(s)	16, 546, 588
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	2 cut(s)	357, 1350
Bpu10I	CCTNAGC	2 cut(s)	293, 624
Bpu1102I	GCTNAGC	3 cut(s)	473, 579, 1104
BpuEI	CTTGAG	4 cut(s)	136, 988, 1033, 1333
BsaBI	GATNNNNATC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	954
BsaJI	CCNNGG	6 cut(s)	368, 434, 448, 545, 773, 1323
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 399, 876, 1016
Bse1I	ACTGG	1 cut(s)	671
Bse21I	CCTNAGG	1 cut(s)	859
Bse3DI	GCAATG	1 cut(s)	758
Bse8I	GATNNNNATC	1 cut(s)	566
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	16, 546, 588
BseDI	CCNNGG	6 cut(s)	368, 434, 448, 545, 773, 1323
BseGI	GGATG	2 cut(s)	1195, 1261
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	4 cut(s)	238, 399, 876, 1016
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	7 cut(s)	284, 431, 464, 593, 615, 873, 1095
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	2 cut(s)	641, 944
BseXI	GCAGC	4 cut(s)	40, 309, 446, 537
BshFI	GGCC	2 cut(s)	392, 1093
BshNI	GGYRCC	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	255, 803
BslI	CCNNNNNNNGG	4 cut(s)	238, 399, 876, 1016
BsmAI	GTCTC	1 cut(s)	954
BsmFI	GGGAC	2 cut(s)	255, 803
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	392, 1093
Bso31I	GGTCTC	1 cut(s)	954
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	479, 985
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
Bsp1720I	GCTNAGC	3 cut(s)	473, 579, 1104
Bsp19I	CCATGG	3 cut(s)	368, 448, 1323
BspANI	GGCC	2 cut(s)	392, 1093
BspCNI	CTCAG	7 cut(s)	285, 430, 465, 592, 616, 872, 1096
BspEI	TCCGGA	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	543, 984
BspPI	GGATC	1 cut(s)	956
BspQI	GCTCTTC	2 cut(s)	104, 1312
BspT107I	GGYRCC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	758
BsrI	ACTGG	1 cut(s)	671
BssECI	CCNNGG	6 cut(s)	368, 434, 448, 545, 773, 1323
BssMI	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
BssT1I	CCWWGG	5 cut(s)	368, 434, 448, 773, 1323
Bst2UI	CCWGG	3 cut(s)	16, 546, 588
Bst4CI	ACNGT	1 cut(s)	1151
Bst6I	CTCTTC	4 cut(s)	104, 952, 1188, 1312
BstC8I	GCNNGC	2 cut(s)	320, 749
BstDSI	CCRYGG	3 cut(s)	368, 448, 1323
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	1195, 1261
BstKTI	GATC	6 cut(s)	187, 570, 951, 972, 1086, 1131
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 25, 550, 690
BstNI	CCWGG	3 cut(s)	16, 546, 588
BstNSI	RCATGY	3 cut(s)	322, 894, 1357
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	3 cut(s)	14, 544, 586
BstV1I	GCAGC	4 cut(s)	40, 309, 446, 537
BstV2I	GAAGAC	2 cut(s)	357, 1350
Bsu36I	CCTNAGG	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	392, 1093
BtgI	CCRYGG	3 cut(s)	368, 448, 1323
BtgZI	GCGATG	1 cut(s)	1326
BtsCI	GGATG	2 cut(s)	1195, 1261
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	467, 1247
Cac8I	GCNNGC	2 cut(s)	320, 749
Cfr13I	GGNCC	2 cut(s)	391, 668
Csp6I	GTAC	2 cut(s)	343, 605
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviQI	GTAC	2 cut(s)	343, 605
DpnI	GATC	6 cut(s)	186, 569, 950, 971, 1085, 1130
DpnII	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
DraI	TTTAAA	1 cut(s)	1143
Eam1104I	CTCTTC	4 cut(s)	104, 952, 1188, 1312
EarI	CTCTTC	4 cut(s)	104, 952, 1188, 1312
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	5 cut(s)	368, 434, 448, 773, 1323
Eco24I	GRGCYC	2 cut(s)	479, 985
Eco31I	GGTCTC	1 cut(s)	954
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	859
Eco88I	CYCGRG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	3 cut(s)	14, 544, 586
EcoT14I	CCWWGG	5 cut(s)	368, 434, 448, 773, 1323
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	479, 985
ErhI	CCWWGG	5 cut(s)	368, 434, 448, 773, 1323
FalI	AAGNNNNNCTT	8 cut(s)	228, 260, 380, 412, 981, 1013, 1342, 1374
FaqI	GGGAC	2 cut(s)	255, 803
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	3 cut(s)	969, 1083, 1128
Fnu4HI	GCNGC	4 cut(s)	29, 323, 460, 551
FokI	GGATG	2 cut(s)	1202, 1268
FriOI	GRGCYC	2 cut(s)	479, 985
Fsp4HI	GCNGC	4 cut(s)	29, 323, 460, 551
FspBI	CTAG	3 cut(s)	93, 335, 711
GluI	GCNGC	4 cut(s)	29, 323, 460, 551
HaeIII	GGCC	2 cut(s)	392, 1093
HapII	CCGG	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	1415
HinfI	GANTC	7 cut(s)	73, 161, 262, 739, 761, 1171, 1366
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	4 cut(s)	124, 1225, 1240, 1274
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	5 cut(s)	385, 420, 523, 700, 1413
Hpy188III	TCNNGA	7 cut(s)	153, 174, 192, 266, 282, 711, 861
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	5 cut(s)	631, 1052, 1228, 1262, 1303
HpyCH4III	ACNGT	1 cut(s)	1151
HpyCH4V	TGCA	5 cut(s)	168, 325, 375, 663, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 25, 550, 690
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	3 cut(s)	969, 1083, 1128
Kzo9I	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
LguI	GCTCTTC	2 cut(s)	104, 1312
LmnI	GCTCC	2 cut(s)	590, 988
Lsp1109I	GCAGC	4 cut(s)	40, 309, 446, 537
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	3 cut(s)	93, 335, 711
MaeIII	GTNAC	3 cut(s)	130, 514, 716
MalI	GATC	6 cut(s)	186, 569, 950, 971, 1085, 1130
MboI	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
MfeI	CAATTG	2 cut(s)	729, 1014
MhlI	GDGCHC	2 cut(s)	479, 985
MluCI	AATT	9 cut(s)	508, 694, 729, 908, 1014, 1109, 1124, 1299, 1382
MlyI	GAGTC	3 cut(s)	170, 271, 748
MmeI	TCCRAC	3 cut(s)	612, 1022, 1183
Mph1103I	ATGCAT	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	191
MseI	TTAA	6 cut(s)	306, 600, 1028, 1116, 1142, 1420
MslI	CAYNNNNRTG	2 cut(s)	226, 618
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	3 cut(s)	16, 546, 588
MunI	CAATTG	2 cut(s)	729, 1014
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	3 cut(s)	16, 546, 588
MwoI	GCNNNNNNNGC	4 cut(s)	11, 25, 550, 690
NcoI	CCATGG	3 cut(s)	368, 448, 1323
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
NlaIV	GGNNCC	2 cut(s)	543, 984
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	3 cut(s)	322, 894, 1357
OliI	CACNNNNGTG	1 cut(s)	618
PaeI	GCATGC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	174
PciI	ACATGT	1 cut(s)	890
PciSI	GCTCTTC	2 cut(s)	104, 1312
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	4 cut(s)	73, 761, 1171, 1366
PflMI	CCANNNNNTGG	2 cut(s)	238, 1016
PkrI	GCNGC	4 cut(s)	30, 324, 461, 552
PleI	GAGTC	3 cut(s)	169, 270, 747
PpsI	GAGTC	3 cut(s)	169, 270, 747
PscI	ACATGT	1 cut(s)	890
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	14, 544, 586
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	3 cut(s)	14, 544, 586
PspN4I	GGNNCC	2 cut(s)	543, 984
PspPI	GGNCC	2 cut(s)	391, 668
RsaI	GTAC	2 cut(s)	344, 606
RsaNI	GTAC	2 cut(s)	343, 605
RseI	CAYNNNNRTG	2 cut(s)	226, 618
SacI	GAGCTC	1 cut(s)	479
SapI	GCTCTTC	2 cut(s)	104, 1312
SaqAI	TTAA	6 cut(s)	306, 600, 1028, 1116, 1142, 1420
SatI	GCNGC	4 cut(s)	29, 323, 460, 551
Sau3AI	GATC	6 cut(s)	184, 567, 948, 969, 1083, 1128
Sau96I	GGNCC	2 cut(s)	391, 668
SchI	GAGTC	3 cut(s)	170, 271, 748
ScrFI	CCNGG	3 cut(s)	16, 546, 588
SduI	GDGCHC	2 cut(s)	479, 985
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	668
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	226, 618
SmlI	CTYRAG	5 cut(s)	151, 174, 1003, 1048, 1348
SmoI	CTYRAG	5 cut(s)	151, 174, 1003, 1048, 1348
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	9 cut(s)	508, 694, 729, 908, 1014, 1109, 1124, 1299, 1382
SspMI	CTAG	3 cut(s)	93, 335, 711
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	3 cut(s)	14, 544, 586
StyI	CCWWGG	5 cut(s)	368, 434, 448, 773, 1323
TaaI	ACNGT	1 cut(s)	1151
TaqI	TCGA	2 cut(s)	175, 283
TasI	AATT	9 cut(s)	508, 694, 729, 908, 1014, 1109, 1124, 1299, 1382
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	4 cut(s)	73, 761, 1171, 1366
Tru1I	TTAA	6 cut(s)	306, 600, 1028, 1116, 1142, 1420
Tru9I	TTAA	6 cut(s)	306, 600, 1028, 1116, 1142, 1420
TscAI	CASTG	2 cut(s)	474, 1254
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	4 cut(s)	28, 322, 459, 550
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	4 cut(s)	782, 918, 1206, 1329
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	474, 1254
Van91I	CCANNNNNTGG	2 cut(s)	238, 1016
VpaK11BI	GGWCC	1 cut(s)	668
XbaI	TCTAGA	1 cut(s)	710
XceI	RCATGY	3 cut(s)	322, 894, 1357
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 1086
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	3 cut(s)	93, 335, 711
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.