Rroxscaffold_6G00410270

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
32699107 .. 32701286
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410270.1

Sequence Viewer

Length: 459 bp
ATGTTCGGTGTGCCAATGATCACATGGCCTCTATTCGCCGAGCAATTCCTTAACGAAAAATTGATCATAGAGGTTTTAAAGATAGGTGTTCGGGTTGGTGTGGAGATTCCTGTTAGATGGGGGGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGGGGTGAAGAAAGCAATACAAACACCGATGGATGGAGGTGAAGAAGGAGAAAAGAGAAGAAAGAGAGCAACAGAAATTGGAGAGAAAGGAAGAAGAGCCATGGAACAAGGAGATTCATCACACTCAAGCATGTCTTCTTTGATTCAAGATGTTAGGCAATTACATGAAGCCACTCGAAACAAAGGTCGAAGCTTTAACTTGAGCATAAAAAAAAAAAAAAAAAAAATCAATGTTCCCGCATGTGAAACTTTGTTGCAGATTCAGCTTGAACATATATGGATACAAGCAAGAGTCGTGTAA

Protein Analysis

152

Amino Acids

17.26

Weight (kDa)

9.75

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 396
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 305, 428
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 2 cut(s) 351, 424
AluI AGCT 2 cut(s) 351, 424
AoxI GGCC 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AsuHPI GGTGA 3 cut(s) 160, 175, 209
BbsI GAAGAC 1 cut(s) 285
BccI CCATC 4 cut(s) 111, 152, 181, 185
BciVI GTATCC 1 cut(s) 432
BclI TGATCA 2 cut(s) 18, 63
BfuI GTATCC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 268, 379
BsaJI CCNNGG 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 130, 196
BseLI CCNNNNNNNGG 1 cut(s) 191
BshFI GGCC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 18, 63
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 1 cut(s) 396
BspANI GGCC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 18, 63
BssT1I CCWWGG 1 cut(s) 258
Bst6I CTCTTC 2 cut(s) 123, 247
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 130, 196
BstKTI GATC 2 cut(s) 21, 66
BstMBI GATC 2 cut(s) 18, 63
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNSI RCATGY 2 cut(s) 292, 402
BstV2I GAAGAC 1 cut(s) 285
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 130, 196
CviAII CATG 5 cut(s) 24, 259, 289, 323, 399
CviJI RGCY 5 cut(s) 28, 257, 329, 351, 424
CviKI_1 RGCY 5 cut(s) 28, 257, 329, 351, 424
DpnI GATC 2 cut(s) 20, 65
DpnII GATC 2 cut(s) 18, 63
DraI TTTAAA 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 123, 247
EarI CTCTTC 2 cut(s) 123, 247
Eco130I CCWWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 5 cut(s) 27, 262, 292, 326, 402
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FatI CATG 5 cut(s) 23, 258, 288, 322, 398
FauI CCCGC 1 cut(s) 403
FbaI TGATCA 2 cut(s) 18, 63
FokI GGATG 2 cut(s) 137, 203
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 5 cut(s) 27, 262, 292, 326, 402
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 5 cut(s) 106, 272, 301, 418, 450
HphI GGTGA 3 cut(s) 160, 175, 209
Hpy188III TCNNGA 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
Hsp92II CATG 5 cut(s) 27, 262, 292, 326, 402
Ksp22I TGATCA 2 cut(s) 18, 63
Kzo9I GATC 2 cut(s) 18, 63
LguI GCTCTTC 1 cut(s) 247
LpnPI CCDG 1 cut(s) 123
MalI GATC 2 cut(s) 20, 65
MboI GATC 2 cut(s) 18, 63
MboII GAAGA 8 cut(s) 140, 163, 178, 212, 228, 261, 264, 285
MluCI AATT 4 cut(s) 44, 59, 234, 317
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 39, 64, 188
MseI TTAA 3 cut(s) 51, 77, 354
MwoI GCNNNNNNNGC 1 cut(s) 421
NcoI CCATGG 1 cut(s) 258
NdeII GATC 2 cut(s) 18, 63
NlaIII CATG 5 cut(s) 27, 262, 292, 326, 402
NmeAIII GCCGAG 1 cut(s) 64
NspI RCATGY 2 cut(s) 292, 402
PciSI GCTCTTC 1 cut(s) 247
PfeI GAWTC 4 cut(s) 106, 272, 301, 418
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 247
SaqAI TTAA 3 cut(s) 51, 77, 354
Sau3AI GATC 2 cut(s) 18, 63
SchI GAGTC 1 cut(s) 459
SetI ASST 6 cut(s) 75, 88, 199, 346, 353, 426
SmlI CTYRAG 2 cut(s) 283, 358
SmoI CTYRAG 2 cut(s) 283, 358
Sse9I AATT 4 cut(s) 44, 59, 234, 317
SsiI CCGC 1 cut(s) 396
StyI CCWWGG 1 cut(s) 258
TaqI TCGA 2 cut(s) 334, 346
TasI AATT 4 cut(s) 44, 59, 234, 317
TfiI GAWTC 4 cut(s) 106, 272, 301, 418
Tru1I TTAA 3 cut(s) 51, 77, 354
Tru9I TTAA 3 cut(s) 51, 77, 354
TspDTI ATGAA 3 cut(s) 141, 264, 339
XceI RCATGY 2 cut(s) 292, 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.