Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Forward (+)

15695758 .. 15699006

Gene Structure 3249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0169000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

ATGAAGGAACTGGAACTTACCAGAACTACACACCTTGCATCTGCATCACCTCACGTTTCTAAAGCAGTATCAAGTTTGAGCGTGGAGGATGATGGTACCATCACTAGTACTGCTACCGTTTCTGACCAAGTGAATCTGAACATTGAGAATGATATTACTACCAGGATTGCTAATGAGGCTAAGATCCAGCATGCAAATATTTCCAAGATAGTAAAGGAGAAGGACTTCGCTACCTTACAGAACTTTGGAGGCATCAAAGGAATTGCAGAGGCACTCAGTACAGATTTACACAGTGGAATCCCAGGTGATGAACAAGATCTTCATGATCGATGCAGTGCAGTAGTCTCAACAACACAGGCTCCAACTCCAAGCTTCTTTAAACTTCTCCGACAATCTTGTTTCGATTGGACCGTTTTCCTTCTCTTCGTGTGTGTCATCCTGTCAACTGTATTTGGTATCCAGCAGGAAGGCCCAAGTAATGGTTGGCTTGAAGGAGTTGTCGGAATGTTTGCGATCATCATACTTGTGGTTGTACCTACAATGCGCAAGTATTTCTCCATGCCGCATCCCAGGAATACTAGTCAAATGAAAACTAAGGTCCGCAGAGGAGGAAACCTGCTTCATATCTCCCCATCGGATGTTGTGCCAGGTGACATAGTATGCTTGGAATTGGGATCTCTAGTTCCTGCTGATGGTTTGTTCGTTTCGACTGGTGAATCCTTAGTGTTGGAAGATGGTATGAAATTTCCAACCGTCGATGACAGCAATCCTTTTCTGGTTTATGGTGCAAGGGTGGTAAATGGTAATGGTCGCATGTTGGTTACTTGTGTGGGGATGAAGACAACATTAGGTGAGCTGATGGGCCAAGTTAGATGTACACCTAACCAGGACCAATTACCAGCTCAACTTGATAACTTGAGCACAAGGTTGCAGAATGTTGGGCTCTTGATCACAATTTTCATGACTGTAGTGCTTATCATTCGTTCCGTGGTTCTAAAGGTTAATGAGTACCCTGGCCTCCAAGCTGATCAGTTCAAGGCTAAACCAACTGCAAGCGAGGAGCTAATCAATGTCATTGGCAGATTTTTCATGAAATCAAGTGGGCAGATTAGTGTGTTGGCGATGTATCTGCCTCTATTGATTGTAGGCTTAGCGGAAGGAGTACCTTTTTCAGTTGCACTTGCCATCAATTATTGGACTAAGACCACGCTGTCTGGGAAAGCTAGTGCTCAGAGAATCTTAGCTTGTTTCACCATGGGCTGTGTGTCAAATATTTGCATTGGTGATGGGCTAACTTTGAACCCTGTAATTGAAGTCGACGTGAGCTGTGATGGGGATCAAATAATCGATACAGAGAGTGTTGCTGGTATTAACAGACACGTTCGTGAAGCTTTATACAAAGGAATTAGCACACCACTTTTGATGCCTTCAAGCCCTTGTAGCTCAACAGAACACCGGGTCCTGCTACCGTGGGCCAAATCTAATTTGGGTATGGACAATGAGAATTTATTGCAAAATTGCACCATTGTGGGGAGCGAAAAGTTGAGCACCGATGAGGAGGCTAGTGGAGTTCTGATGAAGGACAATGAAACTGGAGATATGTGCTTTTATTGGAATGGACCTGCAACAACAATATTGCCCATGTGTTCCGAATACTATGACAGCAAGGGGACAACAAAGCTCATGGATGAACAGAAGAAACGTGATTTTAAAGAAATTATGGGGAACATGCAGTCCAAACATCTCAAGACCATTGCATTTGCGTACAAGAAGATTGATGCTCTAATGCCTGAAGAAGGCAACAGCTTAATATTGATAGGACTTCTAGGTGTGAAGTGTTGCACTGAGACAATGGAAGCACTGGAAGTTCTACAAAAAGCAGGAGTGGACATCATCCAGTTCCCAAAAGATAAAGAGTCAGTACTGTCGGAAGGTGAAAGTCCTGTTTATGGAATGGGAAGACCTGCTGACAAGCTCCACACACTGCAACGTCTGAAGGAAGAGGGCCATGTTGTAGCAATGGTTGGGGCTAGAACAAATGAGACTCCAGCTCTAAAAGAAGCCGATGTGGGGATTGCAATAGGGACTTGCCTTAGTGAGATGGCAAGAGAGGGTTCTGATCTCATCATCCCCGATTGCAGTCTCAGTTTCTTGGTCAACATTATTCGGATCGGAAGATGCATTCACTACAACATTCAGAAGTACATCCAAGTTGAGCTCACCATGAATATATCATTGCTTGTGACAATCTCGATCACTACAATGTCCTCGGGACATGGCACAGTTGGGGCAATCGAAGTAGTGTGGGCAAATATGGTTGTGACACTATGTGGGCTTGCGCTACTGGTTGAGCCGCCAACCGAGGAGCAGATGGCAAAGCCGCCGGTAAAACAAACTGAATCTCTCATTACCAAGGCAATGTGGAGAAACATATTACTTCAAGCTTTATATCAGGCTGCCATCTTGGTCACCTTTCAGTCCAAATATAAAGCTCTCCCAGGCATCAACGAGAAGATTATGGAGTCCATAGTTTTCAGCAGTTATGTTCTTTGTCAGGTATTTAATCAAGTCAGCTCAAGGGAGCTAGAGAAGAAAAATGTGTTCAGAGGTATACTTCGAACTCGATGGTTATGGGTGGCTGTGGGGGTTAGTATCACGATGCAGGTGGGTTTTGTTGAGATTGCACACAAGGTTGCTGGCAATGCAAGGTTGAATTCGGCACAATGGGGTGTCGCTCTTTTAATAGCGATGGTTTCCTGGCCAATCGATTTGGCTGGGAAATGCGTATGGGGTGTCATCATGAAGATTAGAATACTTGAATCTGATATTGGATCCACCAGTATGAGGTCCTCTGCTGTCTCAGAATCAGCTTCTAATCGAGAGCTCCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

964

Amino Acids

105.15

Weight (kDa)

5.75

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	194 - 290	4.1e-10	P-type ATPase actuator domain
Cation_ATPase	PF13246	496 - 610	2.7e-07	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	764 - 927	5.8e-32	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2653
AasI	GACNNNNNNGTC	1 cut(s)	1210
Acc16I	TGCGCA	1 cut(s)	545
Acc36I	ACCTGC	4 cut(s)	624, 1630, 1972, 2653
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	2 cut(s)	1317, 2611
AciI	CCGC	5 cut(s)	563, 601, 1154, 2354, 2381
AclWI	GGATC	6 cut(s)	178, 682, 1344, 2177, 2826, 2839
AcoI	YGGCCR	1 cut(s)	2759
AcsI	RAATTY	3 cut(s)	743, 1504, 2713
AcuI	CTGAAG	2 cut(s)	1812, 2015
AdeI	CACNNNGTG	1 cut(s)	2330
AfiI	CCNNNNNNNGG	7 cut(s)	479, 692, 1530, 1796, 1949, 2070, 2844
AflIII	ACRYGT	1 cut(s)	1378
AgsI	TTSAA	8 cut(s)	491, 1036, 1300, 1313, 1431, 2441, 2713, 2819
AhlI	ACTAGT	2 cut(s)	104, 578
AjiI	CACGTC	1 cut(s)	1321
AjnI	CCWGG	8 cut(s)	161, 301, 569, 646, 885, 1012, 2497, 2756
AjuI	GAANNNNNNNTTGG	2 cut(s)	2811, 2843
AleI	CACNNNNGTG	2 cut(s)	1383, 1526
AloI	GAACNNNNNNTCC	6 cut(s)	666, 698, 1443, 1475, 1718, 1750
Alw21I	GWGCWC	5 cut(s)	923, 1231, 1550, 2220, 2886
Alw26I	GTCTC	5 cut(s)	349, 1841, 2036, 2147, 2863
AlwI	GGATC	6 cut(s)	178, 682, 1344, 2177, 2826, 2839
Ama87I	CYCGRG	1 cut(s)	2269
AoxI	GGCC	6 cut(s)	469, 862, 1015, 1473, 2005, 2759
ApeKI	GCWGC	1 cut(s)	2456
ApoI	RAATTY	3 cut(s)	743, 1504, 2713
Asp700I	GAANNNNTTC	1 cut(s)	224
Asp718I	GGTACC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	546, 2341
AsuC2I	CCSGG	1 cut(s)	1457
AsuII	TTCGAA	1 cut(s)	2617
AvaI	CYCGRG	1 cut(s)	2269
AvaII	GGWCC	6 cut(s)	408, 598, 889, 1459, 1619, 2847
BalI	TGGCCA	1 cut(s)	2761
BamHI	GGATCC	1 cut(s)	2831
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	3 cut(s)	945, 2220, 2886
BbsI	GAAGAC	2 cut(s)	845, 1966
Bbv12I	GWGCWC	5 cut(s)	923, 1231, 1550, 2220, 2886
BbvI	GCAGC	1 cut(s)	2443
BcgI	CGANNNNNNTGC	2 cut(s)	1111, 1145
BciT130I	CCWGG	8 cut(s)	163, 303, 571, 648, 887, 1014, 2499, 2758
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	2 cut(s)	948, 1027
BcnI	CCSGG	1 cut(s)	1457
BcoDI	GTCTC	5 cut(s)	349, 1841, 2036, 2147, 2863
BcuI	ACTAGT	2 cut(s)	104, 578
BfaI	CTAG	9 cut(s)	105, 579, 680, 1224, 1563, 1826, 2031, 2585, 2888
BfmI	CTRYAG	1 cut(s)	966
BfuAI	ACCTGC	4 cut(s)	624, 1630, 1972, 2653
BfuI	GTATCC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	4 cut(s)	563, 2354, 2381, 2457
BlpI	GCTNAGC	1 cut(s)	1150
BlsI	GCNGC	4 cut(s)	564, 2355, 2382, 2458
BmcAI	AGTACT	2 cut(s)	109, 1923
Bme1390I	CCNGG	9 cut(s)	163, 303, 571, 648, 887, 1014, 1457, 2499, 2758
Bme18I	GGWCC	6 cut(s)	408, 598, 889, 1459, 1619, 2847
BmeT110I	CYCGRG	1 cut(s)	2269
BmgBI	CACGTC	1 cut(s)	1321
BmiI	GGNNCC	4 cut(s)	97, 360, 1460, 2833
BmrFI	CCNGG	9 cut(s)	163, 303, 571, 648, 887, 1014, 1457, 2499, 2758
BpiI	GAAGAC	2 cut(s)	845, 1966
BpmI	CTGGAG	2 cut(s)	1614, 2031
Bpu1102I	GCTNAGC	1 cut(s)	1150
Bpu14I	TTCGAA	1 cut(s)	2617
BpuEI	CTTGAG	3 cut(s)	937, 1730, 2560
BpuMI	CCSGG	1 cut(s)	1457
Bsa29I	ATCGAT	3 cut(s)	328, 1347, 2766
BsaBI	GATNNNNATC	1 cut(s)	1335
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	7 cut(s)	479, 692, 1530, 1796, 1949, 2070, 2844
Bse118I	RCCGGY	1 cut(s)	2383
Bse1I	ACTGG	7 cut(s)	15, 715, 1597, 1866, 1897, 2349, 2838
Bse3DI	GCAATG	5 cut(s)	1752, 2025, 2234, 2424, 2707
Bse8I	GATNNNNATC	1 cut(s)	1335
BseBI	CCWGG	8 cut(s)	163, 303, 571, 648, 887, 1014, 2499, 2758
BseCI	ATCGAT	3 cut(s)	328, 1347, 2766
BseGI	GGATG	9 cut(s)	94, 435, 565, 643, 840, 1693, 1893, 2127, 2205
BseJI	GATNNNNATC	1 cut(s)	1335
BseLI	CCNNNNNNNGG	7 cut(s)	479, 692, 1530, 1796, 1949, 2070, 2844
BseMI	GCAATG	5 cut(s)	1752, 2025, 2234, 2424, 2707
BseMII	CTCAG	5 cut(s)	289, 1244, 1836, 2158, 2874
BseNI	ACTGG	7 cut(s)	15, 715, 1597, 1866, 1897, 2349, 2838
BseRI	GAGGAG	4 cut(s)	621, 1073, 1571, 2378
BseXI	GCAGC	1 cut(s)	2443
BseYI	CCCAGC	1 cut(s)	2774
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	6 cut(s)	471, 864, 1017, 1475, 2007, 2761
BshNI	GGYRCC	1 cut(s)	95
BshVI	ATCGAT	3 cut(s)	328, 1347, 2766
BsiHKAI	GWGCWC	5 cut(s)	923, 1231, 1550, 2220, 2886
BsiHKCI	CYCGRG	1 cut(s)	2269
BsiSI	CCGG	2 cut(s)	1456, 2384
BslFI	GGGAC	3 cut(s)	1684, 2098, 2286
BslI	CCNNNNNNNGG	7 cut(s)	479, 692, 1530, 1796, 1949, 2070, 2844
BsmAI	GTCTC	5 cut(s)	349, 1841, 2036, 2147, 2863
BsmFI	GGGAC	3 cut(s)	1684, 2098, 2286
BsmI	GAATGC	1 cut(s)	2181
BsnI	GGCC	6 cut(s)	471, 864, 1017, 1475, 2007, 2761
BsoBI	CYCGRG	1 cut(s)	2269
Bsp119I	TTCGAA	1 cut(s)	2617
Bsp1286I	GDGCHC	6 cut(s)	923, 945, 1231, 1550, 2220, 2886
Bsp1407I	TGTACA	1 cut(s)	875
Bsp1720I	GCTNAGC	1 cut(s)	1150
Bsp19I	CCATGG	1 cut(s)	1254
BspACI	CCGC	5 cut(s)	563, 601, 1154, 2354, 2381
BspANI	GGCC	6 cut(s)	471, 864, 1017, 1475, 2007, 2761
BspCNI	CTCAG	5 cut(s)	288, 1243, 1837, 2157, 2873
BspDI	ATCGAT	3 cut(s)	328, 1347, 2766
BspHI	TCATGA	4 cut(s)	322, 960, 1089, 2799
BspLI	GGNNCC	4 cut(s)	97, 360, 1460, 2833
BspMI	ACCTGC	4 cut(s)	624, 1630, 1972, 2653
BspPI	GGATC	6 cut(s)	178, 682, 1344, 2177, 2826, 2839
BspT104I	TTCGAA	1 cut(s)	2617
BspT107I	GGYRCC	1 cut(s)	95
BsrDI	GCAATG	5 cut(s)	1752, 2025, 2234, 2424, 2707
BsrFI	RCCGGY	1 cut(s)	2383
BsrGI	TGTACA	1 cut(s)	875
BsrI	ACTGG	7 cut(s)	15, 715, 1597, 1866, 1897, 2349, 2838
BssAI	RCCGGY	1 cut(s)	2383
BssNAI	GTATAC	1 cut(s)	2612
BssT1I	CCWWGG	2 cut(s)	1254, 2412
Bst1107I	GTATAC	1 cut(s)	2612
Bst2UI	CCWGG	8 cut(s)	163, 303, 571, 648, 887, 1014, 2499, 2758
Bst4CI	ACNGT	9 cut(s)	118, 293, 412, 448, 754, 967, 1470, 1926, 2284
Bst6I	CTCTTC	2 cut(s)	428, 1995
BstAUI	TGTACA	1 cut(s)	875
BstBI	TTCGAA	1 cut(s)	2617
BstC8I	GCNNGC	4 cut(s)	192, 1054, 2337, 2698
BstDSI	CCRYGG	3 cut(s)	987, 1254, 1469
BstEII	GGTNACC	1 cut(s)	2467
BstENI	CCTNNNNNAGG	1 cut(s)	1794
BstF5I	GGATG	9 cut(s)	94, 435, 565, 643, 840, 1693, 1893, 2127, 2205
BstHHI	GCGC	2 cut(s)	546, 2341
BstMAI	GTCTC	5 cut(s)	349, 1841, 2036, 2147, 2863
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 1440, 2702
BstNI	CCWGG	8 cut(s)	163, 303, 571, 648, 887, 1014, 2499, 2758
BstNSI	RCATGY	3 cut(s)	194, 817, 1732
BstPI	GGTNACC	1 cut(s)	2467
BstSCI	CCNGG	9 cut(s)	161, 301, 569, 646, 885, 1012, 1455, 2497, 2756
BstSFI	CTRYAG	1 cut(s)	966
BstV1I	GCAGC	1 cut(s)	2443
BstV2I	GAAGAC	2 cut(s)	845, 1966
BstX2I	RGATCY	4 cut(s)	183, 316, 674, 2831
BstYI	RGATCY	4 cut(s)	183, 316, 674, 2831
BstZ17I	GTATAC	1 cut(s)	2612
Bsu15I	ATCGAT	3 cut(s)	328, 1347, 2766
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	6 cut(s)	471, 864, 1017, 1475, 2007, 2761
BsuTUI	ATCGAT	3 cut(s)	328, 1347, 2766
BtgI	CCRYGG	3 cut(s)	987, 1254, 1469
BtgZI	GCGATG	2 cut(s)	1136, 2762
BtrI	CACGTC	1 cut(s)	1321
BtsCI	GGATG	9 cut(s)	94, 435, 565, 643, 840, 1693, 1893, 2127, 2205
BtsI	GCAGTG	2 cut(s)	340, 1982
BtsIMutI	CAGTG	5 cut(s)	298, 340, 1842, 1859, 1982
BveI	ACCTGC	4 cut(s)	624, 1630, 1972, 2653
Cac8I	GCNNGC	4 cut(s)	192, 1054, 2337, 2698
CciI	TCATGA	4 cut(s)	322, 960, 1089, 2799
CfoI	GCGC	2 cut(s)	546, 2341
Cfr10I	RCCGGY	1 cut(s)	2383
ClaI	ATCGAT	3 cut(s)	328, 1347, 2766
DraI	TTTAAA	2 cut(s)	379, 1711
DraIII	CACNNNGTG	1 cut(s)	2330
DrdI	GACNNNNNNGTC	1 cut(s)	1210
DseDI	GACNNNNNNGTC	1 cut(s)	1210
EaeI	YGGCCR	1 cut(s)	2759
Eam1104I	CTCTTC	2 cut(s)	428, 1995
EarI	CTCTTC	2 cut(s)	428, 1995
Ecl136II	GAGCTC	2 cut(s)	2218, 2884
Eco130I	CCWWGG	2 cut(s)	1254, 2412
Eco24I	GRGCYC	3 cut(s)	945, 2220, 2886
Eco47I	GGWCC	6 cut(s)	408, 598, 889, 1459, 1619, 2847
Eco53kI	GAGCTC	2 cut(s)	2218, 2884
Eco57I	CTGAAG	2 cut(s)	1812, 2015
Eco88I	CYCGRG	1 cut(s)	2269
Eco91I	GGTNACC	1 cut(s)	2467
EcoICRI	GAGCTC	2 cut(s)	2218, 2884
EcoNI	CCTNNNNNAGG	1 cut(s)	1794
EcoO109I	RGGNCCY	2 cut(s)	1459, 2847
EcoO65I	GGTNACC	1 cut(s)	2467
EcoRI	GAATTC	1 cut(s)	2713
EcoRII	CCWGG	8 cut(s)	161, 301, 569, 646, 885, 1012, 2497, 2756
EcoT14I	CCWWGG	2 cut(s)	1254, 2412
EcoT22I	ATGCAT	1 cut(s)	2183
EcoT38I	GRGCYC	3 cut(s)	945, 2220, 2886
ErhI	CCWWGG	2 cut(s)	1254, 2412
FaqI	GGGAC	3 cut(s)	1684, 2098, 2286
FbaI	TGATCA	2 cut(s)	948, 1027
FblI	GTMKAC	2 cut(s)	1317, 2611
Fnu4HI	GCNGC	4 cut(s)	563, 2354, 2381, 2457
FokI	GGATG	9 cut(s)	101, 422, 552, 650, 847, 1700, 1880, 2114, 2192
FriOI	GRGCYC	3 cut(s)	945, 2220, 2886
Fsp4HI	GCNGC	4 cut(s)	563, 2354, 2381, 2457
FspBI	CTAG	9 cut(s)	105, 579, 680, 1224, 1563, 1826, 2031, 2585, 2888
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	2 cut(s)	545, 2340
GluI	GCNGC	4 cut(s)	563, 2354, 2381, 2457
GsaI	CCCAGC	1 cut(s)	2778
GsuI	CTGGAG	2 cut(s)	1614, 2031
HaeIII	GGCC	6 cut(s)	471, 864, 1017, 1475, 2007, 2761
HapII	CCGG	2 cut(s)	1456, 2384
HhaI	GCGC	2 cut(s)	546, 2341
Hin6I	GCGC	2 cut(s)	544, 2339
HinP1I	GCGC	2 cut(s)	544, 2339
HincII	GTYRAC	3 cut(s)	444, 1318, 2158
HindII	GTYRAC	3 cut(s)	444, 1318, 2158
HindIII	AAGCTT	3 cut(s)	370, 1389, 2442
HpaII	CCGG	2 cut(s)	1456, 2384
Hpy166II	GTNNAC	6 cut(s)	444, 878, 1318, 1888, 2158, 2612
Hpy8I	GTNNAC	6 cut(s)	444, 878, 1318, 1888, 2158, 2612
Hpy99I	CGWCG	2 cut(s)	758, 1322
HpyCH4III	ACNGT	9 cut(s)	118, 293, 412, 448, 754, 967, 1470, 1926, 2284
HpyCH4IV	ACGT	5 cut(s)	54, 1320, 1380, 1702, 1990
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 1440, 2702
HpySE526I	ACGT	5 cut(s)	54, 1320, 1380, 1702, 1990
HspAI	GCGC	2 cut(s)	544, 2339
KpnI	GGTACC	1 cut(s)	99
Ksp22I	TGATCA	2 cut(s)	948, 1027
LmnI	GCTCC	7 cut(s)	364, 1060, 1533, 1980, 2365, 2581, 2889
Lsp1109I	GCAGC	1 cut(s)	2443
MaeI	CTAG	9 cut(s)	105, 579, 680, 1224, 1563, 1826, 2031, 2585, 2888
MaeII	ACGT	5 cut(s)	54, 1320, 1380, 1702, 1990
MaeIII	GTNAC	5 cut(s)	650, 820, 2242, 2320, 2467
MflI	RGATCY	4 cut(s)	183, 316, 674, 2831
MhlI	GDGCHC	6 cut(s)	923, 945, 1231, 1550, 2220, 2886
MlsI	TGGCCA	1 cut(s)	2761
MluNI	TGGCCA	1 cut(s)	2761
MlyI	GAGTC	3 cut(s)	1925, 2038, 2531
MmeI	TCCRAC	6 cut(s)	386, 412, 481, 708, 773, 1908
Mox20I	TGGCCA	1 cut(s)	2761
Mph1103I	ATGCAT	1 cut(s)	2183
MroXI	GAANNNNTTC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	2761
MseI	TTAA	7 cut(s)	378, 1002, 1371, 1710, 1808, 2562, 2741
MslI	CAYNNNNRTG	5 cut(s)	524, 1383, 1526, 2261, 2840
Msp20I	TGGCCA	1 cut(s)	2761
MspI	CCGG	2 cut(s)	1456, 2384
MspR9I	CCNGG	9 cut(s)	163, 303, 571, 648, 887, 1014, 1457, 2499, 2758
Mva1269I	GAATGC	1 cut(s)	2181
MvaI	CCWGG	8 cut(s)	163, 303, 571, 648, 887, 1014, 2499, 2758
MwoI	GCNNNNNNNGC	3 cut(s)	176, 1440, 2702
NciI	CCSGG	1 cut(s)	1457
NcoI	CCATGG	1 cut(s)	1254
NlaIV	GGNNCC	4 cut(s)	97, 360, 1460, 2833
NmuCI	GTSAC	4 cut(s)	650, 2242, 2320, 2467
NsbI	TGCGCA	1 cut(s)	545
NsiI	ATGCAT	1 cut(s)	2183
NspI	RCATGY	3 cut(s)	194, 817, 1732
NspV	TTCGAA	1 cut(s)	2617
OliI	CACNNNNGTG	2 cut(s)	1383, 1526
PaeI	GCATGC	1 cut(s)	194
PagI	TCATGA	4 cut(s)	322, 960, 1089, 2799
PaqCI	CACCTGC	1 cut(s)	2653
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	1 cut(s)	2181
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	7 cut(s)	133, 297, 716, 1236, 2399, 2819, 2864
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	4 cut(s)	564, 2355, 2382, 2458
PleI	GAGTC	3 cut(s)	1924, 2038, 2530
PpsI	GAGTC	3 cut(s)	1924, 2038, 2530
PpuMI	RGGWCCY	2 cut(s)	1459, 2847
Psp124BI	GAGCTC	2 cut(s)	2220, 2886
Psp5II	RGGWCCY	2 cut(s)	1459, 2847
Psp6I	CCWGG	8 cut(s)	161, 301, 569, 646, 885, 1012, 2497, 2756
PspEI	GGTNACC	1 cut(s)	2467
PspFI	CCCAGC	1 cut(s)	2774
PspGI	CCWGG	8 cut(s)	161, 301, 569, 646, 885, 1012, 2497, 2756
PspN4I	GGNNCC	4 cut(s)	97, 360, 1460, 2833
PspPPI	RGGWCCY	2 cut(s)	1459, 2847
PsuI	RGATCY	4 cut(s)	183, 316, 674, 2831
RseI	CAYNNNNRTG	5 cut(s)	524, 1383, 1526, 2261, 2840
SacI	GAGCTC	2 cut(s)	2220, 2886
SalI	GTCGAC	1 cut(s)	1316
SaqAI	TTAA	7 cut(s)	378, 1002, 1371, 1710, 1808, 2562, 2741
SatI	GCNGC	4 cut(s)	563, 2354, 2381, 2457
ScaI	AGTACT	2 cut(s)	109, 1923
SchI	GAGTC	3 cut(s)	1925, 2038, 2531
ScrFI	CCNGG	9 cut(s)	163, 303, 571, 648, 887, 1014, 1457, 2499, 2758
SduI	GDGCHC	6 cut(s)	923, 945, 1231, 1550, 2220, 2886
SfcI	CTRYAG	1 cut(s)	966
SfuI	TTCGAA	1 cut(s)	2617
SinI	GGWCC	6 cut(s)	408, 598, 889, 1459, 1619, 2847
SmiMI	CAYNNNNRTG	5 cut(s)	524, 1383, 1526, 2261, 2840
SmlI	CTYRAG	3 cut(s)	916, 1745, 2575
SmoI	CTYRAG	3 cut(s)	916, 1745, 2575
SpeI	ACTAGT	2 cut(s)	104, 578
SphI	GCATGC	1 cut(s)	194
SsiI	CCGC	5 cut(s)	563, 601, 1154, 2354, 2381
SspI	AATATT	4 cut(s)	199, 1273, 1635, 1812
SspMI	CTAG	9 cut(s)	105, 579, 680, 1224, 1563, 1826, 2031, 2585, 2888
SstI	GAGCTC	2 cut(s)	2220, 2886
StyD4I	CCNGG	9 cut(s)	161, 301, 569, 646, 885, 1012, 1455, 2497, 2756
StyI	CCWWGG	2 cut(s)	1254, 2412
TaaI	ACNGT	9 cut(s)	118, 293, 412, 448, 754, 967, 1470, 1926, 2284
TaiI	ACGT	5 cut(s)	57, 1323, 1383, 1705, 1993
TatI	WGTACW	5 cut(s)	107, 278, 875, 1921, 2202
TauI	GCSGC	3 cut(s)	565, 2356, 2383
TfiI	GAWTC	7 cut(s)	133, 297, 716, 1236, 2399, 2819, 2864
Tru1I	TTAA	7 cut(s)	378, 1002, 1371, 1710, 1808, 2562, 2741
Tru9I	TTAA	7 cut(s)	378, 1002, 1371, 1710, 1808, 2562, 2741
TscAI	CASTG	5 cut(s)	298, 340, 1849, 1866, 1989
TseFI	GTSAC	4 cut(s)	650, 2242, 2320, 2467
TseI	GCWGC	1 cut(s)	2456
Tsp45I	GTSAC	4 cut(s)	650, 2242, 2320, 2467
TspGWI	ACGGA	1 cut(s)	976
TspRI	CASTG	5 cut(s)	298, 340, 1849, 1866, 1989
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	6 cut(s)	408, 598, 889, 1459, 1619, 2847
XagI	CCTNNNNNAGG	1 cut(s)	1794
XapI	RAATTY	3 cut(s)	743, 1504, 2713
XceI	RCATGY	3 cut(s)	194, 817, 1732
XcmI	CCANNNNNNNNNTGG	2 cut(s)	480, 1483
XmiI	GTMKAC	2 cut(s)	1317, 2611
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	9 cut(s)	105, 579, 680, 1224, 1563, 1826, 2031, 2585, 2888
ZrmI	AGTACT	2 cut(s)	109, 1923
Zsp2I	ATGCAT	1 cut(s)	2183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.