Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Reverse (-)

16444520 .. 16445506

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1104200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTTCCCTAGCCAGGCAAAAGCAGCCTCACTTTGTCCTAATCTCCCTCATGGCACAAGGCCATATGATGCCCATGGTAGACATGGCTAGACTTATTGCAGAGCGTGGGGTGATGGTTAGCTTGGTCACCACTCCATACAATGCCTCGAGATTCGACACGACAATTTCTAGAGCAAAAGAATCTGGACTTCCAATTGATCTTGTGCAAATACCATTTCCATGCCAAGAAGTCGGACTTCCAATTGGGTGTGAGAATCTTGACAGTTTACCCTCAAGAGACCCGCTCAGAAAATTTTATAAGGCTCTAAGTTTGCTACAAGAACCGGTCGAAAACTATCTTCGCAAGCAAAAGCTTCATCCCAGCTGCATAATCTCGGACAAGGCCCACTGGTGGACTTCGAAAACAGCTCAGAAGTTCAATGTTCCTAGGATTGTTTTCCATGGGATGTGCTGCTTCTCACTGTTGAGCTCTCACAATGTGAAAGCCTACAATGCTCACAATTCTGTCACCTCTGACCTTGAACCTTTTGTGGTGCCAGGGCTGCCCCATAGGATTGAGATCACTAAGGCTCAGCTGCCTGGAACATTTGTTACCCAGACCGATTTAGATGACTTTCGGGACAAAATACAAGAAGCAGAATTAACATCCTATGCGGTTGTAGTGAATAGCTTTGATGAACTGGAGCATGGGTGTGCTGAGGAGTTGAGCAAGGTACTTGAGAAAAAAGTTTGGTGCATTGGGCCGGTTTCCTTGTGCAACAAGAACAATATGGACAGGTTTTCTAGAGGCAACAAAGCCTCAATTGATGAGAGGCAATGCTTGGAATGGCTCGAATCTATGAAACCAAGGTCAGTTATCTATGCGTGTCTTGGTAGCCATTGTAGGCTAGTTCCATCACAACTGATTGAGCTTGCCCTTGGTTTAGAAGTTTCAAGGCAGCCATTTATTTGGGTAGTCAAAACAAGTGAGAAGCATTTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

329

Amino Acids

37.08

Weight (kDa)

7.58

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	535
AccBSI	CCGCTC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	2 cut(s)	284, 656
AcsI	RAATTY	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	2 cut(s)	15, 393
AgeI	ACCGGT	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	421, 524, 936
AjnI	CCWGG	3 cut(s)	14, 538, 580
AluBI	AGCT	8 cut(s)	123, 355, 366, 410, 471, 577, 672, 913
AluI	AGCT	8 cut(s)	123, 355, 366, 410, 471, 577, 672, 913
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	3 cut(s)	61, 384, 743
ApeKI	GCWGC	6 cut(s)	25, 366, 453, 544, 577, 940
ApoI	RAATTY	1 cut(s)	293
AsiGI	ACCGGT	1 cut(s)	325
AspA2I	CCTAGG	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	385, 743
AsuHPI	GGTGA	3 cut(s)	121, 124, 502
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	148
AvrII	CCTAGG	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	6 cut(s)	37, 353, 440, 531, 564, 952
BccI	CCATC	2 cut(s)	109, 904
BciT130I	CCWGG	3 cut(s)	16, 540, 582
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	6 cut(s)	11, 90, 171, 429, 786, 890
BisI	GCNGC	6 cut(s)	26, 367, 454, 545, 578, 941
BlnI	CCTAGG	1 cut(s)	428
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	6 cut(s)	27, 368, 455, 546, 579, 942
Bme1390I	CCNGG	3 cut(s)	16, 540, 582
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	385, 743
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	3 cut(s)	16, 540, 582
BmsI	GCATC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu1102I	GCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	2 cut(s)	259, 740
BsaBI	GATNNNNATC	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	6 cut(s)	75, 428, 442, 539, 848, 919
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 393
Bse118I	RCCGGY	2 cut(s)	325, 745
Bse1I	ACTGG	2 cut(s)	395, 687
Bse3DI	GCAATG	1 cut(s)	824
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	16, 540, 582
BseDI	CCNNGG	6 cut(s)	75, 428, 442, 539, 848, 919
BseGI	GGATG	3 cut(s)	358, 453, 647
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	2 cut(s)	15, 393
BseMI	GCAATG	1 cut(s)	824
BseMII	CTCAG	4 cut(s)	301, 425, 587, 690
BseNI	ACTGG	2 cut(s)	395, 687
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	6 cut(s)	37, 353, 440, 531, 564, 952
BseYI	CCCAGC	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	3 cut(s)	63, 386, 745
BshNI	GGYRCC	1 cut(s)	535
BshTI	ACCGGT	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	326, 746
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	2 cut(s)	15, 393
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	3 cut(s)	63, 386, 745
Bso31I	GGTCTC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	199, 561
Bsp1720I	GCTNAGC	1 cut(s)	573
Bsp19I	CCATGG	2 cut(s)	75, 442
BspACI	CCGC	2 cut(s)	284, 656
BspANI	GGCC	3 cut(s)	63, 386, 745
BspCNI	CTCAG	4 cut(s)	300, 424, 586, 691
BspLI	GGNNCC	1 cut(s)	537
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	535
BspTNI	GGTCTC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	824
BsrFI	RCCGGY	2 cut(s)	325, 745
BsrI	ACTGG	2 cut(s)	395, 687
BssAI	RCCGGY	2 cut(s)	325, 745
BssECI	CCNNGG	6 cut(s)	75, 428, 442, 539, 848, 919
BssMI	GATC	2 cut(s)	199, 561
BssT1I	CCWWGG	5 cut(s)	75, 428, 442, 848, 919
Bst2UI	CCWGG	3 cut(s)	16, 540, 582
Bst4CI	ACNGT	2 cut(s)	266, 465
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	347, 915
BstDEI	CTNAG	6 cut(s)	287, 308, 411, 567, 573, 699
BstDSI	CCRYGG	2 cut(s)	75, 442
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	358, 453, 647
BstKTI	GATC	2 cut(s)	202, 564
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	199, 561
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 25, 494, 544
BstNI	CCWGG	3 cut(s)	16, 540, 582
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	3 cut(s)	14, 538, 580
BstV1I	GCAGC	6 cut(s)	37, 353, 440, 531, 564, 952
BstXI	CCANNNNNNTGG	1 cut(s)	951
BsuRI	GGCC	3 cut(s)	63, 386, 745
BtgI	CCRYGG	2 cut(s)	75, 442
BtsCI	GGATG	3 cut(s)	358, 453, 647
BtsIMutI	CAGTG	2 cut(s)	388, 461
Cac8I	GCNNGC	2 cut(s)	347, 915
Cfr10I	RCCGGY	2 cut(s)	325, 745
Cfr13I	GGNCC	2 cut(s)	385, 743
Csp6I	GTAC	1 cut(s)	716
CspAI	ACCGGT	1 cut(s)	325
CviAII	CATG	6 cut(s)	52, 76, 85, 222, 443, 689
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	6 cut(s)	287, 308, 411, 567, 573, 699
DpnI	GATC	2 cut(s)	201, 563
DpnII	GATC	2 cut(s)	199, 561
DraIII	CACNNNGTG	1 cut(s)	481
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	5 cut(s)	75, 428, 442, 848, 919
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	148
Eco91I	GGTNACC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	471
EcoO65I	GGTNACC	1 cut(s)	127
EcoRII	CCWGG	3 cut(s)	14, 538, 580
EcoT14I	CCWWGG	5 cut(s)	75, 428, 442, 848, 919
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	5 cut(s)	75, 428, 442, 848, 919
FaeI	CATG	6 cut(s)	55, 79, 88, 225, 446, 692
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	6 cut(s)	51, 75, 84, 221, 442, 688
FauI	CCCGC	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	6 cut(s)	26, 367, 454, 545, 578, 941
FokI	GGATG	3 cut(s)	345, 460, 634
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	6 cut(s)	26, 367, 454, 545, 578, 941
FspBI	CTAG	6 cut(s)	11, 90, 171, 429, 786, 890
GluI	GCNGC	6 cut(s)	26, 367, 454, 545, 578, 941
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	63, 386, 745
HapII	CCGG	2 cut(s)	326, 746
Hin1II	CATG	6 cut(s)	55, 79, 88, 225, 446, 692
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	153, 182, 256, 836
HpaII	CCGG	2 cut(s)	326, 746
HphI	GGTGA	3 cut(s)	121, 124, 502
Hpy166II	GTNNAC	3 cut(s)	82, 269, 396
Hpy188I	TCNGA	5 cut(s)	236, 290, 379, 414, 517
Hpy188III	TCNNGA	7 cut(s)	150, 171, 186, 260, 276, 620, 786
Hpy8I	GTNNAC	3 cut(s)	82, 269, 396
HpyCH4III	ACNGT	2 cut(s)	266, 465
HpyCH4V	TGCA	5 cut(s)	101, 208, 369, 738, 759
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 25, 494, 544
HpyF3I	CTNAG	6 cut(s)	287, 308, 411, 567, 573, 699
Hsp92II	CATG	6 cut(s)	55, 79, 88, 225, 446, 692
Kzo9I	GATC	2 cut(s)	199, 561
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	6 cut(s)	37, 353, 440, 531, 564, 952
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	6 cut(s)	11, 90, 171, 429, 786, 890
MaeIII	GTNAC	3 cut(s)	127, 508, 592
MalI	GATC	2 cut(s)	201, 563
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	2 cut(s)	199, 561
MboII	GAAGA	1 cut(s)	332
MfeI	CAATTG	3 cut(s)	195, 243, 804
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	7 cut(s)	165, 195, 243, 293, 502, 641, 804
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	9 cut(s)	39, 59, 157, 283, 523, 694, 782, 807, 811
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	2 cut(s)	220, 693
MspA1I	CMGCKG	2 cut(s)	366, 577
MspI	CCGG	2 cut(s)	326, 746
MspR9I	CCNGG	3 cut(s)	16, 540, 582
MunI	CAATTG	3 cut(s)	195, 243, 804
MvaI	CCWGG	3 cut(s)	16, 540, 582
MwoI	GCNNNNNNNGC	4 cut(s)	11, 25, 494, 544
NcoI	CCATGG	2 cut(s)	75, 442
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	2 cut(s)	199, 561
NlaIII	CATG	6 cut(s)	55, 79, 88, 225, 446, 692
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	2 cut(s)	127, 508
NspV	TTCGAA	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	153, 182, 256, 836
PinAI	ACCGGT	1 cut(s)	325
PkrI	GCNGC	6 cut(s)	27, 368, 455, 546, 579, 942
PsiI	TTATAA	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	473
Psp6I	CCWGG	3 cut(s)	14, 538, 580
PspEI	GGTNACC	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	3 cut(s)	14, 538, 580
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	385, 743
PsrI	GAACNNNNNNTAC	2 cut(s)	577, 609
PvuII	CAGCTG	2 cut(s)	366, 577
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
RseI	CAYNNNNRTG	2 cut(s)	220, 693
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	6 cut(s)	26, 367, 454, 545, 578, 941
Sau3AI	GATC	2 cut(s)	199, 561
Sau96I	GGNCC	2 cut(s)	385, 743
ScrFI	CCNGG	3 cut(s)	16, 540, 582
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	220, 693
SmlI	CTYRAG	3 cut(s)	148, 274, 719
SmoI	CTYRAG	3 cut(s)	148, 274, 719
Sse9I	AATT	7 cut(s)	165, 195, 243, 293, 502, 641, 804
SsiI	CCGC	2 cut(s)	284, 656
SspMI	CTAG	6 cut(s)	11, 90, 171, 429, 786, 890
SstI	GAGCTC	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	14, 538, 580
StyI	CCWWGG	5 cut(s)	75, 428, 442, 848, 919
TaaI	ACNGT	2 cut(s)	266, 465
TaqI	TCGA	5 cut(s)	149, 156, 330, 401, 834
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	7 cut(s)	165, 195, 243, 293, 502, 641, 804
TfiI	GAWTC	4 cut(s)	153, 182, 256, 836
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	2 cut(s)	395, 468
TseFI	GTSAC	2 cut(s)	127, 508
TseI	GCWGC	6 cut(s)	25, 366, 453, 544, 577, 940
Tsp45I	GTSAC	2 cut(s)	127, 508
TspDTI	ATGAA	3 cut(s)	347, 693, 857
TspRI	CASTG	2 cut(s)	395, 468
XapI	RAATTY	1 cut(s)	293
XbaI	TCTAGA	2 cut(s)	170, 785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	148
XmaJI	CCTAGG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	6 cut(s)	11, 90, 171, 429, 786, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.