Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Reverse (-)

32570452 .. 32570900

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG260300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTTAGCTTGGTCACCACTCCATACAATGCCTCAAGATTTGAGTCATGCATTTCTCGAGCAAGAGATCAATTCGAACTTCCAATATCCATTGTGAAAATCCCATTTCCATGCCAAGAAGTGGGACTTCCAATGGGGAGTGAGAGTCTTGACACCTTACCATCTCGAAATCTGCTGAGGAAGTTCTTTAAGGCTCTGAGCATGCTGCAAGAGCCACTAGAAAAATACCTTGAAGACCAGAAGCTTCAGCCATGGTGCATAATCTCGGACAAGGCCCTCTCGTGGACTTCAAAAACAGCTCAGAAGTTCAATATTCCAAGGATTGTTTTCCATGGAATGGCTGCCCCAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

7.7

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	121, 337
AcuI	CTGAAG	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	121, 282, 337
AgsI	TTSAA	3 cut(s)	233, 291, 310
AluBI	AGCT	3 cut(s)	9, 244, 299
AluI	AGCT	3 cut(s)	9, 244, 299
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	205, 341
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	7
AsuII	TTCGAA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	57
BauI	CACGAG	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	192, 328
BccI	CCATC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	2 cut(s)	206, 342
BlsI	GCNGC	2 cut(s)	207, 343
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	251, 317, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 282, 337
BseDI	CCNNGG	3 cut(s)	251, 317, 331
BseLI	CCNNNNNNNGG	3 cut(s)	121, 282, 337
BseMII	CTCAG	3 cut(s)	167, 188, 314
BseXI	GCAGC	2 cut(s)	192, 328
BshFI	GGCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	121, 282, 337
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	67
Bsp19I	CCATGG	2 cut(s)	251, 331
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	3 cut(s)	168, 189, 313
BspT104I	TTCGAA	1 cut(s)	75
BssECI	CCNNGG	3 cut(s)	251, 317, 331
BssMI	GATC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	280
BssT1I	CCWWGG	3 cut(s)	251, 317, 331
Bst2BI	CACGAG	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	176, 197, 300
BstDSI	CCRYGG	2 cut(s)	251, 331
BstEII	GGTNACC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	192, 328
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	2 cut(s)	251, 331
Cac8I	GCNNGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	274
CviAII	CATG	5 cut(s)	48, 111, 202, 252, 332
CviJI	RGCY	8 cut(s)	9, 194, 214, 244, 250, 275, 299, 341
CviKI_1	RGCY	8 cut(s)	9, 194, 214, 244, 250, 275, 299, 341
DdeI	CTNAG	3 cut(s)	176, 197, 300
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco130I	CCWWGG	3 cut(s)	251, 317, 331
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	13
EcoT14I	CCWWGG	3 cut(s)	251, 317, 331
EcoT22I	ATGCAT	1 cut(s)	53
ErhI	CCWWGG	3 cut(s)	251, 317, 331
FaeI	CATG	5 cut(s)	51, 114, 205, 255, 335
FaiI	YATR	7 cut(s)	25, 49, 112, 203, 253, 260, 333
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	5 cut(s)	47, 110, 201, 251, 331
Fnu4HI	GCNGC	2 cut(s)	206, 342
Fsp4HI	GCNGC	2 cut(s)	206, 342
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	2 cut(s)	206, 342
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	5 cut(s)	51, 114, 205, 255, 335
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	2 cut(s)	44, 145
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	3 cut(s)	198, 268, 303
Hpy188III	TCNNGA	4 cut(s)	36, 57, 149, 165
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	51, 208, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	3 cut(s)	176, 197, 300
Hsp92II	CATG	5 cut(s)	51, 114, 205, 255, 335
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	1 cut(s)	251
Lsp1109I	GCAGC	2 cut(s)	192, 328
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	53, 154
MnlI	CCTC	4 cut(s)	43, 171, 287, 343
Mph1103I	ATGCAT	1 cut(s)	53
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	211
NcoI	CCATGG	2 cut(s)	251, 331
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	5 cut(s)	51, 114, 205, 255, 335
NmuCI	GTSAC	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	53
NspI	RCATGY	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	57
PflMI	CCANNNNNTGG	2 cut(s)	121, 337
PkrI	GCNGC	2 cut(s)	207, 343
PleI	GAGTC	2 cut(s)	52, 153
PpsI	GAGTC	2 cut(s)	52, 153
PspEI	GGTNACC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	206, 342
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	53, 154
SetI	ASST	5 cut(s)	11, 158, 231, 246, 301
Sfr274I	CTCGAG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	34, 57
SmoI	CTYRAG	2 cut(s)	34, 57
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	1 cut(s)	71
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	218
StyI	CCWWGG	3 cut(s)	251, 317, 331
TaqI	TCGA	3 cut(s)	58, 75, 166
TasI	AATT	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	205, 341
Tsp45I	GTSAC	1 cut(s)	13
Van91I	CCANNNNNTGG	2 cut(s)	121, 337
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.