Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010073.1

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Forward (+)

52796 .. 54032

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010073.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggcttcacaagccaggcaaaaggagcaacctcactttgtcttagtgcctcttatggcacaagggcatatgattcccatgatagacatagctaggctcgttacagagcgtggtgtgatggttagcttggtcaccactccatacaatgcctcaagatttgagtcatgcatttctcaagcaagagatcaatccggacttccaatatccattgtgaaaatctcattttcgtgccaagaagtgggacttccaatggggagtgagagtcttgacaccttactatctcgaaatctgctgaggaagttctttaaggctctgagcatgctgcaagaaccactagaaaagtaccttgaagaccagaagcttcagccatgctttaatgcacttgaacttgggtgtgctgaggagttggagaaggtgtttgataaaaaggtttggtgcattggaccagtttccttatgctacaagagctattcagaaaaactttctagaggtaacaaatcctcaattgatgagagtcaatgcttgcaatggcttgaatcaatgcaaccaaggtctgtcatctacgtttgtcttggtagcctttgtagattagtcccatcacaactgatagagcttggactaggcttagaagcctcaggaaaactctttatctgggtaatcaaaacatgtgggaagtatgaagaattggagaagtggttagtggaggagaggtttaaggaaaggatcacaggaagaggccttttgatcaagggttgggctccccaagttcttattctctcaagtccagcaattggagggttcttaactcattgtggttggaactcaagcatagaaggggcatgttctggtgtgctaattgtcaggtgcatcacaagtatgaaaactatgtgcaaatttgtgtatgatgtgccctactcccaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

308

Amino Acids

34.54

Weight (kDa)

8.14

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	238, 791
AccIII	TCCGGA	1 cut(s)	191
AclWI	GGATC	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	238, 791
AflIII	ACRYGT	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	350, 386, 536
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	756, 788
AluBI	AGCT	5 cut(s)	92, 126, 361, 468, 613
AluI	AGCT	5 cut(s)	92, 126, 361, 468, 613
AlwI	GGATC	1 cut(s)	731
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	893
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	912
BanII	GRGCYC	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	357
BbvCI	CCTCAGC	2 cut(s)	293, 399
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	112, 604
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	1 cut(s)	744
BfaI	CTAG	4 cut(s)	93, 335, 486, 620
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	357
Bpu10I	CCTNAGC	2 cut(s)	293, 399
BpuEI	CTTGAG	4 cut(s)	136, 159, 763, 808
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	8 cut(s)	247, 277, 401, 431, 680, 695, 710, 725
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 791
Bse1I	ACTGG	1 cut(s)	446
Bse21I	CCTNAGG	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	533
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	238, 791
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	4 cut(s)	284, 305, 390, 648
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	416, 719
BseSI	GKGCMC	1 cut(s)	912
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	255, 578
BslI	CCNNNNNNNGG	2 cut(s)	238, 791
BsmFI	GGGAC	2 cut(s)	255, 578
BsnI	GGCC	1 cut(s)	738
Bsp1286I	GDGCHC	2 cut(s)	760, 912
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	184, 723, 744
BspANI	GGCC	1 cut(s)	738
BspCNI	CTCAG	4 cut(s)	285, 306, 391, 647
BspEI	TCCGGA	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	3 cut(s)	184, 723, 744
BssT1I	CCWWGG	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	320, 524
BstDEI	CTNAG	6 cut(s)	43, 293, 314, 399, 625, 634
BstEII	GGTNACC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	187, 726, 747
BstMBI	GATC	3 cut(s)	184, 723, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 25, 465
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	3 cut(s)	322, 669, 843
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	912
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	738
Cac8I	GCNNGC	2 cut(s)	320, 524
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	6 cut(s)	79, 165, 319, 369, 666, 840
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	6 cut(s)	43, 293, 314, 399, 625, 634
DpnI	GATC	3 cut(s)	186, 725, 746
DpnII	GATC	3 cut(s)	184, 723, 744
Eam1104I	CTCTTC	1 cut(s)	727
EarI	CTCTTC	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	548
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	6 cut(s)	82, 168, 322, 372, 669, 843
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	2 cut(s)	255, 578
FatI	CATG	6 cut(s)	78, 164, 318, 368, 665, 839
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	4 cut(s)	93, 335, 486, 620
GluI	GCNGC	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	738
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	6 cut(s)	82, 168, 322, 372, 669, 843
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	5 cut(s)	73, 161, 262, 514, 536
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	315, 475
Hpy188III	TCNNGA	6 cut(s)	153, 192, 266, 282, 486, 636
HpyAV	CCTTC	2 cut(s)	406, 827
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	8 cut(s)	168, 325, 380, 438, 526, 544, 867, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 25, 465
HpyF3I	CTNAG	6 cut(s)	43, 293, 314, 399, 625, 634
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	6 cut(s)	82, 168, 322, 372, 669, 843
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	3 cut(s)	184, 723, 744
LmnI	GCTCC	2 cut(s)	25, 763
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	876
MaeI	CTAG	4 cut(s)	93, 335, 486, 620
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	3 cut(s)	100, 130, 491
MalI	GATC	3 cut(s)	186, 725, 746
MboI	GATC	3 cut(s)	184, 723, 744
MboII	GAAGA	3 cut(s)	362, 692, 744
MfeI	CAATTG	2 cut(s)	504, 789
MhlI	GDGCHC	2 cut(s)	760, 912
MluCI	AATT	5 cut(s)	504, 683, 789, 855, 893
MlyI	GAGTC	3 cut(s)	170, 271, 523
MmeI	TCCRAC	2 cut(s)	387, 797
Mph1103I	ATGCAT	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	191
MseI	TTAA	4 cut(s)	306, 375, 714, 803
MslI	CAYNNNNRTG	2 cut(s)	226, 875
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	2 cut(s)	504, 789
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	11, 25, 465
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	3 cut(s)	184, 723, 744
NlaIII	CATG	6 cut(s)	82, 168, 322, 372, 669, 843
NlaIV	GGNNCC	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	3 cut(s)	322, 669, 843
PaeI	GCATGC	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	738
PciI	ACATGT	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	73, 536
PflMI	CCANNNNNTGG	2 cut(s)	238, 791
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	3 cut(s)	169, 270, 522
PpsI	GAGTC	3 cut(s)	169, 270, 522
PscI	ACATGT	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	443
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	226, 875
SaqAI	TTAA	4 cut(s)	306, 375, 714, 803
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	3 cut(s)	184, 723, 744
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	3 cut(s)	170, 271, 523
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	760, 912
SfaNI	GCATC	1 cut(s)	876
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	226, 875
SmlI	CTYRAG	4 cut(s)	151, 174, 778, 823
SmoI	CTYRAG	4 cut(s)	151, 174, 778, 823
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	5 cut(s)	504, 683, 789, 855, 893
SseBI	AGGCCT	1 cut(s)	738
SspMI	CTAG	4 cut(s)	93, 335, 486, 620
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	548
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	283
TasI	AATT	5 cut(s)	504, 683, 789, 855, 893
TfiI	GAWTC	2 cut(s)	73, 536
Tru1I	TTAA	4 cut(s)	306, 375, 714, 803
Tru9I	TTAA	4 cut(s)	306, 375, 714, 803
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	693, 893
Van91I	CCANNNNNTGG	2 cut(s)	238, 791
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	893
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	3 cut(s)	322, 669, 843
XspI	CTAG	4 cut(s)	93, 335, 486, 620
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.