Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005416.1

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Reverse (-)

189892 .. 191389

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005416.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atggcttcacaagccaggcaaaagaagcagcctcactttgtcttggcgccacttatggcacaagggcatatgattcgcatgatagacatggctaggctcttcgcagagcggggtgtcatggttagcttggtcaccactccatacaatgcctcaagatttgagtcatgcatttctcgagcaagagatcaattcggacttccaatatccattgtgaaaatcccatttccgtgccaagaagtgggacttccaatggggagtgagagtcttgacaccttaccatctcgaaatctgctgaggaagttctttaaggctctgagcatgctgcaagagccactagaaaagtaccttgaagaccagaagcttcagccatggtgcataatctcggacaaggccctctcgtggacttcaaaaacagctcagaagttcaatattccaaggattaggattgagattactaaggctcagctaccaagagcacttgtcacgaaaccggatttggatgacttcagggacaagaatcaagaggctgaagcgaaatcgtttggggtggtggtgaatagctttaatgcacttgaacatgggtgtgctgaggagtttgagaaggtatttgataaaaaggtttggtgcattggaccagtttccttatgctacaagagcaattcagataggttttctagaggtaacaaattctcaattgatgagagtccatgcttgcaatggcttgaatcaatgcaaccaaggtctgtcatctatgtttgtcttggtagcctttgtagattagtcctatcacaactaatagagcttggactaggcgtagaagcctcaggaaaaccctttatctgggtaatcaaaacatgtgggaagtatgaagaattggagaagtggttagtgcaggagagatttgaggaaatgatcaaaggaagaggccttttgatcaagggttgggctccccaagttcttattctctcaagtccagcaattggagggttcttaactcattgtgaggttttaaagatcggtgttcgggttggtgtggagattcctgttagatggggggatgaagagaaagttggagtgttggtgaagaaagatggggtgaagaaggcaatacaaacactgatggatggaggtgaagaaggagaaaagagaagaaagagagcaacaaaaattggagagaagggaagaagagccatggaaaaaggaggttcatcgcactcaagcatgtcttctttgattcaagatgttaggcaattacatgaagccactcgaaacaaaggtcagaagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

429

Amino Acids

48.37

Weight (kDa)

9.32

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	2 cut(s)	238, 980
AccBSI	CCGCTC	1 cut(s)	109
AciI	CCGC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	686
AcuI	CTGAAG	3 cut(s)	347, 490, 549
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	4 cut(s)	238, 399, 840, 980
AflIII	ACRYGT	1 cut(s)	854
AgsI	TTSAA	6 cut(s)	350, 408, 427, 575, 725, 1238
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	6 cut(s)	479, 511, 945, 977, 1053, 1085
AluBI	AGCT	7 cut(s)	126, 361, 416, 466, 561, 802, 1285
AluI	AGCT	7 cut(s)	126, 361, 416, 466, 561, 802, 1285
Alw21I	GWGCWC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	390, 925
ApeKI	GCWGC	2 cut(s)	28, 322
ApoI	RAATTY	1 cut(s)	686
ArsI	GACNNNNNNTTYG	1 cut(s)	1261
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	391, 632
AsuHPI	GGTGA	5 cut(s)	124, 565, 1093, 1108, 1142
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	632
AxyI	CCTNAGG	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	949
BauI	CACGAG	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	357, 1218
Bbv12I	GWGCWC	1 cut(s)	478
BbvCI	CCTCAGC	2 cut(s)	293, 588
BbvI	GCAGC	2 cut(s)	40, 309
BccI	CCATC	5 cut(s)	286, 1044, 1085, 1114, 1118
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	2 cut(s)	912, 933
BfaI	CTAG	4 cut(s)	93, 335, 675, 809
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	2 cut(s)	29, 323
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	2 cut(s)	30, 324
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	391, 632
BmiI	GGNNCC	2 cut(s)	48, 948
BmrFI	CCNGG	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	357, 1218
Bpu10I	CCTNAGC	2 cut(s)	293, 588
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	3 cut(s)	136, 952, 1201
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	368, 434, 737, 1191
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	6 cut(s)	247, 277, 869, 899, 1065, 1095
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 399, 840, 980
Bse1I	ACTGG	1 cut(s)	635
Bse21I	CCTNAGG	1 cut(s)	823
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	4 cut(s)	368, 434, 737, 1191
BseGI	GGATG	3 cut(s)	505, 1063, 1129
BseLI	CCNNNNNNNGG	4 cut(s)	238, 399, 840, 980
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	6 cut(s)	284, 305, 431, 476, 579, 837
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	2 cut(s)	40, 309
BsgI	GTGCAG	1 cut(s)	911
BshFI	GGCC	2 cut(s)	392, 927
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	2 cut(s)	255, 524
BslI	CCNNNNNNNGG	4 cut(s)	238, 399, 840, 980
BsmFI	GGGAC	2 cut(s)	255, 524
BsnI	GGCC	2 cut(s)	392, 927
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	478, 949
Bsp143I	GATC	4 cut(s)	184, 912, 933, 1014
Bsp1720I	GCTNAGC	1 cut(s)	462
Bsp19I	CCATGG	2 cut(s)	368, 1191
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	392, 927
BspCNI	CTCAG	6 cut(s)	285, 306, 430, 475, 580, 836
BspLI	GGNNCC	2 cut(s)	48, 948
BspQI	GCTCTTC	2 cut(s)	104, 1180
BspT107I	GGYRCC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	4 cut(s)	368, 434, 737, 1191
BssMI	GATC	4 cut(s)	184, 912, 933, 1014
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	397
BssT1I	CCWWGG	4 cut(s)	368, 434, 737, 1191
Bst2BI	CACGAG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	16
Bst6I	CTCTTC	4 cut(s)	104, 916, 1056, 1180
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	320, 713
BstDEI	CTNAG	7 cut(s)	293, 314, 417, 456, 462, 588, 823
BstDSI	CCRYGG	2 cut(s)	368, 1191
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	3 cut(s)	505, 1063, 1129
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	4 cut(s)	187, 915, 936, 1017
BstMBI	GATC	4 cut(s)	184, 912, 933, 1014
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 25, 328, 654
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	3 cut(s)	322, 858, 1225
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	40, 309
BstV2I	GAAGAC	2 cut(s)	357, 1218
Bsu36I	CCTNAGG	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	392, 927
BtgI	CCRYGG	2 cut(s)	368, 1191
BtgZI	GCGATG	1 cut(s)	1194
BtsCI	GGATG	3 cut(s)	505, 1063, 1129
BtsIMutI	CAGTG	1 cut(s)	1115
Cac8I	GCNNGC	2 cut(s)	320, 713
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	391, 632
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	838, 873
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	7 cut(s)	293, 314, 417, 456, 462, 588, 823
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	4 cut(s)	186, 914, 935, 1016
DpnII	GATC	4 cut(s)	184, 912, 933, 1014
DraI	TTTAAA	1 cut(s)	1011
Eam1104I	CTCTTC	4 cut(s)	104, 916, 1056, 1180
EarI	CTCTTC	4 cut(s)	104, 916, 1056, 1180
Eco130I	CCWWGG	4 cut(s)	368, 434, 737, 1191
Eco147I	AGGCCT	1 cut(s)	927
Eco24I	GRGCYC	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	3 cut(s)	347, 490, 549
Eco81I	CCTNAGG	1 cut(s)	823
Eco88I	CYCGRG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	4 cut(s)	368, 434, 737, 1191
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	949
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
ErhI	CCWWGG	4 cut(s)	368, 434, 737, 1191
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 1210, 1242
FaqI	GGGAC	2 cut(s)	255, 524
FauI	CCCGC	1 cut(s)	102
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	2 cut(s)	912, 933
Fnu4HI	GCNGC	2 cut(s)	29, 323
FokI	GGATG	3 cut(s)	512, 1070, 1136
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	2 cut(s)	29, 323
FspBI	CTAG	4 cut(s)	93, 335, 675, 809
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	29, 323
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	392, 927
HapII	CCGG	1 cut(s)	491
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	2 cut(s)	359, 1283
HinfI	GANTC	8 cut(s)	73, 161, 262, 517, 703, 725, 1039, 1234
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	5 cut(s)	124, 565, 1093, 1108, 1142
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	6 cut(s)	194, 315, 385, 420, 664, 1281
Hpy188III	TCNNGA	9 cut(s)	153, 174, 266, 282, 484, 521, 675, 825, 1238
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	4 cut(s)	595, 1096, 1130, 1171
HpyCH4V	TGCA	8 cut(s)	168, 325, 375, 569, 627, 715, 733, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 25, 328, 654
HpyF3I	CTNAG	7 cut(s)	293, 314, 417, 456, 462, 588, 823
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	1 cut(s)	47
KasI	GGCGCC	1 cut(s)	46
Ksp22I	TGATCA	2 cut(s)	912, 933
Kzo9I	GATC	4 cut(s)	184, 912, 933, 1014
LguI	GCTCTTC	2 cut(s)	104, 1180
LmnI	GCTCC	1 cut(s)	952
Lsp1109I	GCAGC	2 cut(s)	40, 309
MaeI	CTAG	4 cut(s)	93, 335, 675, 809
MaeIII	GTNAC	3 cut(s)	130, 481, 680
MalI	GATC	4 cut(s)	186, 914, 935, 1016
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	4 cut(s)	184, 912, 933, 1014
MfeI	CAATTG	2 cut(s)	693, 978
MhlI	GDGCHC	2 cut(s)	478, 949
MluCI	AATT	8 cut(s)	188, 658, 686, 693, 872, 978, 1167, 1250
Mly113I	GGCGCC	1 cut(s)	47
MlyI	GAGTC	3 cut(s)	170, 271, 712
MmeI	TCCRAC	1 cut(s)	1051
Mph1103I	ATGCAT	1 cut(s)	170
MseI	TTAA	5 cut(s)	306, 564, 992, 1010, 1288
MslI	CAYNNNNRTG	2 cut(s)	226, 582
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	2 cut(s)	693, 978
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	11, 25, 328, 654
NarI	GGCGCC	1 cut(s)	47
NcoI	CCATGG	2 cut(s)	368, 1191
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	4 cut(s)	184, 912, 933, 1014
NlaIV	GGNNCC	2 cut(s)	48, 948
NmuCI	GTSAC	2 cut(s)	130, 481
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	3 cut(s)	322, 858, 1225
PaeI	GCATGC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	927
PciI	ACATGT	1 cut(s)	854
PciSI	GCTCTTC	2 cut(s)	104, 1180
PfeI	GAWTC	5 cut(s)	73, 517, 725, 1039, 1234
PflMI	CCANNNNNTGG	2 cut(s)	238, 980
PkrI	GCNGC	2 cut(s)	30, 324
PleI	GAGTC	3 cut(s)	169, 270, 711
PluTI	GGCGCC	1 cut(s)	50
PpsI	GAGTC	3 cut(s)	169, 270, 711
PscI	ACATGT	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	48, 948
PspPI	GGNCC	2 cut(s)	391, 632
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	226, 582
SapI	GCTCTTC	2 cut(s)	104, 1180
SaqAI	TTAA	5 cut(s)	306, 564, 992, 1010, 1288
SatI	GCNGC	2 cut(s)	29, 323
Sau3AI	GATC	4 cut(s)	184, 912, 933, 1014
Sau96I	GGNCC	2 cut(s)	391, 632
SchI	GAGTC	3 cut(s)	170, 271, 712
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	478, 949
SfoI	GGCGCC	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	632
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	226, 582
SmlI	CTYRAG	4 cut(s)	151, 174, 967, 1216
SmoI	CTYRAG	4 cut(s)	151, 174, 967, 1216
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	8 cut(s)	188, 658, 686, 693, 872, 978, 1167, 1250
SseBI	AGGCCT	1 cut(s)	927
SsiI	CCGC	1 cut(s)	109
SspDI	GGCGCC	1 cut(s)	46
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	4 cut(s)	93, 335, 675, 809
StuI	AGGCCT	1 cut(s)	927
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	4 cut(s)	368, 434, 737, 1191
TaqI	TCGA	3 cut(s)	175, 283, 1267
TasI	AATT	8 cut(s)	188, 658, 686, 693, 872, 978, 1167, 1250
TfiI	GAWTC	5 cut(s)	73, 517, 725, 1039, 1234
Tru1I	TTAA	5 cut(s)	306, 564, 992, 1010, 1288
Tru9I	TTAA	5 cut(s)	306, 564, 992, 1010, 1288
TscAI	CASTG	1 cut(s)	1122
TseFI	GTSAC	2 cut(s)	130, 481
TseI	GCWGC	2 cut(s)	28, 322
Tsp45I	GTSAC	2 cut(s)	130, 481
TspDTI	ATGAA	4 cut(s)	882, 1074, 1197, 1272
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	1122
Van91I	CCANNNNNTGG	2 cut(s)	238, 980
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	686
XbaI	TCTAGA	1 cut(s)	674
XceI	RCATGY	3 cut(s)	322, 858, 1225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	714
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	4 cut(s)	93, 335, 675, 809
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.