pycom04g08200

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
9585597 .. 9587078
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g08200.1

Sequence Viewer

Length: 1482 bp
ATGGCTTCCCTAGCAAGGCAAAAGCAGCCTCACTTTGTCTTAATCCCTCTCATGGCACAAGGCCATATGATCCCCATGGTAGACATGGCTAGGCTTATTGCAGAGCGTGGGGTAATGGTTAGCTTGGTCACTACTCCAAACAATGCCTCGCGATTCAACACGACGATTTCCAGAGCAAGAGAATCTGGACTTCCAATTGTCCTTGTGGAAATCCCATTTCCATGCCAAGCAGTCGGACTTCCAATCGGGTGTGAGAATCTTGACAGTTTACCCTCAAGAGACCTGCTCAGAAAATTCTACAAGGCTCTAAGTTTGCTACAAGAACCGGTCGAAAACTACCTTCGCGGCCATAATCTTCACCCCAGCTGCATAATCTCGGACAAGGCCCTATCGTGGACTTCGAAAACAGCTCAGAGGTTCAATGTTCCGAGGATTGTTTTCCATGGGATGTGCTGCTTCTCACTGTTGAGCTCTCACAATGTGAAAGCCTGCAATGCTCACAATTCTGTCACCTCTGACTCTGAACCTTTTGTGGTGCCAGGGCTGCCCCAGAGGATTGAGATCACTAAGGCTCAGCTGCCCGGAACATTTGTTACCCTGCCCGATTTAGATGACTTTCGGGACAAGATACAAGAAGCAGAATTAACATCCTATGGCGTTGTAGTGAATAGCTGTGATGAACTGGAGAATGGGTGTGCTGAAGAGTTGAGCAAGGTGCTTGGAAAAAAACTTTGGTGCATTGGGCCAGTTTCCTTGTGCAACAAGAGCAATCTGGACAGGTTTTCGAGAGGCAACAAACCCTCAATTGATGAGAGGCAATGCTTGGAATGGCTCGAATCAATGAAACCAAGGTCGGTTATCTACGCGTGTCTCGGTAGCCTTTGCAGACTAGTTCCATCACAACTGGTTGAGCTTGCACTTGGTTTAGAAGCATCAGGGTGGCCATTTATTTGGGTAGTCAAAACAAGTGAGAAGTATTTAGAATTGGAGAAGTGGTTAGTGGAGGAAAGATTTGAGGAAAGGATCAAAGGGAGAGGTCTTCTGATCAAGGGTTGGGCTCCACAAATTCTTATACTCTCTAATCCTGCAATTGGAGGATTCTTAACTCATTGTGGTTGGAACTCAACGATAGAAGGGGCATGTTCCGGTGTACCAATGATTACATGGCCTCTGTTCGCCGAACAGTTCTTTAACGAAAAAATGATTGTAGAAGTTTTGAGGATCGGGGTTCGGGTTGGTGTAGAAGTCCCAGTTAGGTGGGGGGATGAAGAGAAAGTTGGGGTGTTGGTGAAGAAAGGAGGAGTGAAGAAGGCAATAGAATCGCTGATGGATGAGAGCGAAGAAGGAAAAAGGCGAAGAACGAGAGCAAGAGAAGTTGGTGAGATGAGTAGAAGGGCTATGGAAGAAGGAGGATCATCTCACGCAAACATGTCATATCTAATCCAAAATGTTATGGAAGAGTCTACCCAAGGAAAAGGTTAA

Protein Analysis

494

Amino Acids

54.95

Weight (kDa)

7.49

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 250 2.2e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 277 - 403 6.2e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 535
AccI GTMKAC 2 cut(s) 81, 1463
AccII CGCG 3 cut(s) 151, 345, 866
AciI CCGC 1 cut(s) 345
AclWI GGATC 4 cut(s) 64, 1031, 1229, 1420
AcoI YGGCCR 2 cut(s) 346, 941
AcsI RAATTY 2 cut(s) 293, 1065
AcuI CTGAAG 1 cut(s) 720
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 1 cut(s) 1152
AfiI CCNNNNNNNGG 4 cut(s) 15, 52, 393, 1091
AflIII ACRYGT 2 cut(s) 864, 1428
AgeI ACCGGT 1 cut(s) 325
AgsI TTSAA 2 cut(s) 157, 421
AhlI ACTAGT 1 cut(s) 889
AjnI CCWGG 1 cut(s) 538
AjuI GAANNNNNNNTTGG 4 cut(s) 715, 747, 1260, 1292
AluBI AGCT 7 cut(s) 123, 366, 410, 471, 577, 672, 913
AluI AGCT 7 cut(s) 123, 366, 410, 471, 577, 672, 913
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 2 cut(s) 273, 875
AlwI GGATC 4 cut(s) 64, 1031, 1229, 1420
AoxI GGCC 6 cut(s) 61, 346, 384, 743, 941, 1166
ApeKI GCWGC 5 cut(s) 25, 366, 453, 544, 577
ApoI RAATTY 2 cut(s) 293, 1065
AsiGI ACCGGT 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 385, 743
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 4 cut(s) 350, 502, 1300, 1391
AsuII TTCGAA 1 cut(s) 401
BalI TGGCCA 1 cut(s) 943
BanI GGYRCC 1 cut(s) 535
BanII GRGCYC 2 cut(s) 473, 1060
BbsI GAAGAC 1 cut(s) 1031
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 5 cut(s) 37, 353, 440, 531, 564
BccI CCATC 2 cut(s) 904, 1321
BcgI CGANNNNNNTGC 2 cut(s) 1302, 1336
BciT130I CCWGG 1 cut(s) 540
BclI TGATCA 1 cut(s) 1044
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 273, 875
BcuI ACTAGT 1 cut(s) 889
BfaI CTAG 3 cut(s) 11, 90, 890
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 6 cut(s) 26, 346, 367, 454, 545, 578
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 6 cut(s) 27, 347, 368, 455, 546, 579
Bme1390I CCNGG 2 cut(s) 540, 582
BmgT120I GGNCC 2 cut(s) 385, 743
BmiI GGNNCC 2 cut(s) 537, 1059
BmrFI CCNGG 2 cut(s) 540, 582
BmrI ACTGGG 1 cut(s) 1244
BmsI GCATC 1 cut(s) 941
BmuI ACTGGG 1 cut(s) 1244
BpiI GAAGAC 1 cut(s) 1031
BplI GAGNNNNNCTC 2 cut(s) 270, 302
BpmI CTGGAG 1 cut(s) 704
Bpu1102I GCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 582
BsaBI GATNNNNATC 1 cut(s) 560
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 6 cut(s) 75, 428, 442, 539, 848, 1468
BsaWI WCCGGW 2 cut(s) 325, 1145
BsaXI ACNNNNNCTCC 4 cut(s) 677, 707, 980, 1010
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 52, 393, 1091
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 4 cut(s) 687, 746, 909, 1250
Bse3DI GCAATG 2 cut(s) 499, 824
Bse8I GATNNNNATC 1 cut(s) 560
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 6 cut(s) 75, 428, 442, 539, 848, 1468
BseGI GGATG 4 cut(s) 453, 647, 1270, 1336
BseJI GATNNNNATC 1 cut(s) 560
BseLI CCNNNNNNNGG 4 cut(s) 15, 52, 393, 1091
BseMI GCAATG 2 cut(s) 499, 824
BseMII CTCAG 3 cut(s) 301, 425, 587
BseNI ACTGG 4 cut(s) 687, 746, 909, 1250
BseRI GAGGAG 1 cut(s) 1314
BseXI GCAGC 5 cut(s) 37, 353, 440, 531, 564
BseYI CCCAGC 1 cut(s) 362
Bsh1236I CGCG 3 cut(s) 151, 345, 866
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 6 cut(s) 63, 348, 386, 745, 943, 1168
BshNI GGYRCC 1 cut(s) 535
BshTI ACCGGT 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 3 cut(s) 326, 582, 1146
BslFI GGGAC 2 cut(s) 635, 1232
BslI CCNNNNNNNGG 4 cut(s) 15, 52, 393, 1091
BsmAI GTCTC 2 cut(s) 273, 875
BsmFI GGGAC 2 cut(s) 635, 1232
BsnI GGCC 6 cut(s) 63, 348, 386, 745, 943, 1168
Bso31I GGTCTC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 473, 1060
Bsp143I GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
Bsp1720I GCTNAGC 1 cut(s) 573
Bsp19I CCATGG 2 cut(s) 75, 442
Bsp68I TCGCGA 1 cut(s) 151
BspACI CCGC 1 cut(s) 345
BspANI GGCC 6 cut(s) 63, 348, 386, 745, 943, 1168
BspCNI CTCAG 3 cut(s) 300, 424, 586
BspFNI CGCG 3 cut(s) 151, 345, 866
BspLI GGNNCC 2 cut(s) 537, 1059
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 4 cut(s) 64, 1031, 1229, 1420
BspT104I TTCGAA 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 2 cut(s) 499, 824
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 4 cut(s) 687, 746, 909, 1250
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 6 cut(s) 75, 428, 442, 539, 848, 1468
BssMI GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
BssT1I CCWWGG 4 cut(s) 75, 442, 848, 1468
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 3 cut(s) 266, 465, 1185
Bst6I CTCTTC 3 cut(s) 696, 1263, 1452
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 490, 915
BstDEI CTNAG 5 cut(s) 287, 308, 411, 567, 573
BstDSI CCRYGG 2 cut(s) 75, 442
BstF5I GGATG 4 cut(s) 453, 647, 1270, 1336
BstFNI CGCG 3 cut(s) 151, 345, 866
BstKTI GATC 6 cut(s) 72, 564, 1026, 1047, 1224, 1415
BstMAI GTCTC 2 cut(s) 273, 875
BstMBI GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 5 cut(s) 11, 25, 494, 544, 765
BstNI CCWGG 1 cut(s) 540
BstNSI RCATGY 2 cut(s) 1143, 1432
BstSCI CCNGG 2 cut(s) 538, 580
BstUI CGCG 3 cut(s) 151, 345, 866
BstV1I GCAGC 5 cut(s) 37, 353, 440, 531, 564
BstV2I GAAGAC 1 cut(s) 1031
BstXI CCANNNNNNTGG 2 cut(s) 951, 1257
BsuRI GGCC 6 cut(s) 63, 348, 386, 745, 943, 1168
BtgI CCRYGG 2 cut(s) 75, 442
BtsCI GGATG 4 cut(s) 453, 647, 1270, 1336
BtsIMutI CAGTG 1 cut(s) 461
BtuMI TCGCGA 1 cut(s) 151
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 490, 915
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 385, 743
Csp6I GTAC 1 cut(s) 1151
CspAI ACCGGT 1 cut(s) 325
CviAII CATG 8 cut(s) 52, 76, 85, 222, 443, 1140, 1164, 1429
CviQI GTAC 1 cut(s) 1151
DdeI CTNAG 5 cut(s) 287, 308, 411, 567, 573
DpnI GATC 6 cut(s) 71, 563, 1025, 1046, 1223, 1414
DpnII GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
DraIII CACNNNGTG 1 cut(s) 481
EaeI YGGCCR 2 cut(s) 346, 941
Eam1104I CTCTTC 3 cut(s) 696, 1263, 1452
EarI CTCTTC 3 cut(s) 696, 1263, 1452
Ecl136II GAGCTC 1 cut(s) 471
Eco130I CCWWGG 4 cut(s) 75, 442, 848, 1468
Eco24I GRGCYC 2 cut(s) 473, 1060
Eco31I GGTCTC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 538
EcoT14I CCWWGG 4 cut(s) 75, 442, 848, 1468
EcoT38I GRGCYC 2 cut(s) 473, 1060
ErhI CCWWGG 4 cut(s) 75, 442, 848, 1468
FaeI CATG 8 cut(s) 55, 79, 88, 225, 446, 1143, 1167, 1432
FaqI GGGAC 2 cut(s) 635, 1232
FatI CATG 8 cut(s) 51, 75, 84, 221, 442, 1139, 1163, 1428
FauNDI CATATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 1044
FblI GTMKAC 2 cut(s) 81, 1463
Fnu4HI GCNGC 6 cut(s) 26, 346, 367, 454, 545, 578
FokI GGATG 4 cut(s) 460, 634, 1277, 1343
FriOI GRGCYC 2 cut(s) 473, 1060
Fsp4HI GCNGC 6 cut(s) 26, 346, 367, 454, 545, 578
FspBI CTAG 3 cut(s) 11, 90, 890
GluI GCNGC 6 cut(s) 26, 346, 367, 454, 545, 578
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 704
HaeIII GGCC 6 cut(s) 63, 348, 386, 745, 943, 1168
HapII CCGG 3 cut(s) 326, 582, 1146
Hin1II CATG 8 cut(s) 55, 79, 88, 225, 446, 1143, 1167, 1432
HinfI GANTC 8 cut(s) 153, 182, 256, 518, 836, 1098, 1319, 1460
HpaII CCGG 3 cut(s) 326, 582, 1146
HphI GGTGA 4 cut(s) 350, 502, 1300, 1391
Hpy166II GTNNAC 5 cut(s) 82, 269, 396, 1151, 1464
Hpy188I TCNGA 8 cut(s) 236, 290, 379, 414, 429, 517, 523, 1044
Hpy188III TCNNGA 8 cut(s) 150, 171, 186, 260, 276, 620, 773, 786
Hpy8I GTNNAC 5 cut(s) 82, 269, 396, 1151, 1464
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 6 cut(s) 350, 1127, 1303, 1337, 1386, 1400
HpyCH4III ACNGT 3 cut(s) 266, 465, 1185
HpyCH4V TGCA 8 cut(s) 101, 369, 492, 738, 759, 885, 917, 1088
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 25, 494, 544, 765
HpyF3I CTNAG 5 cut(s) 287, 308, 411, 567, 573
Hsp92II CATG 8 cut(s) 55, 79, 88, 225, 446, 1143, 1167, 1432
Ksp22I TGATCA 1 cut(s) 1044
Kzo9I GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
LmnI GCTCC 1 cut(s) 1063
Lsp1109I GCAGC 5 cut(s) 37, 353, 440, 531, 564
LweI GCATC 1 cut(s) 941
MaeI CTAG 3 cut(s) 11, 90, 890
MaeIII GTNAC 3 cut(s) 127, 508, 592
MalI GATC 6 cut(s) 71, 563, 1025, 1046, 1223, 1414
MboI GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
MfeI CAATTG 3 cut(s) 195, 804, 1089
MhlI GDGCHC 2 cut(s) 473, 1060
MlsI TGGCCA 1 cut(s) 943
MluCI AATT 8 cut(s) 195, 293, 502, 641, 804, 983, 1065, 1089
MluI ACGCGT 1 cut(s) 864
MluNI TGGCCA 1 cut(s) 943
MlyI GAGTC 2 cut(s) 512, 1469
MmeI TCCRAC 2 cut(s) 214, 1097
Mox20I TGGCCA 1 cut(s) 943
MscI TGGCCA 1 cut(s) 943
MseI TTAA 5 cut(s) 41, 644, 1103, 1191, 1480
MslI CAYNNNNRTG 2 cut(s) 220, 937
Msp20I TGGCCA 1 cut(s) 943
MspA1I CMGCKG 2 cut(s) 366, 577
MspI CCGG 3 cut(s) 326, 582, 1146
MspR9I CCNGG 2 cut(s) 540, 582
MunI CAATTG 3 cut(s) 195, 804, 1089
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 3 cut(s) 151, 345, 866
MwoI GCNNNNNNNGC 5 cut(s) 11, 25, 494, 544, 765
NciI CCSGG 1 cut(s) 582
NcoI CCATGG 2 cut(s) 75, 442
NdeI CATATG 1 cut(s) 66
NdeII GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
NlaIII CATG 8 cut(s) 55, 79, 88, 225, 446, 1143, 1167, 1432
NlaIV GGNNCC 2 cut(s) 537, 1059
NmuCI GTSAC 2 cut(s) 127, 508
NruI TCGCGA 1 cut(s) 151
NspI RCATGY 2 cut(s) 1143, 1432
NspV TTCGAA 1 cut(s) 401
PciI ACATGT 1 cut(s) 1428
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PfeI GAWTC 6 cut(s) 153, 182, 256, 836, 1098, 1319
PinAI ACCGGT 1 cut(s) 325
PkrI GCNGC 6 cut(s) 27, 347, 368, 455, 546, 579
PleI GAGTC 2 cut(s) 512, 1468
PpsI GAGTC 2 cut(s) 512, 1468
PscI ACATGT 1 cut(s) 1428
Psp124BI GAGCTC 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 2 cut(s) 537, 1059
PspPI GGNCC 2 cut(s) 385, 743
PsrI GAACNNNNNNTAC 2 cut(s) 577, 609
PvuII CAGCTG 2 cut(s) 366, 577
RruI TCGCGA 1 cut(s) 151
RsaI GTAC 1 cut(s) 1152
RsaNI GTAC 1 cut(s) 1151
RseI CAYNNNNRTG 2 cut(s) 220, 937
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 5 cut(s) 41, 644, 1103, 1191, 1480
SatI GCNGC 6 cut(s) 26, 346, 367, 454, 545, 578
Sau3AI GATC 6 cut(s) 69, 561, 1023, 1044, 1221, 1412
Sau96I GGNCC 2 cut(s) 385, 743
SchI GAGTC 2 cut(s) 512, 1469
ScrFI CCNGG 2 cut(s) 540, 582
SduI GDGCHC 2 cut(s) 473, 1060
SfaNI GCATC 1 cut(s) 941
SfuI TTCGAA 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 220, 937
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SpeI ACTAGT 1 cut(s) 889
Sse9I AATT 8 cut(s) 195, 293, 502, 641, 804, 983, 1065, 1089
SsiI CCGC 1 cut(s) 345
SspMI CTAG 3 cut(s) 11, 90, 890
SstI GAGCTC 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 538, 580
StyI CCWWGG 4 cut(s) 75, 442, 848, 1468
TaaI ACNGT 3 cut(s) 266, 465, 1185
TaqI TCGA 4 cut(s) 330, 401, 785, 834
TasI AATT 8 cut(s) 195, 293, 502, 641, 804, 983, 1065, 1089
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 6 cut(s) 153, 182, 256, 836, 1098, 1319
Tru1I TTAA 5 cut(s) 41, 644, 1103, 1191, 1480
Tru9I TTAA 5 cut(s) 41, 644, 1103, 1191, 1480
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 127, 508
TseI GCWGC 5 cut(s) 25, 366, 453, 544, 577
Tsp45I GTSAC 2 cut(s) 127, 508
TspDTI ATGAA 3 cut(s) 693, 857, 1281
TspRI CASTG 1 cut(s) 468
XapI RAATTY 2 cut(s) 293, 1065
XceI RCATGY 2 cut(s) 1143, 1432
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 1161
XmiI GTMKAC 2 cut(s) 81, 1463
XspI CTAG 3 cut(s) 11, 90, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.