Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Forward (+)

15865520 .. 15871445

Gene Structure 5926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG180500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGGAGTGAGAGTCTTGACACCTTACCATCTCGAAATCTGCTGAGGAAGTTCTTTAAGGCTCTGAGCATGCTGCAAGAACCACTAGAAAAGTACCTTGAAGACCAGAAGCTTCAGCCATGGTGCATAATCTCGGACAAGGCCCTCTCGTGGACTTCAAAAACAGCTCAGAAGTTCAATATTCCAAGGATTGTTTTCCATGGAATGTGCTGCTTCTCACTTCTGAGCTCTCACAATATCAAACTCTATAATGCACACAATTCTGTTACTTCTGATTCTGAACCTTTTGTGGTGCCAGGGCTGCCCCAGAGGATTGAGATCACTAAGGCTCAGCTACCAGGAGCATTTGTCACGCAACCGGATTTGGATGACTTCCGGGACAAGAATCAAGAGGCTGAAGCGAAATCGTTTGGGGTGCATCTACTCGGCCAACCTTTTGCTATTCACAGTGGTGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

6.96

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	427
AcuI	CTGAAG	2 cut(s)	98, 417
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	101, 159, 178
AjnI	CCWGG	2 cut(s)	295, 337
AleI	CACNNNNGTG	1 cut(s)	450
AluBI	AGCT	4 cut(s)	112, 167, 228, 334
AluI	AGCT	4 cut(s)	112, 167, 228, 334
Alw21I	GWGCWC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	141, 427
ApeKI	GCWGC	3 cut(s)	73, 210, 301
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	60, 197, 288
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	297, 339
BcnI	CCSGG	1 cut(s)	377
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	74, 211, 302
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	3 cut(s)	75, 212, 303
Bme1390I	CCNGG	3 cut(s)	297, 339, 377
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	297, 339, 377
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	4 cut(s)	119, 185, 199, 296
BsaWI	WCCGGW	1 cut(s)	358
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	297, 339
BseDI	CCNNGG	4 cut(s)	119, 185, 199, 296
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	5 cut(s)	35, 56, 182, 215, 344
BseXI	GCAGC	3 cut(s)	60, 197, 288
BshFI	GGCC	2 cut(s)	143, 429
BshNI	GGYRCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	359, 376
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	143, 429
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	330
Bsp19I	CCATGG	2 cut(s)	119, 199
BspANI	GGCC	2 cut(s)	143, 429
BspCNI	CTCAG	5 cut(s)	36, 57, 181, 216, 343
BspLI	GGNNCC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	119, 185, 199, 296
BssMI	GATC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	3 cut(s)	119, 185, 199
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	297, 339
Bst4CI	ACNGT	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	6 cut(s)	44, 65, 168, 224, 324, 330
BstDSI	CCRYGG	2 cut(s)	119, 199
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	297, 339
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	295, 337, 375
BstV1I	GCAGC	3 cut(s)	60, 197, 288
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	143, 429
BtgI	CCRYGG	2 cut(s)	119, 199
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	70, 120, 200
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	6 cut(s)	44, 65, 168, 224, 324, 330
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	427
Ecl136II	GAGCTC	1 cut(s)	228
Eco130I	CCWWGG	3 cut(s)	119, 185, 199
Eco24I	GRGCYC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	98, 417
EcoICRI	GAGCTC	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	295, 337
EcoT14I	CCWWGG	3 cut(s)	119, 185, 199
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	3 cut(s)	119, 185, 199
FaeI	CATG	3 cut(s)	73, 123, 203
FaiI	YATR	5 cut(s)	71, 121, 128, 201, 249
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	69, 119, 199
Fnu4HI	GCNGC	3 cut(s)	74, 211, 302
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	74, 211, 302
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	74, 211, 302
HaeIII	GGCC	2 cut(s)	143, 429
HapII	CCGG	2 cut(s)	359, 376
Hin1II	CATG	3 cut(s)	73, 123, 203
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	13, 275, 385
HpaII	CCGG	2 cut(s)	359, 376
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	6 cut(s)	66, 136, 171, 225, 274, 280
Hpy188III	TCNNGA	3 cut(s)	17, 33, 389
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	4 cut(s)	76, 126, 254, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	6 cut(s)	44, 65, 168, 224, 324, 330
Hsp92II	CATG	3 cut(s)	73, 123, 203
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	8 cut(s)	119, 282, 309, 320, 324, 351, 372, 389
Lsp1109I	GCAGC	3 cut(s)	60, 197, 288
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	265, 349
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	4 cut(s)	39, 155, 303, 385
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	2 cut(s)	359, 376
MspR9I	CCNGG	3 cut(s)	297, 339, 377
MvaI	CCWGG	2 cut(s)	297, 339
MwoI	GCNNNNNNNGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	377
NcoI	CCATGG	2 cut(s)	119, 199
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	3 cut(s)	73, 123, 203
NlaIV	GGNNCC	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	450
PaeI	GCATGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	275, 385
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	75, 212, 303
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	295, 337
PspGI	CCWGG	2 cut(s)	295, 337
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	450
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	74, 211, 302
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	3 cut(s)	297, 339, 377
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	8 cut(s)	26, 99, 114, 169, 230, 286, 336, 436
SfaNI	GCATC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	450
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	259
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	295, 337, 375
StyI	CCWWGG	3 cut(s)	119, 185, 199
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	275, 385
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	73, 210, 301
Tsp45I	GTSAC	1 cut(s)	349
TspRI	CASTG	1 cut(s)	454
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.