Rw3G015530

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006972
Physical Location & Seq
Forward (+)
16040508 .. 16060254
19747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015530.1

Sequence Viewer

Length: 1491 bp
ATGGCTTCAGAATCCCATGATCAACTTCACTTTGTTTTAATACCTCTAATGTCTCCAGGGCACCTCATACCAATGGCAGACATGGCTAAGCTATTGGCACTACATGGTGTGGTGGTCACAATTGTAACCACACCCCTTAATGCCATTCGAATCAAACCAATCATAGATCGTGCGATTGATTCTGGTCTCCCTATTCATATGGTGCAGTTCAGTTTGCCACTCCATGAGTTTGGTTTGCCAGAGGGATGTGAAAACTTGGATTCAGTTCCCTCAAGAAACTTGTTTCTGAATTTCTTTGATGCAGTTAGCAAGCTGCAGCAGTCAGTAGAACAATTGCTTGAAACAATAAAACCCATTCCAAGCTGCATAATTTCAGATAGAGGTCTTTCATGGGCGGCTGAGATTGCTCAGAAGTTTGGGTTACCAAGGCTTTTGTTTGATGGGACTAATTGCTTTACTCTTTTCTCTCACAATATCAAACTCTATAATGCACACAATTCTGTTACTTCTGATTCTGAACCTTTTGTGGTGCCAGGGCTGCCCCAGAGGATTGAGATCACTAAGGCTCAGCTACCAGGAGCATTTGTCACGCAACCGGATTTGGATGACTTCCGGGACAAGAATCAAGAGGCTGAAGCGAAATCGTTTGGGGTGGTGGTGAATAGCTTTAATGCACTTGAACATGGGTGTGCTGAGGAGTTGGAGAAGGTGTTTGATAAAAAGGTTTGGTGCATTGGACCAGTTTCCTTATGCTACAAGAGCAATTCAGAAAAGTTTTCTAGAGGTAACAAATCCTCAATTGATGAGAGTCAATGCTTGCAATGGCTTGAATCAATGCAACCAAGGTCTGTCATCTACGTTTGTCTTGGTAGCCTTTGTAGATTAGTCTCATCACAACTGATAGAGCTTGGACTAGGCTTAGAAGCCTCAGGAAAACCCTTTATCTGGGTAATCAAAACATGTGGGAAGTATGAAGAATTGGAGAAGTGGTTCGTGGAGGAGAGGTTTGAGGAAAGGATCAAAGGAAGAGGCCTTTTGATCAAGGGTTGGGCTCCCCAAGTTCTTATTCTCTCAAATCCAGCAATTGGAGGGTTCTTAACTCATTGTGGTTGGAACTCAAGCATAGAAGGGGCATGTTCTGGTGTGCCAATGATCACATGGCCTCTATTCGCTGAGCAATTCCTTAACGAAAAATTGATCATAGAGGTTTTAAAGATCGGTGTTCGGGTTGGTGTGGAGATTCCTGTTAGATGGGGGGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGGGGTGAAGAAGGCAATACAAACACTAATGGATGGAGGTGAAGAAGGAGAAAAAAGAAGAAAGAGAGCAACAGAAATTGGAGAGAAGGGAAGAAGAGCCATGGAACAAGGAGGTTCATCGCACTCAAGCATGTCTTCTTTGATTCAAGATGCTAGGCAATTACATGAAGCCACTCGAAACAAAGGTCAGAAACTTTAA

Protein Analysis

496

Amino Acids

55.07

Weight (kDa)

6.22

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 399 1.5e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 60, 529
AccB7I CCANNNNNTGG 1 cut(s) 1085
AciI CCGC 1 cut(s) 395
AclWI GGATC 1 cut(s) 1025
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 654
AfiI CCNNNNNNNGG 2 cut(s) 945, 1085
AflIII ACRYGT 1 cut(s) 959
AgsI TTSAA 4 cut(s) 341, 680, 830, 1439
AjnI CCWGG 3 cut(s) 55, 532, 574
AjuI GAANNNNNNNTTGG 4 cut(s) 1050, 1082, 1254, 1286
AloI GAACNNNNNNTCC 2 cut(s) 974, 1006
AluBI AGCT 6 cut(s) 91, 313, 363, 571, 666, 907
AluI AGCT 6 cut(s) 91, 313, 363, 571, 666, 907
Alw26I GTCTC 3 cut(s) 57, 191, 892
AlwI GGATC 1 cut(s) 1025
AoxI GGCC 2 cut(s) 1030, 1160
ApeKI GCWGC 4 cut(s) 313, 316, 363, 538
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 1 cut(s) 1462
Asp700I GAANNNNTTC 1 cut(s) 989
AspS9I GGNCC 1 cut(s) 737
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 4 cut(s) 670, 1294, 1309, 1343
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 737
AxyI CCTNAGG 1 cut(s) 928
BaeGI GKGCMC 1 cut(s) 63
BanI GGYRCC 2 cut(s) 60, 529
BanII GRGCYC 1 cut(s) 1054
BbsI GAAGAC 1 cut(s) 1419
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 4 cut(s) 300, 328, 350, 525
BccI CCATC 4 cut(s) 434, 1245, 1286, 1319
BciT130I CCWGG 3 cut(s) 57, 534, 576
BclI TGATCA 4 cut(s) 19, 1038, 1152, 1197
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 3 cut(s) 57, 191, 892
BfaI CTAG 3 cut(s) 780, 914, 1446
BfmI CTRYAG 1 cut(s) 314
BisI GCNGC 5 cut(s) 314, 317, 364, 396, 539
BlpI GCTNAGC 3 cut(s) 87, 567, 1173
BlsI GCNGC 5 cut(s) 315, 318, 365, 397, 540
Bme1390I CCNGG 4 cut(s) 57, 534, 576, 614
Bme18I GGWCC 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 3 cut(s) 62, 531, 1053
BmrFI CCNGG 4 cut(s) 57, 534, 576, 614
BmsI GCATC 2 cut(s) 289, 1432
BpiI GAAGAC 1 cut(s) 1419
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 693
Bpu1102I GCTNAGC 3 cut(s) 87, 567, 1173
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 3 cut(s) 256, 1102, 1402
BpuMI CCSGG 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 5 cut(s) 56, 425, 533, 842, 1392
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 2 cut(s) 945, 1085
Bse1I ACTGG 1 cut(s) 740
Bse21I CCTNAGG 1 cut(s) 928
Bse3DI GCAATG 1 cut(s) 827
Bse8I GATNNNNATC 1 cut(s) 554
BseBI CCWGG 3 cut(s) 57, 534, 576
BseDI CCNNGG 5 cut(s) 56, 425, 533, 842, 1392
BseGI GGATG 4 cut(s) 251, 610, 1264, 1330
BseJI GATNNNNATC 1 cut(s) 554
BseLI CCNNNNNNNGG 2 cut(s) 945, 1085
BseMI GCAATG 1 cut(s) 827
BseMII CTCAG 6 cut(s) 390, 422, 581, 684, 942, 1164
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 2 cut(s) 710, 1013
BseSI GKGCMC 1 cut(s) 63
BseXI GCAGC 4 cut(s) 300, 328, 350, 525
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 2 cut(s) 1032, 1162
BshNI GGYRCC 2 cut(s) 60, 529
BsiSI CCGG 2 cut(s) 596, 613
BslFI GGGAC 2 cut(s) 457, 629
BslI CCNNNNNNNGG 2 cut(s) 945, 1085
BsmAI GTCTC 3 cut(s) 57, 191, 892
BsmFI GGGAC 2 cut(s) 457, 629
BsnI GGCC 2 cut(s) 1032, 1162
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 63, 1054
Bsp143I GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
Bsp1720I GCTNAGC 3 cut(s) 87, 567, 1173
Bsp19I CCATGG 1 cut(s) 1392
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 1032, 1162
BspCNI CTCAG 6 cut(s) 391, 421, 580, 685, 941, 1165
BspLI GGNNCC 3 cut(s) 62, 531, 1053
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 1 cut(s) 1025
BspQI GCTCTTC 1 cut(s) 1381
BspT104I TTCGAA 1 cut(s) 148
BspT107I GGYRCC 2 cut(s) 60, 529
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 827
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 5 cut(s) 56, 425, 533, 842, 1392
BssMI GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
BssT1I CCWWGG 3 cut(s) 425, 842, 1392
Bst2UI CCWGG 3 cut(s) 57, 534, 576
Bst6I CTCTTC 3 cut(s) 1021, 1257, 1381
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 311, 818
BstDEI CTNAG 9 cut(s) 87, 399, 408, 561, 567, 693, 919, 928, 1173
BstDSI CCRYGG 1 cut(s) 1392
BstEII GGTNACC 1 cut(s) 420
BstF5I GGATG 4 cut(s) 251, 610, 1264, 1330
BstKTI GATC 8 cut(s) 22, 169, 558, 1020, 1041, 1155, 1200, 1218
BstMAI GTCTC 3 cut(s) 57, 191, 892
BstMBI GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
BstMWI GCNNNNNNNGC 4 cut(s) 83, 404, 538, 759
BstNI CCWGG 3 cut(s) 57, 534, 576
BstNSI RCATGY 3 cut(s) 963, 1137, 1426
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 4 cut(s) 55, 532, 574, 612
BstSFI CTRYAG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 63
BstV1I GCAGC 4 cut(s) 300, 328, 350, 525
BstV2I GAAGAC 1 cut(s) 1419
BstXI CCANNNNNNTGG 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 928
BsuRI GGCC 2 cut(s) 1032, 1162
BtgI CCRYGG 1 cut(s) 1392
BtgZI GCGATG 1 cut(s) 1395
BtsCI GGATG 4 cut(s) 251, 610, 1264, 1330
Cac8I GCNNGC 2 cut(s) 311, 818
Cfr13I GGNCC 1 cut(s) 737
CspCI CAANNNNNGTGG 2 cut(s) 943, 978
DdeI CTNAG 9 cut(s) 87, 399, 408, 561, 567, 693, 919, 928, 1173
DpnI GATC 8 cut(s) 21, 168, 557, 1019, 1040, 1154, 1199, 1217
DpnII GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
DraI TTTAAA 1 cut(s) 1212
Eam1104I CTCTTC 3 cut(s) 1021, 1257, 1381
EarI CTCTTC 3 cut(s) 1021, 1257, 1381
Eco130I CCWWGG 3 cut(s) 425, 842, 1392
Eco147I AGGCCT 1 cut(s) 1032
Eco24I GRGCYC 1 cut(s) 1054
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 737
Eco57I CTGAAG 1 cut(s) 654
Eco81I CCTNAGG 1 cut(s) 928
Eco91I GGTNACC 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 55, 532, 574
EcoT14I CCWWGG 3 cut(s) 425, 842, 1392
EcoT38I GRGCYC 1 cut(s) 1054
ErhI CCWWGG 3 cut(s) 425, 842, 1392
FalI AAGNNNNNCTT 2 cut(s) 1411, 1443
FaqI GGGAC 2 cut(s) 457, 629
FauNDI CATATG 1 cut(s) 198
FbaI TGATCA 4 cut(s) 19, 1038, 1152, 1197
Fnu4HI GCNGC 5 cut(s) 314, 317, 364, 396, 539
FokI GGATG 4 cut(s) 258, 617, 1271, 1337
FriOI GRGCYC 1 cut(s) 1054
Fsp4HI GCNGC 5 cut(s) 314, 317, 364, 396, 539
FspBI CTAG 3 cut(s) 780, 914, 1446
GluI GCNGC 5 cut(s) 314, 317, 364, 396, 539
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 1032, 1162
HapII CCGG 2 cut(s) 596, 613
HpaII CCGG 2 cut(s) 596, 613
HphI GGTGA 4 cut(s) 670, 1294, 1309, 1343
Hpy188I TCNGA 8 cut(s) 10, 288, 376, 411, 511, 517, 769, 1482
Hpy188III TCNNGA 5 cut(s) 273, 626, 780, 930, 1439
HpyAV CCTTC 5 cut(s) 700, 1121, 1297, 1331, 1372
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 9 cut(s) 205, 302, 316, 366, 491, 674, 732, 820, 838
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 404, 538, 759
HpyF3I CTNAG 9 cut(s) 87, 399, 408, 561, 567, 693, 919, 928, 1173
HpySE526I ACGT 1 cut(s) 858
Ksp22I TGATCA 4 cut(s) 19, 1038, 1152, 1197
Kzo9I GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
LguI GCTCTTC 1 cut(s) 1381
LmnI GCTCC 2 cut(s) 578, 1057
Lsp1109I GCAGC 4 cut(s) 300, 328, 350, 525
LweI GCATC 2 cut(s) 289, 1432
MaeI CTAG 3 cut(s) 780, 914, 1446
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 6 cut(s) 115, 124, 420, 502, 586, 785
MalI GATC 8 cut(s) 21, 168, 557, 1019, 1040, 1154, 1199, 1217
MboI GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
MfeI CAATTG 4 cut(s) 120, 332, 798, 1083
MhlI GDGCHC 2 cut(s) 63, 1054
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 3 cut(s) 681, 1091, 1252
MroXI GAANNNNTTC 1 cut(s) 989
MseI TTAA 7 cut(s) 38, 138, 669, 1097, 1185, 1211, 1489
MslI CAYNNNNRTG 2 cut(s) 71, 687
MspI CCGG 2 cut(s) 596, 613
MspR9I CCNGG 4 cut(s) 57, 534, 576, 614
MunI CAATTG 4 cut(s) 120, 332, 798, 1083
MvaI CCWGG 3 cut(s) 57, 534, 576
MwoI GCNNNNNNNGC 4 cut(s) 83, 404, 538, 759
NciI CCSGG 1 cut(s) 614
NcoI CCATGG 1 cut(s) 1392
NdeI CATATG 1 cut(s) 198
NdeII GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
NlaIV GGNNCC 3 cut(s) 62, 531, 1053
NmuCI GTSAC 2 cut(s) 115, 586
NspI RCATGY 3 cut(s) 963, 1137, 1426
NspV TTCGAA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 1032
PciI ACATGT 1 cut(s) 959
PciSI GCTCTTC 1 cut(s) 1381
PdmI GAANNNNTTC 1 cut(s) 989
PfeI GAWTC 9 cut(s) 11, 150, 179, 260, 512, 622, 830, 1240, 1435
PflMI CCANNNNNTGG 1 cut(s) 1085
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 5 cut(s) 315, 318, 365, 397, 540
PleI GAGTC 1 cut(s) 816
PpsI GAGTC 1 cut(s) 816
PscI ACATGT 1 cut(s) 959
Psp6I CCWGG 3 cut(s) 55, 532, 574
PspEI GGTNACC 1 cut(s) 420
PspGI CCWGG 3 cut(s) 55, 532, 574
PspN4I GGNNCC 3 cut(s) 62, 531, 1053
PspPI GGNCC 1 cut(s) 737
PstI CTGCAG 1 cut(s) 318
RseI CAYNNNNRTG 2 cut(s) 71, 687
SapI GCTCTTC 1 cut(s) 1381
SaqAI TTAA 7 cut(s) 38, 138, 669, 1097, 1185, 1211, 1489
SatI GCNGC 5 cut(s) 314, 317, 364, 396, 539
Sau3AI GATC 8 cut(s) 19, 166, 555, 1017, 1038, 1152, 1197, 1215
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 4 cut(s) 57, 534, 576, 614
SduI GDGCHC 2 cut(s) 63, 1054
SfaNI GCATC 2 cut(s) 289, 1432
SfcI CTRYAG 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 737
SmiMI CAYNNNNRTG 2 cut(s) 71, 687
SmlI CTYRAG 3 cut(s) 271, 1117, 1417
SmoI CTYRAG 3 cut(s) 271, 1117, 1417
SseBI AGGCCT 1 cut(s) 1032
SsiI CCGC 1 cut(s) 395
SspMI CTAG 3 cut(s) 780, 914, 1446
StuI AGGCCT 1 cut(s) 1032
StyD4I CCNGG 4 cut(s) 55, 532, 574, 612
StyI CCWWGG 3 cut(s) 425, 842, 1392
TaiI ACGT 1 cut(s) 861
TaqI TCGA 2 cut(s) 148, 1468
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 9 cut(s) 11, 150, 179, 260, 512, 622, 830, 1240, 1435
Tru1I TTAA 7 cut(s) 38, 138, 669, 1097, 1185, 1211, 1489
Tru9I TTAA 7 cut(s) 38, 138, 669, 1097, 1185, 1211, 1489
TseFI GTSAC 2 cut(s) 115, 586
TseI GCWGC 4 cut(s) 313, 316, 363, 538
Tsp45I GTSAC 2 cut(s) 115, 586
TspDTI ATGAA 6 cut(s) 185, 378, 987, 1275, 1398, 1473
Van91I CCANNNNNTGG 1 cut(s) 1085
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 1 cut(s) 289
XbaI TCTAGA 1 cut(s) 779
XceI RCATGY 3 cut(s) 963, 1137, 1426
XcmI CCANNNNNNNNNTGG 1 cut(s) 1155
XmnI GAANNNNTTC 1 cut(s) 989
XspI CTAG 3 cut(s) 780, 914, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.