Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006972

Physical Location & Seq

Genomic Coordinates Reverse (-)

33808164 .. 33809612

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCACAAGGGCATATGATTCCCATGATAGACATGGCTAGGCTCTTCGCAGAGCGGGGTGTCATGGTTAGCTTGGTCACCACTCCATACAATGCCTCAAGATTTGAGTCATGCATTTCTCGATCAAGAGATCAATCCGGACTTCCAATACCCATTGTGAAAATCCCATTTCCGTGCCAAGAATTCTTTAAGGCTGTGAGCATGCTGCAAGAGCCACTAGAAAAGTACCTTGAAGACCAGAAGCTTCAGCCATGGTGCATAATCTCGGACAAGGCCCTCTTGTGGACTTCAAAAACAGCTCAGAAGTTCAATATTCCAAGGATTGTTTTCCATGGAATGTGCTGCTTCTCACTGCTAAGCTCTCACAACATCAAACTCTATAATGCTCACAATTCTGTTACTTATGATTTTGAACCTTTTGTGGTGCCAGGGCTGCCCCAGAGGATTGAGATTACTAAGGCTCAGCTACCAGGACCACTTGTCACGCAACCGGATTTGGATGACTTCAGGGACAAGAATCAAGAGGCTGAAGCGAAATCGTTTGGGGTGGTGGTGAATAGCTTTAATGCACTTGAACATGGGTGTGCTGAGGAGTTTGAGAAGGTATTTGATAAAAAGGTTTGGTGCATTGGACAAGTTTCCTTATGCTACAAGAGCAATTCAGATAGGTTTTCTAGAGGTAACAAATTCTCAATTGATGAGAGTCAATGCTTGCAATGGCTTGAATCAATGCAACCAAGATCTGTCAGCTATGTTTGTCTTGGTAGCCTTTGTAGATTAGTAATCAAAACATGTGGGAAGTATGAAGAATTGGAGAAGTGGTTAGTGGAGGAGAGGTTTGAGGAAAGGATCAAAGGAAGAGGCCTTTTGATCAAGGGTTGGGCTCCCCAAGTTCTTATTCTCTCAAGTCCAGCAATTAGAGGGTTCTTAACTCATTGTGGTTGGAACTCAAGCATAGAAGGGGCATGTTCTGGTGTGCCAATGATCACATGGCCTCTATTCGCTGAGCAATTTCTTAACGAAAAATTGATCGTAGAGGTTTTAAAGATCGGTGTTCGGGTTGGTGTGGAGATTCCTGTTAGATGGAGGGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGGCGTGAAGAAGGCAATACAAACACTGATGGATGGAGGTGAAGAAGGAGAAAAGAGAAGAAAGAGAGCAACAGAAATTGGAGAGAAGGGAAGAAGAGCTATGGAAAAAGGAGGTTCATCGCACTCAAGCATGTCTTCTTTGATTCAAGATGTTAGGCAATTACATGAAGCCACTCGAAACAAAGGTCAGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

440

Amino Acids

49.86

Weight (kDa)

8.65

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	290 - 345	3.5e-14	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53150
fragaria_vesca	FvH4_6g17080
malus_domestica	MD00G1055100.v1.1 MD12G1104200.v1.1
prunus_persica	Prupe.7G124000_v2.0.a1
pyrus_communis	pycom04g08200
rosa_chinensis	RchiOBHm_Chr3g0471131 RchiOBHm_Chr3g0471151
rosa_laevigata	RLG00000024202 RLG00000034780
rosa_multiflora	Rmu_sc0005416.1_g000041 Rmu_sc0010073.1_g000009 Rmu_sc0010073.1_g000010 Rmu_sc0010073.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410270
rosa_rugosa	Rorug03G0115600 Rorug03G0115700 Rorug05G0169000
rosa_samantha	Rh3AG164600 Rh3BG190200 Rh3CG180500 Rh5BG260300 Rh5DG269800
rosa_wichuraiana	Rw3G015530 Rw5G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	55
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	857
AcsI	RAATTY	2 cut(s)	182, 686
AcuI	CTGAAG	3 cut(s)	230, 490, 549
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	791
AgsI	TTSAA	7 cut(s)	233, 291, 310, 413, 575, 725, 1271
AhdI	GACNNNNNGTC	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	427, 469
AjuI	GAANNNNNNNTTGG	4 cut(s)	882, 914, 1086, 1118
AluBI	AGCT	9 cut(s)	72, 244, 299, 360, 466, 561, 750, 1223, 1318
AluI	AGCT	9 cut(s)	72, 244, 299, 360, 466, 561, 750, 1223, 1318
AlwI	GGATC	1 cut(s)	857
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	3 cut(s)	273, 862, 992
ApeKI	GCWGC	3 cut(s)	205, 342, 433
ApoI	RAATTY	2 cut(s)	182, 686
ArsI	GACNNNNNNTTYG	1 cut(s)	1294
AspS9I	GGNCC	2 cut(s)	274, 473
AsuHPI	GGTGA	4 cut(s)	70, 565, 1126, 1175
AvaII	GGWCC	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	886
BbsI	GAAGAC	2 cut(s)	240, 1251
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	192, 329, 420
BccI	CCATC	4 cut(s)	1077, 1118, 1147, 1151
BciT130I	CCWGG	2 cut(s)	429, 471
BclI	TGATCA	2 cut(s)	870, 984
BfaI	CTAG	3 cut(s)	39, 218, 675
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	3 cut(s)	206, 343, 434
BlpI	GCTNAGC	3 cut(s)	356, 462, 1005
BlsI	GCNGC	3 cut(s)	207, 344, 435
Bme1390I	CCNGG	2 cut(s)	429, 471
Bme18I	GGWCC	1 cut(s)	473
BmeRI	GACNNNNNGTC	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	274, 473
BmiI	GGNNCC	2 cut(s)	426, 885
BmrFI	CCNGG	2 cut(s)	429, 471
BpiI	GAAGAC	2 cut(s)	240, 1251
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu1102I	GCTNAGC	3 cut(s)	356, 462, 1005
BpuEI	CTTGAG	4 cut(s)	82, 889, 934, 1234
BsaJI	CCNNGG	4 cut(s)	251, 317, 331, 428
BsaWI	WCCGGW	2 cut(s)	137, 490
BsaXI	ACNNNNNCTCC	6 cut(s)	806, 821, 836, 851, 1098, 1128
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	722
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	429, 471
BseDI	CCNNGG	4 cut(s)	251, 317, 331, 428
BseGI	GGATG	3 cut(s)	505, 1096, 1162
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	314, 476, 579, 996
BseRI	GAGGAG	2 cut(s)	605, 845
BseXI	GCAGC	3 cut(s)	192, 329, 420
BshFI	GGCC	3 cut(s)	275, 864, 994
BshNI	GGYRCC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	138, 491
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	3 cut(s)	275, 864, 994
Bsp1286I	GDGCHC	1 cut(s)	886
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
Bsp1720I	GCTNAGC	3 cut(s)	356, 462, 1005
Bsp19I	CCATGG	2 cut(s)	251, 331
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	3 cut(s)	275, 864, 994
BspCNI	CTCAG	4 cut(s)	313, 475, 580, 997
BspEI	TCCGGA	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	426, 885
BspPI	GGATC	1 cut(s)	857
BspQI	GCTCTTC	2 cut(s)	50, 1213
BspT107I	GGYRCC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	722
BssECI	CCNNGG	4 cut(s)	251, 317, 331, 428
BssMI	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
BssT1I	CCWWGG	3 cut(s)	251, 317, 331
Bst2UI	CCWGG	2 cut(s)	429, 471
Bst6I	CTCTTC	4 cut(s)	50, 853, 1089, 1213
BstC8I	GCNNGC	2 cut(s)	203, 713
BstDEI	CTNAG	6 cut(s)	300, 356, 456, 462, 588, 1005
BstDSI	CCRYGG	2 cut(s)	251, 331
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	505, 1096, 1162
BstKTI	GATC	8 cut(s)	125, 133, 743, 852, 873, 987, 1032, 1050
BstMBI	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 433, 654
BstNI	CCWGG	2 cut(s)	429, 471
BstNSI	RCATGY	4 cut(s)	205, 795, 969, 1258
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	427, 469
BstV1I	GCAGC	3 cut(s)	192, 329, 420
BstV2I	GAAGAC	2 cut(s)	240, 1251
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
BsuRI	GGCC	3 cut(s)	275, 864, 994
BtgI	CCRYGG	2 cut(s)	251, 331
BtgZI	GCGATG	1 cut(s)	1227
BtsCI	GGATG	3 cut(s)	505, 1096, 1162
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	350, 1148
Cac8I	GCNNGC	2 cut(s)	203, 713
Cfr13I	GGNCC	2 cut(s)	274, 473
Csp6I	GTAC	1 cut(s)	226
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	6 cut(s)	300, 356, 456, 462, 588, 1005
DpnI	GATC	8 cut(s)	124, 132, 742, 851, 872, 986, 1031, 1049
DpnII	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
DraI	TTTAAA	1 cut(s)	1044
DriI	GACNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	4 cut(s)	50, 853, 1089, 1213
Eam1105I	GACNNNNNGTC	1 cut(s)	479
EarI	CTCTTC	4 cut(s)	50, 853, 1089, 1213
Eco130I	CCWWGG	3 cut(s)	251, 317, 331
Eco147I	AGGCCT	1 cut(s)	864
Eco24I	GRGCYC	1 cut(s)	886
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	3 cut(s)	230, 490, 549
Eco91I	GGTNACC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	427, 469
EcoT14I	CCWWGG	3 cut(s)	251, 317, 331
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	886
ErhI	CCWWGG	3 cut(s)	251, 317, 331
FalI	AAGNNNNNCTT	4 cut(s)	263, 295, 1243, 1275
FaqI	GGGAC	1 cut(s)	524
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	15
FbaI	TGATCA	2 cut(s)	870, 984
Fnu4HI	GCNGC	3 cut(s)	206, 343, 434
FokI	GGATG	3 cut(s)	512, 1103, 1169
FriOI	GRGCYC	1 cut(s)	886
Fsp4HI	GCNGC	3 cut(s)	206, 343, 434
FspBI	CTAG	3 cut(s)	39, 218, 675
GluI	GCNGC	3 cut(s)	206, 343, 434
HaeIII	GGCC	3 cut(s)	275, 864, 994
HapII	CCGG	2 cut(s)	138, 491
HindIII	AAGCTT	2 cut(s)	242, 1316
HinfI	GANTC	7 cut(s)	19, 107, 517, 703, 725, 1072, 1267
HpaII	CCGG	2 cut(s)	138, 491
HphI	GGTGA	4 cut(s)	70, 565, 1126, 1175
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	4 cut(s)	268, 303, 664, 1314
Hpy188III	TCNNGA	7 cut(s)	99, 120, 126, 138, 521, 675, 1271
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	5 cut(s)	595, 953, 1129, 1163, 1204
HpyCH4V	TGCA	7 cut(s)	114, 208, 258, 569, 627, 715, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 433, 654
HpyF3I	CTNAG	6 cut(s)	300, 356, 456, 462, 588, 1005
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	2 cut(s)	870, 984
Kzo9I	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
LguI	GCTCTTC	2 cut(s)	50, 1213
LmnI	GCTCC	1 cut(s)	889
Lsp1109I	GCAGC	3 cut(s)	192, 329, 420
MaeI	CTAG	3 cut(s)	39, 218, 675
MaeIII	GTNAC	4 cut(s)	76, 397, 481, 680
MalI	GATC	8 cut(s)	124, 132, 742, 851, 872, 986, 1031, 1049
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	740
MhlI	GDGCHC	1 cut(s)	886
MlyI	GAGTC	2 cut(s)	116, 712
MmeI	TCCRAC	2 cut(s)	923, 1084
Mph1103I	ATGCAT	1 cut(s)	116
MroI	TCCGGA	1 cut(s)	137
MseI	TTAA	6 cut(s)	189, 564, 929, 1017, 1043, 1321
MslI	CAYNNNNRTG	2 cut(s)	172, 582
MspI	CCGG	2 cut(s)	138, 491
MspR9I	CCNGG	2 cut(s)	429, 471
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	2 cut(s)	429, 471
MwoI	GCNNNNNNNGC	3 cut(s)	211, 433, 654
NcoI	CCATGG	2 cut(s)	251, 331
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
NlaIV	GGNNCC	2 cut(s)	426, 885
NmuCI	GTSAC	2 cut(s)	76, 481
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	4 cut(s)	205, 795, 969, 1258
PaeI	GCATGC	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	864
PciI	ACATGT	1 cut(s)	791
PciSI	GCTCTTC	2 cut(s)	50, 1213
PfeI	GAWTC	5 cut(s)	19, 517, 725, 1072, 1267
PkrI	GCNGC	3 cut(s)	207, 344, 435
PleI	GAGTC	2 cut(s)	115, 711
PpsI	GAGTC	2 cut(s)	115, 711
PscI	ACATGT	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	427, 469
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	2 cut(s)	427, 469
PspN4I	GGNNCC	2 cut(s)	426, 885
PspPI	GGNCC	2 cut(s)	274, 473
PsuI	RGATCY	1 cut(s)	740
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	172, 582
SapI	GCTCTTC	2 cut(s)	50, 1213
SaqAI	TTAA	6 cut(s)	189, 564, 929, 1017, 1043, 1321
SatI	GCNGC	3 cut(s)	206, 343, 434
Sau3AI	GATC	8 cut(s)	122, 130, 740, 849, 870, 984, 1029, 1047
Sau96I	GGNCC	2 cut(s)	274, 473
SchI	GAGTC	2 cut(s)	116, 712
ScrFI	CCNGG	2 cut(s)	429, 471
SduI	GDGCHC	1 cut(s)	886
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	172, 582
SmlI	CTYRAG	4 cut(s)	97, 904, 949, 1249
SmoI	CTYRAG	4 cut(s)	97, 904, 949, 1249
SphI	GCATGC	1 cut(s)	205
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	1 cut(s)	55
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	39, 218, 675
StuI	AGGCCT	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	427, 469
StyI	CCWWGG	3 cut(s)	251, 317, 331
TaqI	TCGA	2 cut(s)	121, 1300
TfiI	GAWTC	5 cut(s)	19, 517, 725, 1072, 1267
Tru1I	TTAA	6 cut(s)	189, 564, 929, 1017, 1043, 1321
Tru9I	TTAA	6 cut(s)	189, 564, 929, 1017, 1043, 1321
TscAI	CASTG	2 cut(s)	357, 1155
TseFI	GTSAC	2 cut(s)	76, 481
TseI	GCWGC	3 cut(s)	205, 342, 433
Tsp45I	GTSAC	2 cut(s)	76, 481
TspDTI	ATGAA	4 cut(s)	819, 1107, 1230, 1305
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	357, 1155
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	2 cut(s)	182, 686
XbaI	TCTAGA	1 cut(s)	674
XceI	RCATGY	4 cut(s)	205, 795, 969, 1258
XcmI	CCANNNNNNNNNTGG	2 cut(s)	31, 987
XspI	CTAG	3 cut(s)	39, 218, 675
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.