FvH4_6g23281

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003053
Physical Location & Seq
Forward (+)
17269939 .. 17278936
8998 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23281.t4

Sequence Viewer

Length: 1959 bp
ATGGACGGAGGGAAGAGGAAGCAGAAACCCCCGTCCATCACTCTCGACCAGTTCATCTCCCTCACCGCTCCTCTCATCGACTTGGAAAAGGAAGCGGAGATATCGGCCTCCATCACCAGCGGCGCCTCCAGGAATCTCGACACTGCTCAAAAGATAGGCTCCGCCATTCTCAATCTGAAGTGCGTCGATGCTCAGACAGGACTAATGGGAAAGACTCTTCTTGAGTTCCAGTCTACCAAAACAGAAAACAGTAATGCTCTTCCTCTTCCTCCTCACAAGTTTGGCACACATGATGTGGTTGTTCTAAGACCGAACAAGGCTGATTTGGGCTCACCTGCTCTTGGACAAGGCGTCGTGTACCGGTTAAAGGACTCATCAATCACTGTCGCTTTTGATGACATTCCTGAAGACGGATTAAATAGTCCCCTACGGTTAGAGAAACTCACAAATGAGGTTACATATCGTAGGATGAAGGACGCTCTGATACAATTGAGTAAAGGTGTGCAAAAGGGTCCTGCTTCTGATTTAATTCCTGTCTTGTTTGGAGAGAGGGCACCAACAGTGGCTAAGAAGGAAGTCACATTCTCCCCATTTAACAAAAACCTGGATCACTCTCAGAAAGATGCCATTTCAAAGGCTCTGTCATCCAAGAATGTATTTTTGCTGCATGGGCCTCCTGGAACAGGAAAAACCACAACTGTGGTGGAAATTGTTTTGCAAGAAGTCAAACGTGGATCAAAGATCCTTGCATGTGCTGCTTCGAATATTGCTGTTGACAACATTGTTGAGCGATTGGCGCGCCAAAGAGTAAAGTTAGTGAGATTGGGACATCCTGCACGTTTACTACCTCAAGTACTGGATAGTGCATTGGATGCACAGGTCTTGCGAGGAGATAACAGTTCTCTGGCAAATGACATTCGAAAGGAAATGAAGCAATTGAATGGAAAGCTATTAAGAACCAAAGACAAAAACACTAGGAGGGAAATCCAGAAAGAGCTAAGGATTCTTTCCAAGGAGGAACGTAAAAGGCAGCAGCTTGCTGTGACAGATGTAATAAAAAATGCAGATGTGGTGTTGACAACTTTGACTGGGGCATCGTCTCGCAAGCTGGACCACATATCATTTGATTTGGTGATTATTGATGAAGCTGCACAGGCACTTGAGATAGCATGCTGGATAGCACTGCTTAAGGGTTCAAGATGTATACTTGCAGGCGATCATCTTCAGCTTCCTCCAACCATCCAGAGTGCTGAAGCTGAGAAGAAAGGTTTAGGAAGAACCCTTTTTGAACGCCTTGCGGACATATACGGAAACAAAGTCGTATCTATGCTGACTGTTCAGTACCGCATGCATGAGCGTATCATGGATTGGTCATCAAAGGAGCTTTACAATAGTAAGGTTAAAGCCCATCCAAGTGTTGCTGGACATATGCTTTTGGATCTTGAGGATGTAAAGAAGACTTCTTCAACAGAGTCAACCCTTCTTCTAATTGATATAGCTGGGTGTGACATGGAAGAAAAGAAGGATGAAGAGGAAAGCACTATGAATGAGGGTGAAGCTGATGTTGCTATTGCCCATGCAAAGAGACTCATTCAAAGCGGTGTCCAGGCTTCTGATATTGGAATTATCACCCCTTATGCTGCACAGGTTTTCATACTGAAGAAGTTGAAAAGCAATGAAGAAAAGCTAAAGGATTTGGAAATTTCAACAGTCGATGGCTTCCAAGGCCGGGAAAAGGAAGCCATCATTATTTCAATGGTTCGGTCAAACTCAAACAGAGAGGTTGGGTTTCTGAGCGATCACAGGCGAATGAATGTGGCTGTGACACGAGCAAGGAGGCAATGTTGTCTTGTCTGTGATACTGAGACAGTGAGTAACGATGCATTCTTGAAGCGATTGATAGAGTACTTTGAGGAGCATGGTGAGTATCTAAGTGCCTCAGAGTATAGCAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

653

Amino Acids

72.03

Weight (kDa)

8.39

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMUBP-2_HCS1_1B PF21138 24 - 134 6.5e-16 Helicase SMUBP-2/HCS1, 1B domain
AAA_11 PF13086 201 - 416 1.4e-66 AAA domain
AAA_30 PF13604 202 - 411 3.1e-09 AAA domain
AAA_19 PF13245 206 - 413 3.7e-11 AAA domain
AAA_12 PF13087 425 - 594 4.9e-47 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 2 cut(s) 122, 553
AccBSI CCGCTC 1 cut(s) 68
AccI GTMKAC 2 cut(s) 233, 1204
AccII CGCG 1 cut(s) 799
AciI CCGC 7 cut(s) 66, 95, 120, 162, 1298, 1345, 1599
AclWI GGATC 4 cut(s) 615, 736, 742, 1446
AcsI RAATTY 1 cut(s) 1701
AcuI CTGAAG 5 cut(s) 197, 426, 1208, 1272, 1679
AcyI GRCGYC 2 cut(s) 123, 351
AfaI GTAC 4 cut(s) 359, 855, 1343, 1907
AfiI CCNNNNNNNGG 6 cut(s) 341, 367, 410, 683, 1729, 1735
AflII CTTAAG 1 cut(s) 1187
AgeI ACCGGT 1 cut(s) 360
AhdI GACNNNNNGTC 1 cut(s) 350
AjnI CCWGG 4 cut(s) 128, 603, 676, 1605
AleI CACNNNNGTG 1 cut(s) 698
Alw26I GTCTC 3 cut(s) 1104, 1579, 1859
AlwI GGATC 4 cut(s) 615, 736, 742, 1446
AoxI GGCC 3 cut(s) 105, 671, 1726
ApeKI GCWGC 6 cut(s) 664, 755, 1030, 1033, 1148, 1640
ApoI RAATTY 1 cut(s) 1701
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AscI GGCGCGCC 1 cut(s) 797
AsiGI ACCGGT 1 cut(s) 360
AspLEI GCGC 3 cut(s) 125, 799, 801
AspS9I GGNCC 3 cut(s) 512, 671, 1111
AsuC2I CCSGG 1 cut(s) 1730
AsuHPI GGTGA 7 cut(s) 55, 106, 324, 1144, 1565, 1621, 1934
AsuII TTCGAA 2 cut(s) 761, 919
AvaII GGWCC 2 cut(s) 512, 1111
BaeGI GKGCMC 1 cut(s) 556
BanI GGYRCC 2 cut(s) 122, 553
BanII GRGCYC 1 cut(s) 332
BauI CACGAG 1 cut(s) 1827
BbsI GAAGAC 2 cut(s) 414, 1463
BbvI GCAGC 6 cut(s) 651, 742, 1042, 1045, 1135, 1627
BccI CCATC 6 cut(s) 44, 119, 1247, 1416, 1709, 1751
BciT130I CCWGG 4 cut(s) 130, 605, 678, 1607
BcnI CCSGG 1 cut(s) 1730
BcoDI GTCTC 3 cut(s) 1104, 1579, 1859
BfaI CTAG 1 cut(s) 975
BfoI RGCGCY 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 1187
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 7 cut(s) 121, 665, 756, 1031, 1034, 1149, 1641
BlsI GCNGC 7 cut(s) 122, 666, 757, 1032, 1035, 1150, 1642
BmcAI AGTACT 2 cut(s) 855, 1907
Bme1390I CCNGG 5 cut(s) 130, 605, 678, 1607, 1730
Bme18I GGWCC 2 cut(s) 512, 1111
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgT120I GGNCC 3 cut(s) 512, 671, 1111
BmiI GGNNCC 4 cut(s) 124, 160, 513, 555
BmrFI CCNGG 5 cut(s) 130, 605, 678, 1607, 1730
BmrI ACTGGG 1 cut(s) 1098
BmsI GCATC 5 cut(s) 178, 613, 862, 1103, 1870
BmuI ACTGGG 1 cut(s) 1098
BpiI GAAGAC 2 cut(s) 414, 1463
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 998
Bpu14I TTCGAA 2 cut(s) 761, 919
BpuEI CTTGAG 4 cut(s) 242, 834, 1181, 1463
BpuMI CCSGG 1 cut(s) 1730
BsaHI GRCGYC 2 cut(s) 123, 351
BsaJI CCNNGG 2 cut(s) 1011, 1723
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 1828, 1858
Bsc4I CCNNNNNNNGG 6 cut(s) 341, 367, 410, 683, 1729, 1735
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 4 cut(s) 49, 229, 861, 1093
Bse3DI GCAATG 3 cut(s) 1681, 1847, 1957
BseBI CCWGG 4 cut(s) 130, 605, 678, 1607
BseDI CCNNGG 2 cut(s) 1011, 1723
BseGI GGATG 8 cut(s) 474, 644, 829, 877, 1239, 1408, 1453, 1531
BseLI CCNNNNNNNGG 6 cut(s) 341, 367, 410, 683, 1729, 1735
BseMI GCAATG 3 cut(s) 1681, 1847, 1957
BseMII CTCAG 6 cut(s) 206, 629, 1248, 1784, 1854, 1953
BseNI ACTGG 4 cut(s) 49, 229, 861, 1093
BsePI GCGCGC 1 cut(s) 797
BseRI GAGGAG 4 cut(s) 60, 261, 903, 1928
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 6 cut(s) 651, 742, 1042, 1045, 1135, 1627
BseYI CCCAGC 1 cut(s) 1499
BsgI GTGCAG 3 cut(s) 819, 1134, 1626
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 3 cut(s) 107, 673, 1728
BshNI GGYRCC 2 cut(s) 122, 553
BshTI ACCGGT 1 cut(s) 360
BsiSI CCGG 2 cut(s) 361, 1729
BslFI GGGAC 2 cut(s) 408, 840
BslI CCNNNNNNNGG 6 cut(s) 341, 367, 410, 683, 1729, 1735
BsmAI GTCTC 3 cut(s) 1104, 1579, 1859
BsmBI CGTCTC 1 cut(s) 1104
BsmFI GGGAC 2 cut(s) 408, 840
BsmI GAATGC 1 cut(s) 1883
BsnI GGCC 3 cut(s) 107, 673, 1728
Bsp119I TTCGAA 2 cut(s) 761, 919
Bsp1286I GDGCHC 2 cut(s) 332, 556
Bsp143I GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
BspACI CCGC 7 cut(s) 66, 95, 120, 162, 1298, 1345, 1599
BspANI GGCC 3 cut(s) 107, 673, 1728
BspCNI CTCAG 6 cut(s) 205, 628, 1249, 1785, 1855, 1952
BspFNI CGCG 1 cut(s) 799
BspLI GGNNCC 4 cut(s) 124, 160, 513, 555
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 615, 736, 742, 1446
BspQI GCTCTTC 1 cut(s) 264
BspT104I TTCGAA 2 cut(s) 761, 919
BspT107I GGYRCC 2 cut(s) 122, 553
BspTI CTTAAG 1 cut(s) 1187
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 3 cut(s) 1681, 1847, 1957
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 4 cut(s) 49, 229, 861, 1093
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 1011, 1723
BssHII GCGCGC 1 cut(s) 797
BssMI GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
BssNAI GTATAC 1 cut(s) 1205
BssNI GRCGYC 2 cut(s) 123, 351
BssSI CACGAG 1 cut(s) 1827
BssT1I CCWWGG 2 cut(s) 1011, 1723
Bst1107I GTATAC 1 cut(s) 1205
Bst2BI CACGAG 1 cut(s) 1827
Bst2UI CCWGG 4 cut(s) 130, 605, 678, 1607
Bst4CI ACNGT 9 cut(s) 251, 385, 432, 562, 700, 899, 1336, 1711, 1870
Bst6I CTCTTC 5 cut(s) 8, 222, 264, 270, 1524
BstACI GRCGYC 2 cut(s) 123, 351
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 2 cut(s) 755, 872
BstBI TTCGAA 2 cut(s) 761, 919
BstC8I GCNNGC 6 cut(s) 799, 1038, 1106, 1171, 1213, 1349
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 8 cut(s) 474, 644, 829, 877, 1239, 1408, 1453, 1531
BstFNI CGCG 1 cut(s) 799
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 3 cut(s) 125, 799, 801
BstKTI GATC 6 cut(s) 610, 737, 744, 1219, 1441, 1801
BstMAI GTCTC 3 cut(s) 1104, 1579, 1859
BstMBI GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
BstMWI GCNNNNNNNGC 7 cut(s) 670, 755, 796, 872, 1154, 1565, 1725
BstNI CCWGG 4 cut(s) 130, 605, 678, 1607
BstNSI RCATGY 3 cut(s) 753, 1173, 1351
BstSCI CCNGG 5 cut(s) 128, 603, 676, 1605, 1728
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 6 cut(s) 651, 742, 1042, 1045, 1135, 1627
BstV2I GAAGAC 2 cut(s) 414, 1463
BstX2I RGATCY 2 cut(s) 741, 1438
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 2 cut(s) 741, 1438
BstZ17I GTATAC 1 cut(s) 1205
BsuRI GGCC 3 cut(s) 107, 673, 1728
BtsCI GGATG 8 cut(s) 474, 644, 829, 877, 1239, 1408, 1453, 1531
BtsI GCAGTG 2 cut(s) 141, 1181
BtsIMutI CAGTG 5 cut(s) 141, 381, 567, 1181, 1875
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 6 cut(s) 799, 1038, 1106, 1171, 1213, 1349
CfoI GCGC 3 cut(s) 125, 799, 801
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 512, 671, 1111
CseI GACGC 3 cut(s) 172, 340, 485
Csp6I GTAC 4 cut(s) 358, 854, 1342, 1906
CspAI ACCGGT 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviQI GTAC 4 cut(s) 358, 854, 1342, 1906
DinI GGCGCC 1 cut(s) 124
DpnI GATC 6 cut(s) 609, 736, 743, 1218, 1440, 1800
DpnII GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
DriI GACNNNNNGTC 1 cut(s) 350
Eam1104I CTCTTC 5 cut(s) 8, 222, 264, 270, 1524
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 5 cut(s) 8, 222, 264, 270, 1524
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 1011, 1723
Eco24I GRGCYC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 512, 1111
Eco57I CTGAAG 5 cut(s) 197, 426, 1208, 1272, 1679
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 4 cut(s) 128, 603, 676, 1605
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 1011, 1723
EcoT22I ATGCAT 2 cut(s) 1353, 1885
EcoT38I GRGCYC 1 cut(s) 332
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 2 cut(s) 1011, 1723
Esp3I CGTCTC 1 cut(s) 1104
FaqI GGGAC 2 cut(s) 408, 840
FauNDI CATATG 1 cut(s) 1428
FblI GTMKAC 2 cut(s) 233, 1204
Fnu4HI GCNGC 7 cut(s) 121, 665, 756, 1031, 1034, 1149, 1641
FokI GGATG 8 cut(s) 481, 631, 816, 884, 1226, 1395, 1460, 1538
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 7 cut(s) 121, 665, 756, 1031, 1034, 1149, 1641
FspBI CTAG 1 cut(s) 975
GlaI GCGC 3 cut(s) 124, 798, 800
GluI GCNGC 7 cut(s) 121, 665, 756, 1031, 1034, 1149, 1641
GsaI CCCAGC 1 cut(s) 1503
GsuI CTGGAG 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 3 cut(s) 107, 673, 1728
HapII CCGG 2 cut(s) 361, 1729
HgaI GACGC 3 cut(s) 172, 340, 485
HhaI GCGC 3 cut(s) 125, 799, 801
Hin1I GRCGYC 2 cut(s) 123, 351
Hin6I GCGC 3 cut(s) 123, 797, 799
HinP1I GCGC 3 cut(s) 123, 797, 799
HincII GTYRAC 3 cut(s) 775, 1077, 1476
HindII GTYRAC 3 cut(s) 775, 1077, 1476
HinfI GANTC 6 cut(s) 133, 214, 371, 1003, 1472, 1587
HpaII CCGG 2 cut(s) 361, 1729
HphI GGTGA 7 cut(s) 55, 106, 324, 1144, 1565, 1621, 1934
Hpy166II GTNNAC 7 cut(s) 234, 358, 775, 842, 1077, 1205, 1476
Hpy188I TCNGA 8 cut(s) 177, 195, 483, 523, 618, 1615, 1794, 1942
Hpy188III TCNNGA 9 cut(s) 44, 137, 221, 404, 988, 1197, 1243, 1442, 1888
Hpy8I GTNNAC 7 cut(s) 234, 358, 775, 842, 1077, 1205, 1476
Hpy99I CGWCG 2 cut(s) 188, 356
HpyAV CCTTC 4 cut(s) 466, 565, 1490, 1516
HpyCH4III ACNGT 9 cut(s) 251, 385, 432, 562, 700, 899, 1336, 1711, 1870
HpyCH4IV ACGT 3 cut(s) 730, 838, 1021
HpyF10VI GCNNNNNNNGC 7 cut(s) 670, 755, 796, 872, 1154, 1565, 1725
HpySE526I ACGT 3 cut(s) 730, 838, 1021
Hsp92I GRCGYC 2 cut(s) 123, 351
HspAI GCGC 3 cut(s) 123, 797, 799
KasI GGCGCC 1 cut(s) 122
Kzo9I GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
LguI GCTCTTC 1 cut(s) 264
LmnI GCTCC 4 cut(s) 73, 164, 1381, 1915
Lsp1109I GCAGC 6 cut(s) 651, 742, 1042, 1045, 1135, 1627
LweI GCATC 5 cut(s) 178, 613, 862, 1103, 1870
MaeI CTAG 1 cut(s) 975
MaeII ACGT 3 cut(s) 730, 838, 1021
MaeIII GTNAC 6 cut(s) 454, 577, 1042, 1505, 1822, 1874
MalI GATC 6 cut(s) 609, 736, 743, 1218, 1440, 1800
MbiI CCGCTC 1 cut(s) 68
MboI GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
MfeI CAATTG 2 cut(s) 488, 935
MflI RGATCY 2 cut(s) 741, 1438
MhlI GDGCHC 2 cut(s) 332, 556
MluCI AATT 7 cut(s) 488, 528, 708, 935, 1488, 1623, 1701
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 4 cut(s) 208, 365, 1481, 1581
MmeI TCCRAC 1 cut(s) 1259
Mph1103I ATGCAT 2 cut(s) 1353, 1885
MseI TTAA 7 cut(s) 365, 416, 527, 594, 953, 1188, 1401
MslI CAYNNNNRTG 2 cut(s) 698, 1413
MspA1I CMGCKG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 2 cut(s) 361, 1729
MspR9I CCNGG 5 cut(s) 130, 605, 678, 1607, 1730
MunI CAATTG 2 cut(s) 488, 935
Mva1269I GAATGC 1 cut(s) 1883
MvaI CCWGG 4 cut(s) 130, 605, 678, 1607
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 7 cut(s) 670, 755, 796, 872, 1154, 1565, 1725
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 1 cut(s) 1730
NdeI CATATG 1 cut(s) 1428
NdeII GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
NlaIV GGNNCC 4 cut(s) 124, 160, 513, 555
NmuCI GTSAC 4 cut(s) 577, 1042, 1505, 1822
NsiI ATGCAT 2 cut(s) 1353, 1885
NspI RCATGY 3 cut(s) 753, 1173, 1351
NspV TTCGAA 2 cut(s) 761, 919
OliI CACNNNNGTG 1 cut(s) 698
PaeI GCATGC 2 cut(s) 1173, 1351
PalAI GGCGCGCC 1 cut(s) 797
PaqCI CACCTGC 1 cut(s) 343
PauI GCGCGC 1 cut(s) 797
PciSI GCTCTTC 1 cut(s) 264
PctI GAATGC 1 cut(s) 1883
PfeI GAWTC 2 cut(s) 133, 1003
PfoI TCCNGGA 2 cut(s) 128, 676
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 7 cut(s) 122, 666, 757, 1032, 1035, 1150, 1642
PleI GAGTC 4 cut(s) 208, 365, 1480, 1581
PluTI GGCGCC 1 cut(s) 126
PpsI GAGTC 4 cut(s) 208, 365, 1480, 1581
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 4 cut(s) 128, 603, 676, 1605
PspFI CCCAGC 1 cut(s) 1499
PspGI CCWGG 4 cut(s) 128, 603, 676, 1605
PspN4I GGNNCC 4 cut(s) 124, 160, 513, 555
PspPI GGNCC 3 cut(s) 512, 671, 1111
PspPPI RGGWCCY 1 cut(s) 512
PsuI RGATCY 2 cut(s) 741, 1438
PteI GCGCGC 1 cut(s) 797
RsaI GTAC 4 cut(s) 359, 855, 1343, 1907
RsaNI GTAC 4 cut(s) 358, 854, 1342, 1906
RseI CAYNNNNRTG 2 cut(s) 698, 1413
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 7 cut(s) 365, 416, 527, 594, 953, 1188, 1401
SatI GCNGC 7 cut(s) 121, 665, 756, 1031, 1034, 1149, 1641
Sau3AI GATC 6 cut(s) 607, 734, 741, 1216, 1438, 1798
Sau96I GGNCC 3 cut(s) 512, 671, 1111
ScaI AGTACT 2 cut(s) 855, 1907
SchI GAGTC 4 cut(s) 208, 365, 1481, 1581
ScrFI CCNGG 5 cut(s) 130, 605, 678, 1607, 1730
SduI GDGCHC 2 cut(s) 332, 556
SfaNI GCATC 5 cut(s) 178, 613, 862, 1103, 1870
SfoI GGCGCC 1 cut(s) 124
SfuI TTCGAA 2 cut(s) 761, 919
SgsI GGCGCGCC 1 cut(s) 797
SinI GGWCC 2 cut(s) 512, 1111
SmiMI CAYNNNNRTG 2 cut(s) 698, 1413
SmlI CTYRAG 5 cut(s) 221, 849, 1160, 1187, 1442
SmoI CTYRAG 5 cut(s) 221, 849, 1160, 1187, 1442
SphI GCATGC 2 cut(s) 1173, 1351
Sse9I AATT 7 cut(s) 488, 528, 708, 935, 1488, 1623, 1701
SsiI CCGC 7 cut(s) 66, 95, 120, 162, 1298, 1345, 1599
SspDI GGCGCC 1 cut(s) 122
SspI AATATT 1 cut(s) 766
SspMI CTAG 1 cut(s) 975
StyD4I CCNGG 5 cut(s) 128, 603, 676, 1605, 1728
StyI CCWWGG 2 cut(s) 1011, 1723
TaaI ACNGT 9 cut(s) 251, 385, 432, 562, 700, 899, 1336, 1711, 1870
TaiI ACGT 3 cut(s) 733, 841, 1024
TaqI TCGA 7 cut(s) 45, 78, 138, 186, 761, 919, 1713
TaqII GACCGA 2 cut(s) 325, 1752
TasI AATT 7 cut(s) 488, 528, 708, 935, 1488, 1623, 1701
TatI WGTACW 2 cut(s) 853, 1905
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 2 cut(s) 133, 1003
Tru1I TTAA 7 cut(s) 365, 416, 527, 594, 953, 1188, 1401
Tru9I TTAA 7 cut(s) 365, 416, 527, 594, 953, 1188, 1401
TscAI CASTG 5 cut(s) 148, 388, 567, 1188, 1875
TseFI GTSAC 4 cut(s) 577, 1042, 1505, 1822
TseI GCWGC 6 cut(s) 664, 755, 1030, 1033, 1148, 1640
Tsp45I GTSAC 4 cut(s) 577, 1042, 1505, 1822
TspDTI ATGAA 9 cut(s) 43, 485, 944, 1158, 1542, 1559, 1642, 1692, 1826
TspGWI ACGGA 3 cut(s) 21, 426, 1323
TspRI CASTG 5 cut(s) 148, 388, 567, 1188, 1875
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 2 cut(s) 512, 1111
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 1 cut(s) 1701
XceI RCATGY 3 cut(s) 753, 1173, 1351
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmiI GTMKAC 2 cut(s) 233, 1204
XspI CTAG 1 cut(s) 975
ZrmI AGTACT 2 cut(s) 855, 1907
Zsp2I ATGCAT 2 cut(s) 1353, 1885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.