Rmu_sc0031676.1_g000002

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031676.1
OG0003053
Physical Location & Seq
Forward (+)
1178 .. 1963
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031676.1_g000002.1.cds

Sequence Viewer

Length: 459 bp
atggatggagggaagacaaagccgcaatcccagtccataactctcgaacagttcatctccatcacttcccctctcattgacttggaaaaggaagccgagatatctgcctccatcactagcggcgcgtccaggaacttggatactgctcaaaagaagggctccgccattctcaatttgaagtgcgtcgatgctcagacaggactcatgggcaagactcttcttgagttccagtctaccaaaacagaaaacagtaatgctcttcctcttcctcctcacaagtttggcactcatgatgtggttgttctaagaccaaataaggctgatttgggctcacctgctcttggacaaggcgtagtttaccggttaaaggactcatcaatcacagttgcttttgatgacgttcccgaagacggattaaatggtcccctacggctagagaaactcacaaatgaagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

152

Amino Acids

16.23

Weight (kDa)

5.38

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 233
AccII CGCG 1 cut(s) 125
AciI CCGC 3 cut(s) 23, 120, 162
AfiI CCNNNNNNNGG 3 cut(s) 341, 367, 410
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 360
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 324
AvaII GGWCC 1 cut(s) 422
BanII GRGCYC 2 cut(s) 161, 332
BbsI GAAGAC 2 cut(s) 20, 414
BccI CCATC 2 cut(s) 68, 119
BceAI ACGGC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 130
BciVI GTATCC 1 cut(s) 133
BfaI CTAG 2 cut(s) 117, 434
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 2 cut(s) 23, 121
BlsI GCNGC 2 cut(s) 24, 122
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 160, 424
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 2 cut(s) 20, 414
BpuEI CTTGAG 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 367, 410
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 31, 229
BseBI CCWGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 341, 367, 410
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 2 cut(s) 31, 229
BseRI GAGGAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 125
BshTI ACCGGT 1 cut(s) 360
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 341, 367, 410
BsmFI GGGAC 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 161, 332
BspACI CCGC 3 cut(s) 23, 120, 162
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 160, 424
BspMI ACCTGC 1 cut(s) 343
BspQI GCTCTTC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 2 cut(s) 31, 229
BssAI RCCGGY 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 51, 251, 385
Bst6I CTCTTC 3 cut(s) 222, 264, 270
BstDEI CTNAG 2 cut(s) 192, 305
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 1 cut(s) 125
BstV2I GAAGAC 2 cut(s) 20, 414
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 343
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 2 cut(s) 114, 172
CspAI ACCGGT 1 cut(s) 360
CviAII CATG 2 cut(s) 205, 290
CviJI RGCY 6 cut(s) 22, 95, 159, 320, 330, 433
CviKI_1 RGCY 6 cut(s) 22, 95, 159, 320, 330, 433
DdeI CTNAG 2 cut(s) 192, 305
Eam1104I CTCTTC 3 cut(s) 222, 264, 270
EarI CTCTTC 3 cut(s) 222, 264, 270
EciI GGCGGA 1 cut(s) 151
Eco24I GRGCYC 2 cut(s) 161, 332
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 128
EcoRV GATATC 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 161, 332
FaeI CATG 2 cut(s) 208, 293
FaiI YATR 4 cut(s) 38, 206, 291, 457
FaqI GGGAC 1 cut(s) 408
FatI CATG 2 cut(s) 204, 289
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 23, 121
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 161, 332
Fsp4HI GCNGC 2 cut(s) 23, 121
FspBI CTAG 2 cut(s) 117, 434
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 23, 121
HapII CCGG 1 cut(s) 361
HgaI GACGC 2 cut(s) 114, 172
HhaI GCGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 208, 293
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 3 cut(s) 201, 214, 371
HpaII CCGG 1 cut(s) 361
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 2 cut(s) 234, 358
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 4 cut(s) 44, 221, 290, 404
Hpy8I GTNNAC 2 cut(s) 234, 358
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 3 cut(s) 51, 251, 385
HpyCH4IV ACGT 1 cut(s) 399
HpyF3I CTNAG 2 cut(s) 192, 305
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 208, 293
HspAI GCGC 1 cut(s) 123
LguI GCTCTTC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 7 cut(s) 44, 115, 142, 183, 242, 348, 374
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 117, 434
MaeII ACGT 1 cut(s) 399
MboII GAAGA 5 cut(s) 25, 209, 251, 257, 419
MhlI GDGCHC 2 cut(s) 161, 332
MluCI AATT 1 cut(s) 172
MlyI GAGTC 3 cut(s) 195, 208, 365
MnlI CCTC 5 cut(s) 81, 118, 273, 279, 282
MseI TTAA 2 cut(s) 365, 416
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 125
NlaIII CATG 2 cut(s) 208, 293
NlaIV GGNNCC 2 cut(s) 160, 424
NmeAIII GCCGAG 1 cut(s) 121
PagI TCATGA 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 2 cut(s) 24, 122
PleI GAGTC 3 cut(s) 195, 208, 365
PpsI GAGTC 3 cut(s) 195, 208, 365
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 160, 424
PspPI GGNCC 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 365, 416
SatI GCNGC 2 cut(s) 23, 121
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 3 cut(s) 195, 208, 365
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 2 cut(s) 161, 332
SetI ASST 2 cut(s) 337, 402
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 172
SsiI CCGC 3 cut(s) 23, 120, 162
SspMI CTAG 2 cut(s) 117, 434
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 3 cut(s) 51, 251, 385
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 45, 186
TasI AATT 1 cut(s) 172
TauI GCSGC 2 cut(s) 25, 123
Tru1I TTAA 2 cut(s) 365, 416
Tru9I TTAA 2 cut(s) 365, 416
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 2 cut(s) 117, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.