Rw3G021540

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003053
Physical Location & Seq
Forward (+)
26137573 .. 26138663
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021540.1

Sequence Viewer

Length: 417 bp
ATGAAGGACGCCTTGATACAATTGAGTAAAGGTGTGCACAAGGGTCCTGCTTCTGATTTAATTCCTGTCTTGTTTGGAGAGAGGGCACCAACCGTGGCTAAGAAGGAAGTCACATTCTCCCCATTTAACAAAAACCTTGATCACTCTCAGAAAGATGCCATTTCAAAGGCTCTGTCATCCAAGAATGTATTTTCGCTGCATGGGCCTCCTGGAACAGGCAAAACCACAACTGTGGTGGAAATTATATTGCAAGAAGTCAAACGTGGATCAAAGATCCTTGCATGTGCTGCTTCCAATATTGCTGTTGACAACATTGTTGAGCGACTGGCACGCCAAAGGTATTTCAGTGCCTATATATTTGAGGAATTCCTCTTCTATCAAAATTTGAGCTCTATCAAAACAAATACAAGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

138

Amino Acids

15.21

Weight (kDa)

9.58

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 45 - 111 3.2e-23 AAA domain
AAA_30 PF13604 46 - 109 1.9e-08 AAA domain
AAA_19 PF13245 50 - 112 2.3e-08 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AclWI GGATC 2 cut(s) 268, 274
AcsI RAATTY 2 cut(s) 365, 382
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 165
AjnI CCWGG 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 1 cut(s) 390
AluI AGCT 1 cut(s) 390
Alw21I GWGCWC 2 cut(s) 39, 392
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 2 cut(s) 268, 274
AoxI GGCC 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 196, 287
ApoI RAATTY 2 cut(s) 365, 382
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 2 cut(s) 44, 203
AvaII GGWCC 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 39, 88
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 392
Bbv12I GWGCWC 2 cut(s) 39, 392
BbvI GCAGC 2 cut(s) 183, 274
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 139
BisI GCNGC 2 cut(s) 197, 288
BlsI GCNGC 2 cut(s) 198, 289
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 44, 203
BmiI GGNNCC 2 cut(s) 45, 87
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 330
BseSI GKGCMC 2 cut(s) 39, 88
BseXI GCAGC 2 cut(s) 183, 274
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 39, 392
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 3 cut(s) 39, 88, 392
Bsp143I GATC 3 cut(s) 139, 266, 273
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 45, 87
BspPI GGATC 2 cut(s) 268, 274
BspT107I GGYRCC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 139, 266, 273
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 94, 232
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 99, 147
BstDSI CCRYGG 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 3 cut(s) 142, 269, 276
BstMBI GATC 3 cut(s) 139, 266, 273
BstMWI GCNNNNNNNGC 2 cut(s) 202, 287
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 208
BstSLI GKGCMC 2 cut(s) 39, 88
BstV1I GCAGC 2 cut(s) 183, 274
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 44, 203
CseI GACGC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 2 cut(s) 200, 282
CviJI RGCY 4 cut(s) 98, 170, 205, 390
CviKI_1 RGCY 4 cut(s) 98, 170, 205, 390
DdeI CTNAG 2 cut(s) 99, 147
DpnI GATC 3 cut(s) 141, 268, 275
DpnII GATC 3 cut(s) 139, 266, 273
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Ecl136II GAGCTC 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 390
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 392
FaeI CATG 2 cut(s) 203, 285
FaiI YATR 5 cut(s) 201, 245, 283, 354, 356
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 2 cut(s) 199, 281
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 197, 288
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 197, 288
GluI GCNGC 2 cut(s) 197, 288
HaeIII GGCC 1 cut(s) 205
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 203, 285
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 37, 307
Hpy188I TCNGA 2 cut(s) 55, 150
Hpy8I GTNNAC 2 cut(s) 37, 307
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 94, 232
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 4 cut(s) 37, 199, 250, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 287
HpyF3I CTNAG 2 cut(s) 99, 147
HpySE526I ACGT 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 203, 285
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 3 cut(s) 139, 266, 273
LpnPI CCDG 6 cut(s) 60, 78, 195, 201, 222, 311
Lsp1109I GCAGC 2 cut(s) 183, 274
LweI GCATC 1 cut(s) 145
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 141, 268, 275
MboI GATC 3 cut(s) 139, 266, 273
MboII GAAGA 1 cut(s) 364
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 3 cut(s) 39, 88, 392
MluCI AATT 5 cut(s) 20, 60, 240, 365, 382
MnlI CCTC 4 cut(s) 75, 216, 355, 380
MseI TTAA 2 cut(s) 59, 126
MslI CAYNNNNRTG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 202, 287
NdeII GATC 3 cut(s) 139, 266, 273
NlaIII CATG 2 cut(s) 203, 285
NlaIV GGNNCC 2 cut(s) 45, 87
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 285
OliI CACNNNNGTG 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 2 cut(s) 198, 289
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 45, 87
PspPI GGNCC 2 cut(s) 44, 203
PspPPI RGGWCCY 1 cut(s) 44
PsuI RGATCY 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 59, 126
SatI GCNGC 2 cut(s) 197, 288
Sau3AI GATC 3 cut(s) 139, 266, 273
Sau96I GGNCC 2 cut(s) 44, 203
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 3 cut(s) 39, 88, 392
SetI ASST 6 cut(s) 34, 138, 265, 341, 392, 413
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 5 cut(s) 20, 60, 240, 365, 382
SspI AATATT 1 cut(s) 298
SstI GAGCTC 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 94, 232
TaiI ACGT 1 cut(s) 265
TasI AATT 5 cut(s) 20, 60, 240, 365, 382
Tru1I TTAA 2 cut(s) 59, 126
Tru9I TTAA 2 cut(s) 59, 126
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 196, 287
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 352
VneI GTGCAC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 44
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 2 cut(s) 365, 382
XceI RCATGY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.