RLG00000023412

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003053
Physical Location & Seq
Reverse (-)
23289224 .. 23292169
2946 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023412

Sequence Viewer

Length: 690 bp
ATGCTCAGACAGGACTCATGGGCAAGACTCTTCTTGAGTTCCAGTCTACCAAAACAGAAAACAGTAATGCTCTTCCTCTTCCTCCTCACAAGACCAAATAAGGCTGATTTGGGCTCACCTGCTCTTGGACAAGGCGTAGTTTACCGGGTAAAGGACTCATCAATCACGGTTGCTTTTGATGACGTTCCCGAAGACGGATTAAATAGTCCCCTACGGCTAGAGAAACTCACAAATGAAGTGACATATCGAAGCATGAAGGACGCCTTGATACAATTGAGTAAAGGTGTGCACAAGGGTCCTGCTTCTGATTTAATTCCTGTCTTGTTTGGAGAGAGGGCACCAACCGTGGCTAAGAAGGAAGTCACATTCTCCCCATTTAACAAAAACCTTGATCACTCTCAGAAAGATGGCATTTCAAAGGCTCTGTCATCCAATAATGTATTTTTGCTGCATTGGCCTCCTGGAACAGGCAAAACCACAACTGTGATCCTTGCATGTCCTGCTTCCAATATTGATGTTGACAACATTGTTGAGCGACTGGCACGCCAAAGTCAAGCTATTGTTACTTTCGGATACTGCATACTAACTTCAAAATTCAGGAAAGTTCGGTGGTGTTTAGGAATCCGTATCACTATAGGAAACAGAGAAATTAGGAAACTTTGTTATCAAGTAAAGTCTAGCTGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

230

Amino Acids

25.55

Weight (kDa)

9.8

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 46
AclWI GGATC 1 cut(s) 481
AcsI RAATTY 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 4 cut(s) 125, 151, 194, 467
AgsI TTSAA 2 cut(s) 417, 591
AjnI CCWGG 1 cut(s) 460
AleI CACNNNNGTG 1 cut(s) 482
AluBI AGCT 2 cut(s) 557, 681
AluI AGCT 2 cut(s) 557, 681
Alw21I GWGCWC 1 cut(s) 291
Alw44I GTGCAC 1 cut(s) 287
AlwI GGATC 1 cut(s) 481
AoxI GGCC 1 cut(s) 455
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 448
ApoI RAATTY 1 cut(s) 593
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 108
AvaII GGWCC 1 cut(s) 296
BaeGI GKGCMC 2 cut(s) 291, 340
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 435
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 462
BciVI GTATCC 1 cut(s) 566
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 146
BfaI CTAG 2 cut(s) 218, 678
BfmI CTRYAG 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 127
BfuI GTATCC 1 cut(s) 566
BisI GCNGC 1 cut(s) 449
BlsI GCNGC 1 cut(s) 450
Bme1390I CCNGG 2 cut(s) 146, 462
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 297, 339
BmrFI CCNGG 2 cut(s) 146, 462
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 151, 194, 467
Bse1I ACTGG 2 cut(s) 42, 543
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 4 cut(s) 125, 151, 194, 467
BseMII CTCAG 2 cut(s) 19, 413
BseNI ACTGG 2 cut(s) 42, 543
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 2 cut(s) 291, 340
BseXI GCAGC 1 cut(s) 435
BshFI GGCC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 4 cut(s) 125, 151, 194, 467
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 3 cut(s) 116, 291, 340
Bsp143I GATC 2 cut(s) 391, 486
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 2 cut(s) 18, 412
BspLI GGNNCC 2 cut(s) 297, 339
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 481
BspQI GCTCTTC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 337
BsrI ACTGG 2 cut(s) 42, 543
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 391, 486
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 4 cut(s) 64, 169, 346, 484
Bst6I CTCTTC 3 cut(s) 35, 77, 83
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 544, 683
BstDEI CTNAG 3 cut(s) 5, 351, 399
BstDSI CCRYGG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 428
BstKTI GATC 2 cut(s) 394, 489
BstMBI GATC 2 cut(s) 391, 486
BstMWI GCNNNNNNNGC 2 cut(s) 454, 500
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 498
BstSCI CCNGG 2 cut(s) 144, 460
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 2 cut(s) 291, 340
BstV1I GCAGC 1 cut(s) 435
BstV2I GAAGAC 1 cut(s) 198
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 428
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 544, 683
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 1 cut(s) 269
CviAII CATG 3 cut(s) 18, 253, 495
CviJI RGCY 9 cut(s) 104, 114, 217, 350, 422, 457, 557, 681, 685
CviKI_1 RGCY 9 cut(s) 104, 114, 217, 350, 422, 457, 557, 681, 685
DdeI CTNAG 3 cut(s) 5, 351, 399
DpnI GATC 2 cut(s) 393, 488
DpnII GATC 2 cut(s) 391, 486
Eam1104I CTCTTC 3 cut(s) 35, 77, 83
EarI CTCTTC 3 cut(s) 35, 77, 83
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 296
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 3 cut(s) 21, 256, 498
FaiI YATR 6 cut(s) 19, 244, 254, 496, 581, 635
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 192
FatI CATG 3 cut(s) 17, 252, 494
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 449
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 449
FspBI CTAG 2 cut(s) 218, 678
GluI GCNGC 1 cut(s) 449
HaeIII GGCC 1 cut(s) 457
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 3 cut(s) 21, 256, 498
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 4 cut(s) 14, 27, 155, 621
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 4 cut(s) 47, 142, 289, 520
Hpy188I TCNGA 4 cut(s) 8, 307, 402, 572
Hpy188III TCNNGA 3 cut(s) 34, 188, 598
Hpy8I GTNNAC 4 cut(s) 47, 142, 289, 520
HpyAV CCTTC 2 cut(s) 250, 349
HpyCH4III ACNGT 4 cut(s) 64, 169, 346, 484
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 289, 451, 494, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 454, 500
HpyF3I CTNAG 3 cut(s) 5, 351, 399
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 3 cut(s) 21, 256, 498
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 391, 486
LguI GCTCTTC 1 cut(s) 77
Lsp1109I GCAGC 1 cut(s) 435
MaeI CTAG 2 cut(s) 218, 678
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 3 cut(s) 238, 361, 562
MalI GATC 2 cut(s) 393, 488
MboI GATC 2 cut(s) 391, 486
MboII GAAGA 4 cut(s) 22, 64, 70, 203
MfeI CAATTG 1 cut(s) 272
MhlI GDGCHC 3 cut(s) 116, 291, 340
MluCI AATT 4 cut(s) 272, 312, 593, 648
MlyI GAGTC 3 cut(s) 8, 21, 149
MnlI CCTC 5 cut(s) 86, 92, 95, 327, 468
MseI TTAA 3 cut(s) 200, 311, 378
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 146, 462
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 454, 500
NciI CCSGG 1 cut(s) 146
NdeII GATC 2 cut(s) 391, 486
NlaIII CATG 3 cut(s) 21, 256, 498
NlaIV GGNNCC 2 cut(s) 297, 339
NmuCI GTSAC 2 cut(s) 238, 361
NspI RCATGY 1 cut(s) 498
OliI CACNNNNGTG 1 cut(s) 482
PaqCI CACCTGC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 621
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 1 cut(s) 450
PleI GAGTC 3 cut(s) 8, 21, 149
PpsI GAGTC 3 cut(s) 8, 21, 149
PpuMI RGGWCCY 1 cut(s) 296
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 297, 339
PspPI GGNCC 1 cut(s) 296
PspPPI RGGWCCY 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 482
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 200, 311, 378
SatI GCNGC 1 cut(s) 449
Sau3AI GATC 2 cut(s) 391, 486
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 3 cut(s) 8, 21, 149
ScrFI CCNGG 2 cut(s) 146, 462
SduI GDGCHC 3 cut(s) 116, 291, 340
SetI ASST 6 cut(s) 121, 186, 286, 390, 559, 683
SfcI CTRYAG 1 cut(s) 633
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 4 cut(s) 272, 312, 593, 648
SspI AATATT 1 cut(s) 511
SspMI CTAG 2 cut(s) 218, 678
StyD4I CCNGG 2 cut(s) 144, 460
TaaI ACNGT 4 cut(s) 64, 169, 346, 484
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 247
TasI AATT 4 cut(s) 272, 312, 593, 648
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 3 cut(s) 200, 311, 378
Tru9I TTAA 3 cut(s) 200, 311, 378
TseFI GTSAC 2 cut(s) 238, 361
TseI GCWGC 1 cut(s) 448
Tsp45I GTSAC 2 cut(s) 238, 361
TspDTI ATGAA 2 cut(s) 249, 269
TspGWI ACGGA 2 cut(s) 210, 614
VneI GTGCAC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 296
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 2 cut(s) 218, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.