Rmu_sc0000064.1_g000002

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000064.1
OG0003053
Physical Location & Seq
Forward (+)
4521 .. 6739
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000064.1_g000002.1.cds

Sequence Viewer

Length: 897 bp
atggatggagggaagacaaagccgcaatctcagtccatcactcttgaacagttcatctccatcacttcccctctcattgacttggaaaaggaagccgagatatctgcctccatcactagcggcgcgtccaggaacttggatactgctcaaaagaagggctccgccattctcaatttgaagtgcgtcgatgctcagacaggactcatgggcaagactcttcttgagttccagtctaccaaaacagaaaacagtaatgctcttcctcttcctcctcacaagtttggcactcatgatgtggttgttctaagaccaaataaggctgatttgggctcacctgctcttggacaaggcgtagtttaccggttaaaggactcatcaatcacggttgcttttgatgacgttcctgaagacggattaaatagtcccctacggctagagaaactcacaaatgaagtgacatatcgtaggatgaaggacgccttgatacaattgagtaaaggtgtgcacaagggtcctgcttctgatttaattcctgtcttgtttggagagagggcaccaaccgtggctaagaaggaagtcacattctccccatttaacagaaaccttgatcactctcagaaagatgccatttcaaaggctctgtcatccaagaatgtatttttgctgcatgggcctcctggaacaggcaaaaccacaactgtggtggaaattatattgcaagaagtcaaacgtggatcaaagatccttgcatgtgctgcttccaatattgctgttgacaacattgttgagcgactggcacgccaaaggtatttcactgcctatataattttggaattcctcttctatcaaaatttgaaccctatcaaatataaggtgctaaatcagagcactatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

298

Amino Acids

32.58

Weight (kDa)

9.25

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 553
AccI GTMKAC 1 cut(s) 233
AccII CGCG 1 cut(s) 125
AciI CCGC 3 cut(s) 23, 120, 162
AclWI GGATC 2 cut(s) 736, 742
AcsI RAATTY 2 cut(s) 833, 850
AcuI CTGAAG 1 cut(s) 426
AcyI GRCGYC 1 cut(s) 477
AfiI CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 4 cut(s) 47, 178, 633, 856
AjnI CCWGG 2 cut(s) 128, 676
AleI CACNNNNGTG 1 cut(s) 698
Alw21I GWGCWC 2 cut(s) 507, 890
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 2 cut(s) 736, 742
AoxI GGCC 1 cut(s) 671
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 2 cut(s) 664, 755
ApoI RAATTY 2 cut(s) 833, 850
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AsiGI ACCGGT 1 cut(s) 360
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 512, 671
AsuHPI GGTGA 1 cut(s) 324
AvaII GGWCC 1 cut(s) 512
BaeGI GKGCMC 2 cut(s) 507, 556
BanI GGYRCC 1 cut(s) 553
BanII GRGCYC 2 cut(s) 161, 332
BbsI GAAGAC 2 cut(s) 20, 414
Bbv12I GWGCWC 2 cut(s) 507, 890
BbvI GCAGC 2 cut(s) 651, 742
BccI CCATC 3 cut(s) 44, 68, 119
BceAI ACGGC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 2 cut(s) 130, 678
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 607
BfaI CTAG 2 cut(s) 117, 434
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 4 cut(s) 23, 121, 665, 756
BlsI GCNGC 4 cut(s) 24, 122, 666, 757
Bme1390I CCNGG 2 cut(s) 130, 678
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 512, 671
BmiI GGNNCC 3 cut(s) 160, 513, 555
BmrFI CCNGG 2 cut(s) 130, 678
BmsI GCATC 2 cut(s) 178, 613
BpiI GAAGAC 2 cut(s) 20, 414
BpuEI CTTGAG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 229, 798
BseBI CCWGG 2 cut(s) 130, 678
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 3 cut(s) 10, 474, 644
BseLI CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
BseMII CTCAG 3 cut(s) 44, 206, 629
BseNI ACTGG 2 cut(s) 229, 798
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 2 cut(s) 507, 556
BseXI GCAGC 2 cut(s) 651, 742
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 673
BshNI GGYRCC 1 cut(s) 553
BshTI ACCGGT 1 cut(s) 360
BsiHKAI GWGCWC 2 cut(s) 507, 890
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 1 cut(s) 673
Bsp1286I GDGCHC 5 cut(s) 161, 332, 507, 556, 890
Bsp143I GATC 3 cut(s) 607, 734, 741
BspACI CCGC 3 cut(s) 23, 120, 162
BspANI GGCC 1 cut(s) 673
BspCNI CTCAG 3 cut(s) 43, 205, 628
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 160, 513, 555
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 2 cut(s) 736, 742
BspQI GCTCTTC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 553
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 2 cut(s) 229, 798
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 3 cut(s) 607, 734, 741
BssNI GRCGYC 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 130, 678
Bst4CI ACNGT 5 cut(s) 51, 251, 385, 562, 700
Bst6I CTCTTC 4 cut(s) 222, 264, 270, 845
BstACI GRCGYC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 5 cut(s) 30, 192, 305, 567, 615
BstDSI CCRYGG 1 cut(s) 561
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 3 cut(s) 10, 474, 644
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 3 cut(s) 610, 737, 744
BstMBI GATC 3 cut(s) 607, 734, 741
BstMWI GCNNNNNNNGC 2 cut(s) 670, 755
BstNI CCWGG 2 cut(s) 130, 678
BstNSI RCATGY 1 cut(s) 753
BstSCI CCNGG 2 cut(s) 128, 676
BstSLI GKGCMC 2 cut(s) 507, 556
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 651, 742
BstV2I GAAGAC 2 cut(s) 20, 414
BstX2I RGATCY 1 cut(s) 741
BstXI CCANNNNNNTGG 2 cut(s) 136, 700
BstYI RGATCY 1 cut(s) 741
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 673
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 3 cut(s) 10, 474, 644
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 1 cut(s) 813
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 799
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 512, 671
CseI GACGC 3 cut(s) 114, 172, 485
CspAI ACCGGT 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 4 cut(s) 205, 290, 668, 750
CviJI RGCY 9 cut(s) 22, 95, 159, 320, 330, 433, 566, 638, 673
CviKI_1 RGCY 9 cut(s) 22, 95, 159, 320, 330, 433, 566, 638, 673
DdeI CTNAG 5 cut(s) 30, 192, 305, 567, 615
DpnI GATC 3 cut(s) 609, 736, 743
DpnII GATC 3 cut(s) 607, 734, 741
Eam1104I CTCTTC 4 cut(s) 222, 264, 270, 845
EarI CTCTTC 4 cut(s) 222, 264, 270, 845
EciI GGCGGA 1 cut(s) 151
Eco24I GRGCYC 2 cut(s) 161, 332
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 128, 676
EcoRV GATATC 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 161, 332
FaeI CATG 4 cut(s) 208, 293, 671, 753
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 1 cut(s) 408
FatI CATG 4 cut(s) 204, 289, 667, 749
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 4 cut(s) 23, 121, 665, 756
FokI GGATG 3 cut(s) 17, 481, 631
FriOI GRGCYC 2 cut(s) 161, 332
Fsp4HI GCNGC 4 cut(s) 23, 121, 665, 756
FspBI CTAG 2 cut(s) 117, 434
GlaI GCGC 1 cut(s) 124
GluI GCNGC 4 cut(s) 23, 121, 665, 756
HaeIII GGCC 1 cut(s) 673
HapII CCGG 1 cut(s) 361
HgaI GACGC 3 cut(s) 114, 172, 485
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 4 cut(s) 208, 293, 671, 753
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 3 cut(s) 201, 214, 371
HpaII CCGG 1 cut(s) 361
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 4 cut(s) 234, 358, 505, 775
Hpy188I TCNGA 4 cut(s) 195, 523, 618, 885
Hpy188III TCNNGA 4 cut(s) 44, 221, 290, 404
Hpy8I GTNNAC 4 cut(s) 234, 358, 505, 775
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 148, 466, 565
HpyCH4III ACNGT 5 cut(s) 51, 251, 385, 562, 700
HpyCH4IV ACGT 2 cut(s) 399, 730
HpyCH4V TGCA 4 cut(s) 505, 667, 718, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 670, 755
HpyF3I CTNAG 5 cut(s) 30, 192, 305, 567, 615
HpySE526I ACGT 2 cut(s) 399, 730
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 4 cut(s) 208, 293, 671, 753
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 3 cut(s) 607, 734, 741
LguI GCTCTTC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 2 cut(s) 651, 742
LweI GCATC 2 cut(s) 178, 613
MaeI CTAG 2 cut(s) 117, 434
MaeII ACGT 2 cut(s) 399, 730
MaeIII GTNAC 2 cut(s) 454, 577
MalI GATC 3 cut(s) 609, 736, 743
MboI GATC 3 cut(s) 607, 734, 741
MboII GAAGA 6 cut(s) 25, 209, 251, 257, 419, 832
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 5 cut(s) 161, 332, 507, 556, 890
MluCI AATT 7 cut(s) 172, 488, 528, 708, 825, 833, 850
MlyI GAGTC 3 cut(s) 195, 208, 365
MnlI CCTC 8 cut(s) 81, 118, 273, 279, 282, 543, 684, 848
MseI TTAA 4 cut(s) 365, 416, 527, 594
MslI CAYNNNNRTG 1 cut(s) 698
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 2 cut(s) 130, 678
MunI CAATTG 1 cut(s) 488
MvaI CCWGG 2 cut(s) 130, 678
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 670, 755
NdeII GATC 3 cut(s) 607, 734, 741
NlaIII CATG 4 cut(s) 208, 293, 671, 753
NlaIV GGNNCC 3 cut(s) 160, 513, 555
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 454, 577
NspI RCATGY 1 cut(s) 753
OliI CACNNNNGTG 1 cut(s) 698
PagI TCATGA 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 264
PfoI TCCNGGA 2 cut(s) 128, 676
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 4 cut(s) 24, 122, 666, 757
PleI GAGTC 3 cut(s) 195, 208, 365
PpsI GAGTC 3 cut(s) 195, 208, 365
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 128, 676
PspGI CCWGG 2 cut(s) 128, 676
PspN4I GGNNCC 3 cut(s) 160, 513, 555
PspPI GGNCC 2 cut(s) 512, 671
PspPPI RGGWCCY 1 cut(s) 512
PsuI RGATCY 1 cut(s) 741
RseI CAYNNNNRTG 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 4 cut(s) 365, 416, 527, 594
SatI GCNGC 4 cut(s) 23, 121, 665, 756
Sau3AI GATC 3 cut(s) 607, 734, 741
Sau96I GGNCC 2 cut(s) 512, 671
SchI GAGTC 3 cut(s) 195, 208, 365
ScrFI CCNGG 2 cut(s) 130, 678
SduI GDGCHC 5 cut(s) 161, 332, 507, 556, 890
SetI ASST 7 cut(s) 337, 402, 502, 606, 733, 809, 876
SfaNI GCATC 2 cut(s) 178, 613
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 7 cut(s) 172, 488, 528, 708, 825, 833, 850
SsiI CCGC 3 cut(s) 23, 120, 162
SspI AATATT 1 cut(s) 766
SspMI CTAG 2 cut(s) 117, 434
StyD4I CCNGG 2 cut(s) 128, 676
TaaI ACNGT 5 cut(s) 51, 251, 385, 562, 700
TaiI ACGT 2 cut(s) 402, 733
TaqI TCGA 1 cut(s) 186
TasI AATT 7 cut(s) 172, 488, 528, 708, 825, 833, 850
TauI GCSGC 2 cut(s) 25, 123
Tru1I TTAA 4 cut(s) 365, 416, 527, 594
Tru9I TTAA 4 cut(s) 365, 416, 527, 594
TscAI CASTG 1 cut(s) 820
TseFI GTSAC 2 cut(s) 454, 577
TseI GCWGC 2 cut(s) 664, 755
Tsp45I GTSAC 2 cut(s) 454, 577
TspDTI ATGAA 3 cut(s) 43, 465, 485
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 1 cut(s) 820
VneI GTGCAC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 512
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 2 cut(s) 833, 850
XceI RCATGY 1 cut(s) 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 2 cut(s) 117, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.