Rorug03G0190500

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003053
Physical Location & Seq
Reverse (-)
16702370 .. 16706604
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0190500.1

Sequence Viewer

Length: 1020 bp
ATGAGCTTCTTGCCATCATCCGCCTGGTGGAGAAGCCATGTGAACTTGCGAACGCTGTACATGTTGTTCCTGGGTCAGCTCCTCTCCTTCTTTCTCGCACTCATGAGCTTCACTTCATCTCTCATAGCCAATCTCGGTGTGGATACGCCGATTACACAGACCTTGTCCACTTACTTGCTTTTGGCTTTGGTTTATGGAGGAATCTTGCTGCATAGGCGTGAGAAATTACGGGTTTCTTGGTATTGGTATCTTCTCTTGGGGTTTGTGGATGTTCAAGGGAACTATCTTGTAAATGAAGCATATCAGTTCTCATCAATAACTAGTGTGACATTATTGGACTGTTTCACAATCGCTTGGGTGCTAATTCTCACATGGATCTTCCTCGGCACTCGATATTCCATATGGCAATTGTTTGGTGCAGCCCTCTGTGTGGTTGGGCTTGGCATAGTGCTCCTCTCTGATGCAGGGGTAGCTGGTGGAGGTGGTTCACAACCTCTTCTTGGAGATGTCCTGGTCATAGCAGGAACAATTTTCTTTGCACTGAGCAATGTTGGTGAGGAGTTTTGTGTGAAGAAAAGAGATCGTATTGAAGTAGTATGCATGATTGGTGTGTTTGGATTTCTAGTGAGTGTGTGTCAGATATCCATTCTGGAATTAAAGAGTTTGGAATCAGTGGAGTGGTCTACAGATCTTATATTGGCCTTTGTTGGCTATGGATTGGCAGGCTTTATGCTGTACACACTTGGTCCATTCGTTCTTCAGATGAGTGGAGCCACATTGTTCAATCTCTCTATTCTCACATCTGATATGTGGGCTGTGGTTGTTCGCATCTTTATCTACCACCAGGAGGTAGACTGGTTATACTATTTATCATTTGCAATTGTAGTTATCGGACTCATCATTTATTCAGTAATGGAAAAGGAACCTGATCCTGTAACTTCACTTGAGGATGGAAACCCTAGCTACCAAATTCTTGAAGATGAAAGTGCTACATCTAGAAATGAGTCTTTGGCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

339

Amino Acids

37.7

Weight (kDa)

4.59

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLC35F PF06027 16 - 304 4.4e-95 Solute carrier family 35
EamA PF00892 23 - 151 2.4e-09 EamA-like transporter family
CRT-like PF08627 73 - 239 4e-09 CRT-like, chloroquine-resistance transporter-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 683, 852
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 383, 923
AcsI RAATTY 1 cut(s) 969
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 2 cut(s) 59, 737
AfiI CCNNNNNNNGG 4 cut(s) 27, 430, 500, 847
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 4 cut(s) 275, 590, 784, 977
AhlI ACTAGT 1 cut(s) 320
AjnI CCWGG 4 cut(s) 23, 69, 510, 843
AluBI AGCT 5 cut(s) 6, 79, 108, 473, 963
AluI AGCT 5 cut(s) 6, 79, 108, 473, 963
Alw21I GWGCWC 1 cut(s) 453
AlwI GGATC 2 cut(s) 383, 923
AoxI GGCC 2 cut(s) 699, 1011
ApeKI GCWGC 2 cut(s) 208, 419
ApoI RAATTY 1 cut(s) 969
AspS9I GGNCC 1 cut(s) 746
AsuHPI GGTGA 1 cut(s) 566
AvaII GGWCC 1 cut(s) 746
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 195, 431
BccI CCATC 2 cut(s) 22, 944
BciT130I CCWGG 4 cut(s) 25, 71, 512, 845
BciVI GTATCC 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 4 cut(s) 321, 623, 960, 996
BfmI CTRYAG 1 cut(s) 684
BfuI GTATCC 1 cut(s) 136
BglII AGATCT 1 cut(s) 688
BisI GCNGC 2 cut(s) 209, 420
BlsI GCNGC 2 cut(s) 210, 421
Bme1390I CCNGG 4 cut(s) 25, 71, 512, 845
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 2 cut(s) 772, 924
BmrFI CCNGG 4 cut(s) 25, 71, 512, 845
BmsI GCATC 2 cut(s) 451, 837
BpuEI CTTGAG 1 cut(s) 965
BsaJI CCNNGG 2 cut(s) 70, 382
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 430, 500, 847
Bse1I ACTGG 1 cut(s) 860
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 4 cut(s) 25, 71, 512, 845
BseDI CCNNGG 2 cut(s) 70, 382
BseGI GGATG 3 cut(s) 17, 274, 955
BseLI CCNNNNNNNGG 4 cut(s) 27, 430, 500, 847
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 1 cut(s) 860
BseRI GAGGAG 3 cut(s) 71, 443, 572
BseXI GCAGC 2 cut(s) 195, 431
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 2 cut(s) 701, 1013
BsiHKAI GWGCWC 1 cut(s) 453
BslI CCNNNNNNNGG 4 cut(s) 27, 430, 500, 847
BsnI GGCC 2 cut(s) 701, 1013
Bsp1286I GDGCHC 1 cut(s) 453
Bsp1407I TGTACA 2 cut(s) 57, 735
Bsp143I GATC 4 cut(s) 375, 580, 688, 928
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 701, 1013
BspCNI CTCAG 1 cut(s) 534
BspHI TCATGA 2 cut(s) 102, 1016
BspLI GGNNCC 2 cut(s) 772, 924
BspPI GGATC 2 cut(s) 383, 923
BsrDI GCAATG 1 cut(s) 553
BsrGI TGTACA 2 cut(s) 57, 735
BsrI ACTGG 1 cut(s) 860
BssECI CCNNGG 2 cut(s) 70, 382
BssMI GATC 4 cut(s) 375, 580, 688, 928
Bst2UI CCWGG 4 cut(s) 25, 71, 512, 845
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 501
BstAUI TGTACA 2 cut(s) 57, 735
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 1 cut(s) 542
BstF5I GGATG 3 cut(s) 17, 274, 955
BstKTI GATC 4 cut(s) 378, 583, 691, 931
BstMBI GATC 4 cut(s) 375, 580, 688, 928
BstMWI GCNNNNNNNGC 2 cut(s) 214, 470
BstNI CCWGG 4 cut(s) 25, 71, 512, 845
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 4 cut(s) 23, 69, 510, 843
BstSFI CTRYAG 1 cut(s) 684
BstV1I GCAGC 2 cut(s) 195, 431
BstX2I RGATCY 2 cut(s) 375, 688
BstYI RGATCY 2 cut(s) 375, 688
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 701, 1013
BtsCI GGATG 3 cut(s) 17, 274, 955
BtsIMutI CAGTG 2 cut(s) 539, 678
Cac8I GCNNGC 1 cut(s) 724
CciI TCATGA 2 cut(s) 102, 1016
Cfr13I GGNCC 1 cut(s) 746
Csp6I GTAC 2 cut(s) 58, 736
CviAII CATG 6 cut(s) 38, 61, 103, 372, 601, 1017
CviQI GTAC 2 cut(s) 58, 736
DdeI CTNAG 1 cut(s) 542
DpnI GATC 4 cut(s) 377, 582, 690, 930
DpnII GATC 4 cut(s) 375, 580, 688, 928
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EciI GGCGGA 1 cut(s) 10
Eco32I GATATC 1 cut(s) 642
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 743
EcoRII CCWGG 4 cut(s) 23, 69, 510, 843
EcoRV GATATC 1 cut(s) 642
EcoT22I ATGCAT 1 cut(s) 602
FaeI CATG 6 cut(s) 41, 64, 106, 375, 604, 1020
FatI CATG 6 cut(s) 37, 60, 102, 371, 600, 1016
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 2 cut(s) 683, 852
Fnu4HI GCNGC 2 cut(s) 209, 420
FokI GGATG 3 cut(s) 4, 281, 962
Fsp4HI GCNGC 2 cut(s) 209, 420
FspBI CTAG 4 cut(s) 321, 623, 960, 996
GluI GCNGC 2 cut(s) 209, 420
HaeIII GGCC 2 cut(s) 701, 1013
Hin1II CATG 6 cut(s) 41, 64, 106, 375, 604, 1020
HinfI GANTC 4 cut(s) 201, 668, 894, 1004
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 6 cut(s) 43, 168, 488, 684, 738, 853
Hpy188I TCNGA 5 cut(s) 460, 639, 762, 805, 893
Hpy188III TCNNGA 5 cut(s) 103, 650, 974, 996, 1017
Hpy8I GTNNAC 6 cut(s) 43, 168, 488, 684, 738, 853
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 6 cut(s) 211, 419, 464, 539, 600, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 470
HpyF3I CTNAG 1 cut(s) 542
Hsp92II CATG 6 cut(s) 41, 64, 106, 375, 604, 1020
Kzo9I GATC 4 cut(s) 375, 580, 688, 928
LmnI GCTCC 3 cut(s) 84, 456, 770
Lsp1109I GCAGC 2 cut(s) 195, 431
LweI GCATC 2 cut(s) 451, 837
MaeI CTAG 4 cut(s) 321, 623, 960, 996
MaeIII GTNAC 2 cut(s) 325, 934
MalI GATC 4 cut(s) 377, 582, 690, 930
MboI GATC 4 cut(s) 375, 580, 688, 928
MboII GAAGA 6 cut(s) 242, 370, 488, 583, 749, 989
MfeI CAATTG 2 cut(s) 407, 879
MflI RGATCY 2 cut(s) 375, 688
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 7 cut(s) 224, 363, 407, 528, 653, 879, 969
MlyI GAGTC 2 cut(s) 888, 1013
Mph1103I ATGCAT 1 cut(s) 602
MseI TTAA 1 cut(s) 656
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 4 cut(s) 25, 71, 512, 845
MunI CAATTG 2 cut(s) 407, 879
MvaI CCWGG 4 cut(s) 25, 71, 512, 845
MwoI GCNNNNNNNGC 2 cut(s) 214, 470
NdeI CATATG 1 cut(s) 401
NdeII GATC 4 cut(s) 375, 580, 688, 928
NlaIII CATG 6 cut(s) 41, 64, 106, 375, 604, 1020
NlaIV GGNNCC 2 cut(s) 772, 924
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 602
NspI RCATGY 1 cut(s) 64
PagI TCATGA 2 cut(s) 102, 1016
PciI ACATGT 1 cut(s) 60
PfeI GAWTC 2 cut(s) 201, 668
PflFI GACNNNGTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 210, 421
PleI GAGTC 2 cut(s) 888, 1012
PpsI GAGTC 2 cut(s) 888, 1012
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 4 cut(s) 23, 69, 510, 843
PspGI CCWGG 4 cut(s) 23, 69, 510, 843
PspN4I GGNNCC 2 cut(s) 772, 924
PspPI GGNCC 1 cut(s) 746
PsrI GAACNNNNNNTAC 2 cut(s) 50, 82
PsuI RGATCY 2 cut(s) 375, 688
PsyI GACNNNGTC 1 cut(s) 163
RsaI GTAC 2 cut(s) 59, 737
RsaNI GTAC 2 cut(s) 58, 736
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 1 cut(s) 656
SatI GCNGC 2 cut(s) 209, 420
Sau3AI GATC 4 cut(s) 375, 580, 688, 928
Sau96I GGNCC 1 cut(s) 746
SchI GAGTC 2 cut(s) 888, 1013
ScrFI CCNGG 4 cut(s) 25, 71, 512, 845
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 2 cut(s) 451, 837
SfcI CTRYAG 1 cut(s) 684
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 7 cut(s) 224, 363, 407, 528, 653, 879, 969
SsiI CCGC 1 cut(s) 21
SspMI CTAG 4 cut(s) 321, 623, 960, 996
StyD4I CCNGG 4 cut(s) 23, 69, 510, 843
TaaI ACNGT 1 cut(s) 341
TaqI TCGA 1 cut(s) 391
TasI AATT 7 cut(s) 224, 363, 407, 528, 653, 879, 969
TatI WGTACW 2 cut(s) 57, 735
TfiI GAWTC 2 cut(s) 201, 668
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TscAI CASTG 2 cut(s) 546, 678
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 208, 419
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 105, 309, 996
TspRI CASTG 2 cut(s) 546, 678
Tth111I GACNNNGTC 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 1 cut(s) 969
XbaI TCTAGA 1 cut(s) 995
XceI RCATGY 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 2 cut(s) 21, 136
XmiI GTMKAC 2 cut(s) 683, 852
XspI CTAG 4 cut(s) 321, 623, 960, 996
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.