Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377165.1

Orthogroup ID

OG0003053

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 529

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgaaggcattgaatggaaagctgttaagaaccaaagacaaaaacactaggagggaaatccagaaagagcttaggattctttccaaggaagagcgtaaaaggcagcagcttgctgtgacagatgtaataaaaaatgcagatgtggtgttgacaactttgactggagcatcgtctcgcaagctggaccacacatcatttgacttggtaattattgatgaagctgctcaggcacttgagatagcatgctggatagcactgctaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

88

Amino Acids

9.99

Weight (kDa)

9.66

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03270
fragaria_vesca	FvH4_6g23281 FvH4_6g23281 FvH4_6g23281 FvH4_6g23281 FvH4_6g23281
malus_domestica	MD12G1067500.v1.1 MD14G1067600.v1.1
prunus_persica	Prupe.7G066800_v2.0.a1 Prupe.7G066800_v2.0.a1
pyrus_communis	pycom12g05980 pycom14g05590
rosa_chinensis	RchiOBHm_Chr3g0481211 RchiOBHm_Chr3g0481241
rosa_laevigata	RLG00000023410 RLG00000023412
rosa_multiflora	Rmu_co8197524.1_g000001 Rmu_co8377165.1_g000001 Rmu_sc0000064.1_g000002 Rmu_sc0000064.1_g000004 Rmu_sc0000064.1_g000005 Rmu_sc0025114.1_g000001 Rmu_sc0031676.1_g000002 Rmu_sc0037191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003550 Rroxscaffold_6G00400580
rosa_rugosa	Rorug03G0190500 Rorug03G0190500 Rorug03G0190500
rosa_samantha	Rh2DG029300 Rh3AG241400 Rh3BG276800 Rh3CG272000 Rh3DG268400 Rh5AG477800
rosa_wichuraiana	Rw3G021540 Rw3G021560 Rw5G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	5 cut(s)	22, 70, 109, 181, 221
AluI	AGCT	5 cut(s)	22, 70, 109, 181, 221
Alw26I	GTCTC	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	103, 106, 221
AspS9I	GGNCC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	115, 118, 208
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	3 cut(s)	104, 107, 222
BlsI	GCNGC	3 cut(s)	105, 108, 223
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmsI	GCATC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	183
Bpu10I	CCTNAGC	2 cut(s)	71, 225
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	115, 118, 208
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	111, 179, 244
BstDEI	CTNAG	2 cut(s)	71, 225
BstMAI	GTCTC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 227
BstNSI	RCATGY	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	115, 118, 208
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	111, 179, 244
Cfr13I	GGNCC	1 cut(s)	184
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	5 cut(s)	22, 70, 109, 181, 221
CviKI_1	RGCY	5 cut(s)	22, 70, 109, 181, 221
DdeI	CTNAG	2 cut(s)	71, 225
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	246
FaiI	YATR	1 cut(s)	244
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	104, 107, 222
Fsp4HI	GCNGC	3 cut(s)	104, 107, 222
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	3 cut(s)	104, 107, 222
GsuI	CTGGAG	1 cut(s)	183
Hin1II	CATG	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 227
HpyF3I	CTNAG	2 cut(s)	71, 225
Hsp92II	CATG	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	74, 147, 167, 212, 232
Lsp1109I	GCAGC	3 cut(s)	115, 118, 208
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	101
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	100, 227
NlaIII	CATG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	105, 108, 223
PspPI	GGNCC	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	104, 107, 222
Sau96I	GGNCC	1 cut(s)	184
SetI	ASST	5 cut(s)	24, 72, 111, 183, 223
SfaNI	GCATC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	84
TasI	AATT	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	103, 106, 221
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	17, 231
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	184
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.