Rmu_sc0000064.1_g000005

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000064.1
OG0003053
Physical Location & Seq
Forward (+)
25668 .. 28193
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000064.1_g000005.1.cds

Sequence Viewer

Length: 1032 bp
atgaaggcattgaatggaaagctgttaagaaccaaagacaaaaacactaggagggaaatccagaaagagcttaggattctttccaaggaagagcgtaaaaggcagcagcttgctgtgacagatgtaataaaaaatgcagatgtggtgttgacaactttgactggggcatcgtctcgcaagctggaccacacatcatttgacttggtaattattgatgaagctgctcaggcacttgagatagcatgctggatagcactgctaaagggttcaagatgtatacttgcaggcgaccatcttcagcttcctccaaccatccagagtgctgaagctgagaagaaaggtttaggaagaaccctttttgaacgccttgcagacatatatggaaatgaagtggtatcgatgctgactgttcagtaccgcatgcatgagcgtatcatggattggtcgtcaaaggagctttacaatagtaaggttaaagcgcatccaagtgttgctgcacatatgcttttggatctcgaggatgtaaagaagacctcttcaacagaatcaacccttcttctaattgatatagctgggtgtgacatggaagaaaagaaggatgaagaggaaagcactatgaatgagggtgaagctgatgttgctattgcccatgcaaagagactcattcaaagcggtgtccaggcttctgaaattggaattatcaccccttatgctgcacaggttttcatactgaagaagttgaaaagcaatgaagaaaagctaaaggatttggaaatctcgacagtcgatggcttccagggccgggaaaaggaagccatcattatttcaatggttcgatcaaactcaaagaaagaggttgggtttctgagcgatcacaggcgaatgaacgtggctgtaacacgagcaagaaggcaatgttgtcttgtctgtgacactgagacagtgagtaatgatgcattcttgaagcgattgatagagtactttgaggagcatggtgagtatctaagtgcctcagagtatagtaatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

343

Amino Acids

38.63

Weight (kDa)

6.01

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AciI CCGC 2 cut(s) 418, 672
AclWI GGATC 1 cut(s) 519
AcuI CTGAAG 3 cut(s) 281, 345, 752
AfaI GTAC 2 cut(s) 416, 980
AfiI CCNNNNNNNGG 2 cut(s) 802, 808
AgsI TTSAA 8 cut(s) 13, 270, 362, 540, 668, 742, 828, 964
AjnI CCWGG 2 cut(s) 678, 795
Alw26I GTCTC 3 cut(s) 177, 652, 932
AlwI GGATC 1 cut(s) 519
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 1 cut(s) 799
ApeKI GCWGC 5 cut(s) 103, 106, 221, 494, 713
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 2 cut(s) 184, 799
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 3 cut(s) 638, 694, 1007
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 1 cut(s) 184
BauI CACGAG 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 536
BbvI GCAGC 5 cut(s) 115, 118, 208, 481, 700
BccI CCATC 4 cut(s) 300, 320, 782, 824
BciT130I CCWGG 2 cut(s) 680, 797
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 3 cut(s) 177, 652, 932
BfaI CTAG 1 cut(s) 48
BisI GCNGC 5 cut(s) 104, 107, 222, 495, 714
BlsI GCNGC 5 cut(s) 105, 108, 223, 496, 715
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 3 cut(s) 680, 797, 803
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 184, 799
BmrFI CCNGG 3 cut(s) 680, 797, 803
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 4 cut(s) 176, 390, 490, 943
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 536
Bpu10I CCTNAGC 2 cut(s) 71, 225
BpuEI CTTGAG 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 803
Bsa29I ATCGAT 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 84, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 802, 808
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 754, 920
BseBI CCWGG 2 cut(s) 680, 797
BseCI ATCGAT 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 84, 796
BseGI GGATG 4 cut(s) 312, 481, 526, 604
BseLI CCNNNNNNNGG 2 cut(s) 802, 808
BseMI GCAATG 2 cut(s) 754, 920
BseMII CTCAG 5 cut(s) 239, 321, 857, 927, 1026
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 1001
BseXI GCAGC 5 cut(s) 115, 118, 208, 481, 700
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 2 cut(s) 480, 699
BshFI GGCC 1 cut(s) 801
BshVI ATCGAT 1 cut(s) 398
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 1 cut(s) 802
BslI CCNNNNNNNGG 2 cut(s) 802, 808
BsmAI GTCTC 3 cut(s) 177, 652, 932
BsmBI CGTCTC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 956
BsnI GGCC 1 cut(s) 801
BsoBI CYCGRG 1 cut(s) 515
Bsp143I GATC 3 cut(s) 511, 836, 871
BspACI CCGC 2 cut(s) 418, 672
BspANI GGCC 1 cut(s) 801
BspCNI CTCAG 5 cut(s) 238, 322, 858, 928, 1025
BspDI ATCGAT 1 cut(s) 398
BspPI GGATC 1 cut(s) 519
BspQI GCTCTTC 1 cut(s) 84
BsrDI GCAATG 2 cut(s) 754, 920
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 84, 796
BssMI GATC 3 cut(s) 511, 836, 871
BssNAI GTATAC 1 cut(s) 278
BssSI CACGAG 1 cut(s) 900
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 900
Bst2UI CCWGG 2 cut(s) 680, 797
Bst4CI ACNGT 3 cut(s) 409, 784, 943
Bst6I CTCTTC 3 cut(s) 84, 541, 597
BstC8I GCNNGC 5 cut(s) 111, 179, 244, 286, 422
BstDEI CTNAG 7 cut(s) 71, 225, 330, 866, 936, 1004, 1012
BstF5I GGATG 4 cut(s) 312, 481, 526, 604
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 3 cut(s) 514, 839, 874
BstMAI GTCTC 3 cut(s) 177, 652, 932
BstMBI GATC 3 cut(s) 511, 836, 871
BstMWI GCNNNNNNNGC 4 cut(s) 100, 227, 638, 798
BstNI CCWGG 2 cut(s) 680, 797
BstNSI RCATGY 2 cut(s) 246, 424
BstSCI CCNGG 3 cut(s) 678, 795, 801
BstV1I GCAGC 5 cut(s) 115, 118, 208, 481, 700
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BstZ17I GTATAC 1 cut(s) 278
Bsu15I ATCGAT 1 cut(s) 398
BsuRI GGCC 1 cut(s) 801
BsuTUI ATCGAT 1 cut(s) 398
BtsCI GGATG 4 cut(s) 312, 481, 526, 604
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 3 cut(s) 254, 933, 948
Cac8I GCNNGC 5 cut(s) 111, 179, 244, 286, 422
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 2 cut(s) 184, 799
ClaI ATCGAT 1 cut(s) 398
Csp6I GTAC 2 cut(s) 415, 979
CviAII CATG 7 cut(s) 243, 421, 425, 436, 583, 650, 992
CviQI GTAC 2 cut(s) 415, 979
DdeI CTNAG 7 cut(s) 71, 225, 330, 866, 936, 1004, 1012
DpnI GATC 3 cut(s) 513, 838, 873
DpnII GATC 3 cut(s) 511, 836, 871
Eam1104I CTCTTC 3 cut(s) 84, 541, 597
EarI CTCTTC 3 cut(s) 84, 541, 597
Eco130I CCWWGG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 3 cut(s) 281, 345, 752
Eco88I CYCGRG 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 678, 795
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 2 cut(s) 426, 958
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 7 cut(s) 246, 424, 428, 439, 586, 653, 995
FatI CATG 7 cut(s) 242, 420, 424, 435, 582, 649, 991
FauNDI CATATG 1 cut(s) 501
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 5 cut(s) 104, 107, 222, 495, 714
FokI GGATG 4 cut(s) 299, 468, 533, 611
Fsp4HI GCNGC 5 cut(s) 104, 107, 222, 495, 714
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 480
GluI GCNGC 5 cut(s) 104, 107, 222, 495, 714
GsaI CCCAGC 1 cut(s) 576
HaeIII GGCC 1 cut(s) 801
HapII CCGG 1 cut(s) 802
HhaI GCGC 1 cut(s) 481
Hin1II CATG 7 cut(s) 246, 424, 428, 439, 586, 653, 995
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 3 cut(s) 76, 545, 660
HpaII CCGG 1 cut(s) 802
HphI GGTGA 3 cut(s) 638, 694, 1007
Hpy166II GTNNAC 2 cut(s) 150, 278
Hpy188I TCNGA 3 cut(s) 688, 867, 1015
Hpy188III TCNNGA 6 cut(s) 61, 270, 316, 515, 778, 961
Hpy8I GTNNAC 2 cut(s) 150, 278
HpyAV CCTTC 3 cut(s) 563, 589, 903
HpyCH4III ACNGT 3 cut(s) 409, 784, 943
HpyCH4IV ACGT 1 cut(s) 888
HpyCH4V TGCA 8 cut(s) 137, 284, 371, 424, 497, 653, 716, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 227, 638, 798
HpyF3I CTNAG 7 cut(s) 71, 225, 330, 866, 936, 1004, 1012
HpySE526I ACGT 1 cut(s) 888
Hsp92II CATG 7 cut(s) 246, 424, 428, 439, 586, 653, 995
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 3 cut(s) 511, 836, 871
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 454, 988
Lsp1109I GCAGC 5 cut(s) 115, 118, 208, 481, 700
LweI GCATC 4 cut(s) 176, 390, 490, 943
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 888
MaeIII GTNAC 4 cut(s) 115, 578, 895, 929
MalI GATC 3 cut(s) 513, 838, 873
MboI GATC 3 cut(s) 511, 836, 871
MflI RGATCY 1 cut(s) 511
MluCI AATT 4 cut(s) 207, 561, 690, 696
MlyI GAGTC 1 cut(s) 654
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 9 cut(s) 45, 315, 511, 544, 598, 616, 847, 979, 1021
Mph1103I ATGCAT 2 cut(s) 426, 958
MseI TTAA 2 cut(s) 26, 474
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 1 cut(s) 802
MspR9I CCNGG 3 cut(s) 680, 797, 803
Mva1269I GAATGC 1 cut(s) 956
MvaI CCWGG 2 cut(s) 680, 797
MwoI GCNNNNNNNGC 4 cut(s) 100, 227, 638, 798
NciI CCSGG 1 cut(s) 803
NdeI CATATG 1 cut(s) 501
NdeII GATC 3 cut(s) 511, 836, 871
NlaIII CATG 7 cut(s) 246, 424, 428, 439, 586, 653, 995
NmuCI GTSAC 3 cut(s) 115, 578, 929
NsiI ATGCAT 2 cut(s) 426, 958
NspI RCATGY 2 cut(s) 246, 424
PaeI GCATGC 2 cut(s) 246, 424
PaeR7I CTCGAG 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 956
PfeI GAWTC 2 cut(s) 76, 545
PkrI GCNGC 5 cut(s) 105, 108, 223, 496, 715
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Psp6I CCWGG 2 cut(s) 678, 795
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 678, 795
PspPI GGNCC 2 cut(s) 184, 799
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 2 cut(s) 416, 980
RsaNI GTAC 2 cut(s) 415, 979
RseI CAYNNNNRTG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 26, 474
SatI GCNGC 5 cut(s) 104, 107, 222, 495, 714
Sau3AI GATC 3 cut(s) 511, 836, 871
Sau96I GGNCC 2 cut(s) 184, 799
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 1 cut(s) 654
ScrFI CCNGG 3 cut(s) 680, 797, 803
SfaNI GCATC 4 cut(s) 176, 390, 490, 943
Sfr274I CTCGAG 1 cut(s) 515
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 233, 515
SmoI CTYRAG 2 cut(s) 233, 515
SphI GCATGC 2 cut(s) 246, 424
Sse9I AATT 4 cut(s) 207, 561, 690, 696
SsiI CCGC 2 cut(s) 418, 672
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 678, 795, 801
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 409, 784, 943
TaiI ACGT 1 cut(s) 891
TaqI TCGA 5 cut(s) 398, 516, 779, 786, 835
TasI AATT 4 cut(s) 207, 561, 690, 696
TatI WGTACW 1 cut(s) 978
TfiI GAWTC 2 cut(s) 76, 545
Tru1I TTAA 2 cut(s) 26, 474
Tru9I TTAA 2 cut(s) 26, 474
TscAI CASTG 3 cut(s) 261, 940, 948
TseFI GTSAC 3 cut(s) 115, 578, 929
TseI GCWGC 5 cut(s) 103, 106, 221, 494, 713
Tsp45I GTSAC 3 cut(s) 115, 578, 929
TspDTI ATGAA 8 cut(s) 17, 231, 402, 615, 632, 715, 765, 899
TspRI CASTG 3 cut(s) 261, 940, 948
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 2 cut(s) 246, 424
XhoI CTCGAG 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 1 cut(s) 48
ZrmI AGTACT 1 cut(s) 980
Zsp2I ATGCAT 2 cut(s) 426, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.