Rh3BG276800

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003053
Physical Location & Seq
Forward (+)
27099679 .. 27106663
6985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG276800.1

Sequence Viewer

Length: 1575 bp
ATGGATGGAGGGAAGACAAAGCCGCAATCCCAGTCCATCACTCTCGAACAGTTCATCTCCATCACTTCCCCTCTCATCGACTTGGAAAAGGAAGCCGAGATATCTGCCTCCATCACTAGCGGCGCGTCCAGGAACTTGGATACTGCTCAAAAGAAGGGCTCCGCCATTCTCAATTTGAAGTGCGTCGATGCTCAGACAGGACTCATGGGCAAGACTCTTCTTGAGTTCCAGTCTACCAAAACAGAAAACAGTAATGCTCTTCCTCTTCCTCCTCACAAGTTTGGCACTCATGATGTGGTTGTTCTAAGACCAAATAAGGCTGATTTGGGCTCACCTGCTCTTGGACAAGGCGTAGTTTACCGGTTAAAGGACTCATCAATCACGGTTGCTTTTGATGACGTTCCTGCAGACGGATTAAACAGTCCCCTACGGCTAGAGAAACTCACAAATGAAGTGACATATCGTAGGATGAAGGACGCCTTGATACAATTGAGTAAAGGTGTGCACAAGGGTCCTGCTTCTGATTTAATTCCTGTCTTGTTTGGAGAGAGGGCACCAACCGTGGCTAAGAAGGAAGTCACATTCTCCCCATTTAACAAAAACCTTGATCACTCTCAGAAAGATGCCATTTCAAAGGCTCTGTCATCCAAGAATGTATTTTTGCTGCATGGGCCTCCTGGAACAGGCAAAACCACAACTGTGGTGGAAATTATATTGCAAGAAGTTAAACGTGGATCAAAGATCCTTGCATGTGCTGCTTCTAATATTGCTGTTGACAACATTGTTGAGCGACTGGCACGCCAAAGAGTAAAGTTAGTGAGATTGGGACATCCTGCACGTTTACTACCTCAAGTACTGGAAAGTGCACTGGATGCACAGGTCTTGCGAGGAGATAACAGTGCTCTGGCGAATGACATTCGAAAGGAAATGAAGGCATTGAATGGAAAGCTGTTAAGAACCAAAGACAAAAACACTAGGAGGGAAATCCAGAAAGAGCTTAGGATTCTTTCCAAGGAAGAGCGTAAAAGGCAGCAGCTTGCTGTGACAGATGTAATAAAAAATGCAGATGTGGTGTTGGCAACTTTGACTGGGGCATCGTCTCGCAAGCTGGACCACACATCATTTGACATGGTAATTATTGATGAAGCTGCTCAGGCACTTGAGATAGCATGCTGGATAGCACTGCTAAAGGGTTCAAGATGTATACTTGCAGGCGACCATCTTCAGCTTCCTCCAACCATCCAGAGTGCTGAAGCTGAGAAGAAAGGTTTAGGAAGAACCCTTTTTGAACGCCTTGCGGACATATATGGAAATGAAGTGGTATCGATGCTGACTGTTCAGTACCGCATGCATGAGCGTATCATGGATTGGTCGTCAAAGGAGCTTTACAATAGTAAGGTTAAAGCGCATCCAAGTGTTGCTGCACATATGCTTTTGGATCTCGAGGATGTAAAGAAGACCTCTTCAACAGAATCAACCCTTCTTCTAATTGATATAGCTGGCAGGGTGGCAATTCGACTTCTTTTTTTTTTTTTTTTTTTACCCTCAAATAGTGCTGCATACAGACACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

524

Amino Acids

57.57

Weight (kDa)

9.41

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMUBP-2_HCS1_1B PF21138 25 - 134 3.4e-17 Helicase SMUBP-2/HCS1, 1B domain
AAA_11 PF13086 201 - 416 1.4e-66 AAA domain
AAA_30 PF13604 202 - 412 2.2e-09 AAA domain
AAA_19 PF13245 206 - 413 4.8e-11 AAA domain
AAA_12 PF13087 425 - 501 1.6e-13 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 553
AccI GTMKAC 2 cut(s) 233, 1204
AccII CGCG 1 cut(s) 125
AciI CCGC 5 cut(s) 23, 120, 162, 1298, 1345
AclWI GGATC 3 cut(s) 736, 742, 1446
AcuI CTGAAG 2 cut(s) 1208, 1272
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 2 cut(s) 855, 1343
AfiI CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 6 cut(s) 178, 633, 940, 1197, 1289, 1467
AjnI CCWGG 2 cut(s) 128, 676
AleI CACNNNNGTG 1 cut(s) 698
AluBI AGCT 9 cut(s) 949, 997, 1036, 1108, 1148, 1228, 1256, 1384, 1499
AluI AGCT 9 cut(s) 949, 997, 1036, 1108, 1148, 1228, 1256, 1384, 1499
Alw21I GWGCWC 3 cut(s) 507, 868, 904
Alw26I GTCTC 1 cut(s) 1104
Alw44I GTGCAC 2 cut(s) 503, 864
AlwI GGATC 3 cut(s) 736, 742, 1446
Ama87I CYCGRG 1 cut(s) 1442
AoxI GGCC 1 cut(s) 671
ApaLI GTGCAC 2 cut(s) 503, 864
ApeKI GCWGC 7 cut(s) 664, 755, 1030, 1033, 1148, 1421, 1556
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AsiGI ACCGGT 1 cut(s) 360
AspLEI GCGC 2 cut(s) 125, 1408
AspS9I GGNCC 3 cut(s) 512, 671, 1111
AsuHPI GGTGA 1 cut(s) 324
AsuII TTCGAA 1 cut(s) 919
AvaI CYCGRG 1 cut(s) 1442
AvaII GGWCC 2 cut(s) 512, 1111
BaeGI GKGCMC 3 cut(s) 507, 556, 868
BanI GGYRCC 1 cut(s) 553
BanII GRGCYC 2 cut(s) 161, 332
BbsI GAAGAC 2 cut(s) 20, 1463
Bbv12I GWGCWC 3 cut(s) 507, 868, 904
BbvI GCAGC 7 cut(s) 651, 742, 1042, 1045, 1135, 1408, 1543
BccI CCATC 5 cut(s) 44, 68, 119, 1227, 1247
BceAI ACGGC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 2 cut(s) 130, 678
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 1104
BfaI CTAG 3 cut(s) 117, 434, 975
BfmI CTRYAG 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 9 cut(s) 23, 121, 665, 756, 1031, 1034, 1149, 1422, 1557
BlsI GCNGC 9 cut(s) 24, 122, 666, 757, 1032, 1035, 1150, 1423, 1558
BmcAI AGTACT 1 cut(s) 855
Bme1390I CCNGG 2 cut(s) 130, 678
Bme18I GGWCC 2 cut(s) 512, 1111
BmeT110I CYCGRG 1 cut(s) 1442
BmgT120I GGNCC 3 cut(s) 512, 671, 1111
BmiI GGNNCC 3 cut(s) 160, 513, 555
BmrFI CCNGG 2 cut(s) 130, 678
BmrI ACTGGG 2 cut(s) 25, 1098
BmsI GCATC 6 cut(s) 178, 613, 862, 1103, 1317, 1417
BmuI ACTGGG 2 cut(s) 25, 1098
BpiI GAAGAC 2 cut(s) 20, 1463
Bpu10I CCTNAGC 2 cut(s) 998, 1152
Bpu14I TTCGAA 1 cut(s) 919
BpuEI CTTGAG 3 cut(s) 242, 834, 1181
Bsa29I ATCGAT 1 cut(s) 1325
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 561, 1011
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 6 cut(s) 31, 229, 798, 861, 873, 1093
BseBI CCWGG 2 cut(s) 130, 678
BseCI ATCGAT 1 cut(s) 1325
BseDI CCNNGG 2 cut(s) 561, 1011
BseGI GGATG 8 cut(s) 10, 474, 644, 829, 877, 1239, 1408, 1453
BseLI CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
BseMII CTCAG 4 cut(s) 206, 629, 1166, 1248
BseNI ACTGG 6 cut(s) 31, 229, 798, 861, 873, 1093
BseRI GAGGAG 2 cut(s) 261, 903
BseSI GKGCMC 3 cut(s) 507, 556, 868
BseXI GCAGC 7 cut(s) 651, 742, 1042, 1045, 1135, 1408, 1543
BsgI GTGCAG 2 cut(s) 819, 1407
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 673
BshNI GGYRCC 1 cut(s) 553
BshTI ACCGGT 1 cut(s) 360
BshVI ATCGAT 1 cut(s) 1325
BsiHKAI GWGCWC 3 cut(s) 507, 868, 904
BsiHKCI CYCGRG 1 cut(s) 1442
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 2 cut(s) 408, 840
BslI CCNNNNNNNGG 4 cut(s) 341, 367, 410, 683
BsmAI GTCTC 1 cut(s) 1104
BsmBI CGTCTC 1 cut(s) 1104
BsmFI GGGAC 2 cut(s) 408, 840
BsnI GGCC 1 cut(s) 673
BsoBI CYCGRG 1 cut(s) 1442
Bsp119I TTCGAA 1 cut(s) 919
Bsp1286I GDGCHC 6 cut(s) 161, 332, 507, 556, 868, 904
Bsp143I GATC 4 cut(s) 607, 734, 741, 1438
BspACI CCGC 5 cut(s) 23, 120, 162, 1298, 1345
BspANI GGCC 1 cut(s) 673
BspCNI CTCAG 4 cut(s) 205, 628, 1165, 1249
BspDI ATCGAT 1 cut(s) 1325
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 160, 513, 555
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 3 cut(s) 736, 742, 1446
BspQI GCTCTTC 2 cut(s) 264, 1011
BspT104I TTCGAA 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 553
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 6 cut(s) 31, 229, 798, 861, 873, 1093
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 561, 1011
BssMI GATC 4 cut(s) 607, 734, 741, 1438
BssNAI GTATAC 1 cut(s) 1205
BssNI GRCGYC 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 1011
Bst1107I GTATAC 1 cut(s) 1205
Bst2UI CCWGG 2 cut(s) 130, 678
Bst4CI ACNGT 8 cut(s) 51, 251, 385, 422, 562, 700, 899, 1336
Bst6I CTCTTC 5 cut(s) 222, 264, 270, 1011, 1468
BstACI GRCGYC 1 cut(s) 477
BstAPI GCANNNNNTGC 2 cut(s) 755, 872
BstBI TTCGAA 1 cut(s) 919
BstC8I GCNNGC 7 cut(s) 799, 1038, 1106, 1171, 1213, 1349, 1501
BstDEI CTNAG 7 cut(s) 192, 305, 567, 615, 998, 1152, 1257
BstDSI CCRYGG 1 cut(s) 561
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 8 cut(s) 10, 474, 644, 829, 877, 1239, 1408, 1453
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 2 cut(s) 125, 1408
BstKTI GATC 4 cut(s) 610, 737, 744, 1441
BstMAI GTCTC 1 cut(s) 1104
BstMBI GATC 4 cut(s) 607, 734, 741, 1438
BstMWI GCNNNNNNNGC 5 cut(s) 670, 755, 872, 1027, 1154
BstNI CCWGG 2 cut(s) 130, 678
BstNSI RCATGY 3 cut(s) 753, 1173, 1351
BstSCI CCNGG 2 cut(s) 128, 676
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 3 cut(s) 507, 556, 868
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 7 cut(s) 651, 742, 1042, 1045, 1135, 1408, 1543
BstV2I GAAGAC 2 cut(s) 20, 1463
BstX2I RGATCY 2 cut(s) 741, 1438
BstXI CCANNNNNNTGG 2 cut(s) 136, 700
BstYI RGATCY 2 cut(s) 741, 1438
BstZ17I GTATAC 1 cut(s) 1205
Bsu15I ATCGAT 1 cut(s) 1325
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 673
BsuTUI ATCGAT 1 cut(s) 1325
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 8 cut(s) 10, 474, 644, 829, 877, 1239, 1408, 1453
BtsI GCAGTG 1 cut(s) 1181
BtsIMutI CAGTG 3 cut(s) 866, 904, 1181
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 7 cut(s) 799, 1038, 1106, 1171, 1213, 1349, 1501
CciI TCATGA 1 cut(s) 289
CfoI GCGC 2 cut(s) 125, 1408
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 512, 671, 1111
ClaI ATCGAT 1 cut(s) 1325
CseI GACGC 3 cut(s) 114, 172, 485
Csp6I GTAC 2 cut(s) 854, 1342
CspAI ACCGGT 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 9 cut(s) 205, 290, 668, 750, 1129, 1170, 1348, 1352, 1363
CviQI GTAC 2 cut(s) 854, 1342
DdeI CTNAG 7 cut(s) 192, 305, 567, 615, 998, 1152, 1257
DpnI GATC 4 cut(s) 609, 736, 743, 1440
DpnII GATC 4 cut(s) 607, 734, 741, 1438
Eam1104I CTCTTC 5 cut(s) 222, 264, 270, 1011, 1468
EarI CTCTTC 5 cut(s) 222, 264, 270, 1011, 1468
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 1011
Eco24I GRGCYC 2 cut(s) 161, 332
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 512, 1111
Eco57I CTGAAG 2 cut(s) 1208, 1272
Eco88I CYCGRG 1 cut(s) 1442
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 128, 676
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 1011
EcoT22I ATGCAT 1 cut(s) 1353
EcoT38I GRGCYC 2 cut(s) 161, 332
ErhI CCWWGG 1 cut(s) 1011
Esp3I CGTCTC 1 cut(s) 1104
FaeI CATG 9 cut(s) 208, 293, 671, 753, 1132, 1173, 1351, 1355, 1366
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 2 cut(s) 408, 840
FatI CATG 9 cut(s) 204, 289, 667, 749, 1128, 1169, 1347, 1351, 1362
FauNDI CATATG 1 cut(s) 1428
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 2 cut(s) 233, 1204
Fnu4HI GCNGC 9 cut(s) 23, 121, 665, 756, 1031, 1034, 1149, 1422, 1557
FokI GGATG 8 cut(s) 17, 481, 631, 816, 884, 1226, 1395, 1460
FriOI GRGCYC 2 cut(s) 161, 332
Fsp4HI GCNGC 9 cut(s) 23, 121, 665, 756, 1031, 1034, 1149, 1422, 1557
FspBI CTAG 3 cut(s) 117, 434, 975
GlaI GCGC 2 cut(s) 124, 1407
GluI GCNGC 9 cut(s) 23, 121, 665, 756, 1031, 1034, 1149, 1422, 1557
HaeIII GGCC 1 cut(s) 673
HapII CCGG 1 cut(s) 361
HgaI GACGC 3 cut(s) 114, 172, 485
HhaI GCGC 2 cut(s) 125, 1408
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 9 cut(s) 208, 293, 671, 753, 1132, 1173, 1351, 1355, 1366
Hin6I GCGC 2 cut(s) 123, 1406
HinP1I GCGC 2 cut(s) 123, 1406
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 5 cut(s) 201, 214, 371, 1003, 1472
HpaII CCGG 1 cut(s) 361
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 7 cut(s) 234, 358, 505, 775, 842, 866, 1205
Hpy188I TCNGA 3 cut(s) 195, 523, 618
Hpy188III TCNNGA 7 cut(s) 44, 221, 290, 988, 1197, 1243, 1442
Hpy8I GTNNAC 7 cut(s) 234, 358, 505, 775, 842, 866, 1205
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 148, 466, 565, 925, 1490
HpyCH4III ACNGT 8 cut(s) 51, 251, 385, 422, 562, 700, 899, 1336
HpyCH4IV ACGT 3 cut(s) 399, 730, 838
HpyF10VI GCNNNNNNNGC 5 cut(s) 670, 755, 872, 1027, 1154
HpyF3I CTNAG 7 cut(s) 192, 305, 567, 615, 998, 1152, 1257
HpySE526I ACGT 3 cut(s) 399, 730, 838
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 9 cut(s) 208, 293, 671, 753, 1132, 1173, 1351, 1355, 1366
HspAI GCGC 2 cut(s) 123, 1406
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 4 cut(s) 607, 734, 741, 1438
LguI GCTCTTC 2 cut(s) 264, 1011
LmnI GCTCC 2 cut(s) 164, 1381
Lsp1109I GCAGC 7 cut(s) 651, 742, 1042, 1045, 1135, 1408, 1543
LweI GCATC 6 cut(s) 178, 613, 862, 1103, 1317, 1417
MaeI CTAG 3 cut(s) 117, 434, 975
MaeII ACGT 3 cut(s) 399, 730, 838
MaeIII GTNAC 3 cut(s) 454, 577, 1042
MalI GATC 4 cut(s) 609, 736, 743, 1440
MboI GATC 4 cut(s) 607, 734, 741, 1438
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 2 cut(s) 741, 1438
MhlI GDGCHC 6 cut(s) 161, 332, 507, 556, 868, 904
MluCI AATT 7 cut(s) 172, 488, 528, 708, 1134, 1488, 1512
MlyI GAGTC 3 cut(s) 195, 208, 365
MmeI TCCRAC 1 cut(s) 1259
Mph1103I ATGCAT 1 cut(s) 1353
MseI TTAA 7 cut(s) 365, 416, 527, 594, 726, 953, 1401
MslI CAYNNNNRTG 2 cut(s) 698, 1413
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 2 cut(s) 130, 678
MunI CAATTG 1 cut(s) 488
MvaI CCWGG 2 cut(s) 130, 678
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 5 cut(s) 670, 755, 872, 1027, 1154
NdeI CATATG 1 cut(s) 1428
NdeII GATC 4 cut(s) 607, 734, 741, 1438
NlaIII CATG 9 cut(s) 208, 293, 671, 753, 1132, 1173, 1351, 1355, 1366
NlaIV GGNNCC 3 cut(s) 160, 513, 555
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 454, 577, 1042
NsiI ATGCAT 1 cut(s) 1353
NspI RCATGY 3 cut(s) 753, 1173, 1351
NspV TTCGAA 1 cut(s) 919
OliI CACNNNNGTG 1 cut(s) 698
PaeI GCATGC 2 cut(s) 1173, 1351
PaeR7I CTCGAG 1 cut(s) 1442
PagI TCATGA 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 343
PciSI GCTCTTC 2 cut(s) 264, 1011
PfeI GAWTC 2 cut(s) 1003, 1472
PfoI TCCNGGA 2 cut(s) 128, 676
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 9 cut(s) 24, 122, 666, 757, 1032, 1035, 1150, 1423, 1558
PleI GAGTC 3 cut(s) 195, 208, 365
PpsI GAGTC 3 cut(s) 195, 208, 365
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 128, 676
PspGI CCWGG 2 cut(s) 128, 676
PspN4I GGNNCC 3 cut(s) 160, 513, 555
PspPI GGNCC 3 cut(s) 512, 671, 1111
PspPPI RGGWCCY 1 cut(s) 512
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 2 cut(s) 741, 1438
RsaI GTAC 2 cut(s) 855, 1343
RsaNI GTAC 2 cut(s) 854, 1342
RseI CAYNNNNRTG 2 cut(s) 698, 1413
SapI GCTCTTC 2 cut(s) 264, 1011
SaqAI TTAA 7 cut(s) 365, 416, 527, 594, 726, 953, 1401
SatI GCNGC 9 cut(s) 23, 121, 665, 756, 1031, 1034, 1149, 1422, 1557
Sau3AI GATC 4 cut(s) 607, 734, 741, 1438
Sau96I GGNCC 3 cut(s) 512, 671, 1111
ScaI AGTACT 1 cut(s) 855
SchI GAGTC 3 cut(s) 195, 208, 365
ScrFI CCNGG 2 cut(s) 130, 678
SduI GDGCHC 6 cut(s) 161, 332, 507, 556, 868, 904
SfaNI GCATC 6 cut(s) 178, 613, 862, 1103, 1317, 1417
SfcI CTRYAG 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 1442
SfuI TTCGAA 1 cut(s) 919
SinI GGWCC 2 cut(s) 512, 1111
SlaI CTCGAG 1 cut(s) 1442
SmiMI CAYNNNNRTG 2 cut(s) 698, 1413
SmlI CTYRAG 4 cut(s) 221, 849, 1160, 1442
SmoI CTYRAG 4 cut(s) 221, 849, 1160, 1442
SphI GCATGC 2 cut(s) 1173, 1351
Sse9I AATT 7 cut(s) 172, 488, 528, 708, 1134, 1488, 1512
SsiI CCGC 5 cut(s) 23, 120, 162, 1298, 1345
SspI AATATT 1 cut(s) 766
SspMI CTAG 3 cut(s) 117, 434, 975
StyD4I CCNGG 2 cut(s) 128, 676
StyI CCWWGG 1 cut(s) 1011
TaaI ACNGT 8 cut(s) 51, 251, 385, 422, 562, 700, 899, 1336
TaiI ACGT 3 cut(s) 402, 733, 841
TaqI TCGA 7 cut(s) 45, 78, 186, 919, 1325, 1443, 1516
TasI AATT 7 cut(s) 172, 488, 528, 708, 1134, 1488, 1512
TatI WGTACW 1 cut(s) 853
TauI GCSGC 2 cut(s) 25, 123
TfiI GAWTC 2 cut(s) 1003, 1472
Tru1I TTAA 7 cut(s) 365, 416, 527, 594, 726, 953, 1401
Tru9I TTAA 7 cut(s) 365, 416, 527, 594, 726, 953, 1401
TscAI CASTG 3 cut(s) 873, 904, 1188
TseFI GTSAC 3 cut(s) 454, 577, 1042
TseI GCWGC 7 cut(s) 664, 755, 1030, 1033, 1148, 1421, 1556
Tsp45I GTSAC 3 cut(s) 454, 577, 1042
TspDTI ATGAA 6 cut(s) 43, 465, 485, 944, 1158, 1329
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 3 cut(s) 873, 904, 1188
VneI GTGCAC 2 cut(s) 503, 864
VpaK11BI GGWCC 2 cut(s) 512, 1111
XagI CCTNNNNNAGG 1 cut(s) 681
XceI RCATGY 3 cut(s) 753, 1173, 1351
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 1442
XmiI GTMKAC 2 cut(s) 233, 1204
XspI CTAG 3 cut(s) 117, 434, 975
ZrmI AGTACT 1 cut(s) 855
Zsp2I ATGCAT 1 cut(s) 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.