Rroxscaffold_1G00003550

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003053
Physical Location & Seq
Forward (+)
4360142 .. 4368185
8044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003550.1

Sequence Viewer

Length: 822 bp
ATGCCTATGTCATGGTGTGACATGGAAGAAAAGAAGGATGAAGAGGAAAGCACCATGAATGAGGTTGAAGCTGATGTTGCTATTGCCCATGCAAAGAGACTCATTCAAAGTGGTGTCCAGGCTTCTGATATTGGAATTATCACCCCTTATGCTGCACAGGTTTTCATACTGAAGAAGTTGAAAAGAAATGAAGAAAAGCTAAAGGATTTGAAAATCTCAACAGTCCATGGCTTCCAGGGCTTGGTGAAGGAAGCCATAATTATTTCAATGGTTCGATCAAACTCAAAGAAAGAGGTTGGGTTTCTGAGCGATCACATGCGAATGTACGTGGCTGTAACACGAGCAAGAAGGCAATGTTGGCTTGTCTGTGACACTGAGACATTGAGTAATGATGCATTCTTGAAGCGATCGATAGAGTACTTTGAGGAGCATGCTGAACCATCATCAGCAGCTGGTCTGTGGATAGATGCTTTAAGAAAACTGGACAGTTTTCCAGGGTGGCATAGCCAGGATTATAAGACTGAGATAGATCTTCTCGAAGCCATTGTGGAACCTGTATGCAGTAAACCACTACAACCTCTTGTGGTATCCCAGAGCCCTGACTTGACAAAAATTCAAGGCACATTGGCGGGGCCGAGCGGGTGTTGTACTAAGCCTAAGCTTACCGTCACTAATTGGAAAAAGCGTGATCTTCTCGGCAGCGGCTATTTCGGGTCTGTGTATGAAGGAATTACTGATGGCGGAAGCTTCTTTGCTGTCAAGCAAGTTTCCTTGCTTGATCAAGAAAAGTTTCTAGACTTGAACAGGAGATTGCTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

273

Amino Acids

30.7

Weight (kDa)

6.02

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 5 - 125 2e-37 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AccB7I CCANNNNNTGG 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 639
AciI CCGC 4 cut(s) 629, 639, 702, 741
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 3 cut(s) 326, 419, 649
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 8 cut(s) 68, 107, 181, 211, 267, 403, 617, 802
AjnI CCWGG 4 cut(s) 117, 234, 493, 507
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AluBI AGCT 5 cut(s) 71, 199, 452, 661, 747
AluI AGCT 5 cut(s) 71, 199, 452, 661, 747
Alw26I GTCTC 2 cut(s) 91, 371
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 3 cut(s) 152, 449, 699
ApoI RAATTY 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 789
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 2 cut(s) 133, 256
BanII GRGCYC 1 cut(s) 599
BauI CACGAG 1 cut(s) 339
BbvI GCAGC 3 cut(s) 139, 461, 711
BccI CCATC 2 cut(s) 448, 731
BciT130I CCWGG 4 cut(s) 119, 236, 495, 509
BciVI GTATCC 1 cut(s) 598
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 2 cut(s) 91, 371
BfaI CTAG 1 cut(s) 794
BfuI GTATCC 1 cut(s) 598
BglII AGATCT 1 cut(s) 529
BisI GCNGC 4 cut(s) 153, 450, 700, 703
BlsI GCNGC 4 cut(s) 154, 451, 701, 704
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 4 cut(s) 119, 236, 495, 509
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 2 cut(s) 552, 633
BmrFI CCNGG 4 cut(s) 119, 236, 495, 509
BmsI GCATC 2 cut(s) 382, 457
Bpu10I CCTNAGC 1 cut(s) 657
Bsa29I ATCGAT 1 cut(s) 410
BsaAI YACGTR 1 cut(s) 328
BsaJI CCNNGG 3 cut(s) 226, 235, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 4 cut(s) 119, 236, 495, 509
BseCI ATCGAT 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 226, 235, 494
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 3 cut(s) 296, 366, 513
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 139, 461, 711
BsgI GTGCAG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 634
BshVI ATCGAT 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 2 cut(s) 91, 371
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 6 cut(s) 275, 310, 407, 529, 688, 778
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 4 cut(s) 629, 639, 702, 741
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 3 cut(s) 297, 367, 514
BspDI ATCGAT 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 552, 633
BsrBI CCGCTC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 1 cut(s) 486
BssECI CCNNGG 3 cut(s) 226, 235, 494
BssMI GATC 6 cut(s) 275, 310, 407, 529, 688, 778
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 4 cut(s) 119, 236, 495, 509
Bst4CI ACNGT 3 cut(s) 223, 488, 667
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 5 cut(s) 305, 375, 522, 651, 657
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 6 cut(s) 278, 313, 410, 532, 691, 781
BstMAI GTCTC 2 cut(s) 91, 371
BstMBI GATC 6 cut(s) 275, 310, 407, 529, 688, 778
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 3 cut(s) 77, 237, 358
BstNI CCWGG 4 cut(s) 119, 236, 495, 509
BstNSI RCATGY 2 cut(s) 319, 434
BstSCI CCNGG 4 cut(s) 117, 234, 493, 507
BstV1I GCAGC 3 cut(s) 139, 461, 711
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 410
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 1 cut(s) 634
BsuTUI ATCGAT 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 632
ClaI ATCGAT 1 cut(s) 410
Csp6I GTAC 3 cut(s) 325, 418, 648
CviAII CATG 7 cut(s) 12, 22, 55, 89, 227, 316, 431
CviQI GTAC 3 cut(s) 325, 418, 648
DdeI CTNAG 5 cut(s) 305, 375, 522, 651, 657
DpnI GATC 6 cut(s) 277, 312, 409, 531, 690, 780
DpnII GATC 6 cut(s) 275, 310, 407, 529, 688, 778
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 1 cut(s) 756
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 191
EcoRII CCWGG 4 cut(s) 117, 234, 493, 507
EcoT14I CCWWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 599
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 7 cut(s) 15, 25, 58, 92, 230, 319, 434
FatI CATG 7 cut(s) 11, 21, 54, 88, 226, 315, 430
FauI CCCGC 2 cut(s) 622, 632
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 4 cut(s) 153, 450, 700, 703
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 599
Fsp4HI GCNGC 4 cut(s) 153, 450, 700, 703
FspBI CTAG 1 cut(s) 794
GluI GCNGC 4 cut(s) 153, 450, 700, 703
HaeIII GGCC 1 cut(s) 634
Hin1II CATG 7 cut(s) 15, 25, 58, 92, 230, 319, 434
HindIII AAGCTT 2 cut(s) 659, 745
HinfI GANTC 1 cut(s) 99
HphI GGTGA 2 cut(s) 133, 256
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 3 cut(s) 127, 306, 821
Hpy188III TCNNGA 4 cut(s) 400, 536, 782, 794
Hpy8I GTNNAC 1 cut(s) 566
HpyAV CCTTC 4 cut(s) 28, 241, 342, 719
HpyCH4III ACNGT 3 cut(s) 223, 488, 667
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 92, 155, 395, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 237, 358
HpyF3I CTNAG 5 cut(s) 305, 375, 522, 651, 657
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 7 cut(s) 15, 25, 58, 92, 230, 319, 434
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 6 cut(s) 275, 310, 407, 529, 688, 778
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 3 cut(s) 139, 461, 711
LweI GCATC 2 cut(s) 382, 457
MaeI CTAG 1 cut(s) 794
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 4 cut(s) 17, 334, 368, 667
MalI GATC 6 cut(s) 277, 312, 409, 531, 690, 780
MbiI CCGCTC 1 cut(s) 639
MboI GATC 6 cut(s) 275, 310, 407, 529, 688, 778
MboII GAAGA 7 cut(s) 38, 53, 184, 203, 524, 683, 808
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 5 cut(s) 135, 258, 612, 673, 729
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 5 cut(s) 37, 55, 286, 418, 588
Mph1103I ATGCAT 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 2 cut(s) 452, 702
MspR9I CCNGG 4 cut(s) 119, 236, 495, 509
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 4 cut(s) 119, 236, 495, 509
MwoI GCNNNNNNNGC 3 cut(s) 77, 237, 358
NcoI CCATGG 1 cut(s) 226
NdeII GATC 6 cut(s) 275, 310, 407, 529, 688, 778
NlaIII CATG 7 cut(s) 15, 25, 58, 92, 230, 319, 434
NlaIV GGNNCC 2 cut(s) 552, 633
NmeAIII GCCGAG 2 cut(s) 660, 675
NmuCI GTSAC 3 cut(s) 17, 368, 667
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 2 cut(s) 319, 434
PaeI GCATGC 1 cut(s) 434
PctI GAATGC 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 789
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 4 cut(s) 154, 451, 701, 704
Ple19I CGATCG 1 cut(s) 410
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 328
PsiI TTATAA 1 cut(s) 516
Psp6I CCWGG 4 cut(s) 117, 234, 493, 507
PspGI CCWGG 4 cut(s) 117, 234, 493, 507
PspN4I GGNNCC 2 cut(s) 552, 633
PspPI GGNCC 1 cut(s) 632
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 529
PvuI CGATCG 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 326, 419, 649
RsaNI GTAC 3 cut(s) 325, 418, 648
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 4 cut(s) 153, 450, 700, 703
Sau3AI GATC 6 cut(s) 275, 310, 407, 529, 688, 778
Sau96I GGNCC 1 cut(s) 632
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 4 cut(s) 119, 236, 495, 509
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 2 cut(s) 382, 457
SmiMI CAYNNNNRTG 1 cut(s) 320
SphI GCATGC 1 cut(s) 434
Sse9I AATT 5 cut(s) 135, 258, 612, 673, 729
SsiI CCGC 4 cut(s) 629, 639, 702, 741
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 4 cut(s) 117, 234, 493, 507
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 3 cut(s) 223, 488, 667
TaiI ACGT 1 cut(s) 330
TaqI TCGA 3 cut(s) 274, 410, 537
TasI AATT 5 cut(s) 135, 258, 612, 673, 729
TatI WGTACW 2 cut(s) 417, 647
TauI GCSGC 1 cut(s) 705
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 3 cut(s) 17, 368, 667
TseI GCWGC 3 cut(s) 152, 449, 699
Tsp45I GTSAC 3 cut(s) 17, 368, 667
TspDTI ATGAA 5 cut(s) 54, 71, 154, 204, 738
TspRI CASTG 1 cut(s) 379
Van91I CCANNNNNTGG 1 cut(s) 241
XapI RAATTY 1 cut(s) 612
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 2 cut(s) 319, 434
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 1 cut(s) 794
ZrmI AGTACT 1 cut(s) 419
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.