Rh5AG477800

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003053
Physical Location & Seq
Reverse (-)
82138280 .. 82144443
6164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG477800.1

Sequence Viewer

Length: 540 bp
ATGGTGGACGGAGGAATCATAGCTTTAATTCGTATCCTCAGATTGTGTACAATTGAAGACAGCTATTCTGGAAACACTTGGATTGGGTATGATCATGTACAAAGTACATATACCAAAGGTTCATATATATGCAAAAGGGAATTCAGGGTCTACTTGGCTACGCTGCATGGGTCATTTCCGTCGATTCCAATTGGACACTTTCACAAACAGTTTTGTTTGCAGTTTCTCGTTTTCATACTGAAGAAGTTGAAAAGCAATGAAGAAAAGCTAAAGGATTTGGAAATCTCAACAGTCGATGGCTTCCAGGGCCGGGAAAAGGAAGCCATCATTATTTCAATGGTTCGATCAAACTCAAAGAAAGAGGTTGGGTTTCTGAGCGATCAAAGGCGAATGAACATGGCTGTAACACGAGCAACAAGGCAATGTTGTCTTGTCTGTGACACTGAGACAGTGAGTAATGATGCATTCTTGAAGCGATTGATAGAGTACTTTGAGGAGCATGGTGAGTATCTAAGTGCATCAGAGTATAGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

179

Amino Acids

20.6

Weight (kDa)

6.95

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 79 - 148 1.4e-26 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 4 cut(s) 49, 99, 106, 488
AfiI CCNNNNNNNGG 2 cut(s) 310, 316
AgsI TTSAA 4 cut(s) 56, 250, 336, 472
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 23, 63, 268
AluI AGCT 3 cut(s) 23, 63, 268
Alw26I GTCTC 1 cut(s) 440
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 515
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 150
BccI CCATC 2 cut(s) 290, 332
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 1 cut(s) 44
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 440
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 488
Bme1390I CCNGG 2 cut(s) 305, 311
BmgT120I GGNCC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 305, 311
BmsI GCATC 2 cut(s) 451, 527
BpiI GAAGAC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 316
Bse3DI GCAATG 2 cut(s) 262, 428
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 310, 316
BseMI GCAATG 2 cut(s) 262, 428
BseMII CTCAG 3 cut(s) 52, 365, 435
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 150
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 310, 316
BsmAI GTCTC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 1 cut(s) 309
Bsp1407I TGTACA 2 cut(s) 47, 97
Bsp143I GATC 3 cut(s) 91, 344, 379
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 3 cut(s) 51, 366, 436
BsrDI GCAATG 2 cut(s) 262, 428
BsrGI TGTACA 2 cut(s) 47, 97
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 3 cut(s) 91, 344, 379
BssSI CACGAG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 210, 292, 451
BstAUI TGTACA 2 cut(s) 47, 97
BstDEI CTNAG 4 cut(s) 38, 374, 444, 512
BstKTI GATC 3 cut(s) 94, 347, 382
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 3 cut(s) 91, 344, 379
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 303, 309
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 441, 456
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 4 cut(s) 48, 98, 105, 487
CviAII CATG 4 cut(s) 95, 167, 397, 500
CviJI RGCY 8 cut(s) 23, 63, 158, 268, 300, 309, 323, 401
CviKI_1 RGCY 8 cut(s) 23, 63, 158, 268, 300, 309, 323, 401
CviQI GTAC 4 cut(s) 48, 98, 105, 487
DdeI CTNAG 4 cut(s) 38, 374, 444, 512
DpnI GATC 3 cut(s) 93, 346, 381
DpnII GATC 3 cut(s) 91, 344, 379
Eco57I CTGAAG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 466
FaeI CATG 4 cut(s) 98, 170, 400, 503
FatI CATG 4 cut(s) 94, 166, 396, 499
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 310
Hin1II CATG 4 cut(s) 98, 170, 400, 503
HinfI GANTC 2 cut(s) 15, 184
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 3 cut(s) 7, 48, 151
Hpy188I TCNGA 3 cut(s) 41, 375, 523
Hpy188III TCNNGA 2 cut(s) 69, 469
Hpy8I GTNNAC 3 cut(s) 7, 48, 151
Hpy99I CGWCG 1 cut(s) 184
HpyCH4III ACNGT 3 cut(s) 210, 292, 451
HpyCH4V TGCA 5 cut(s) 132, 166, 220, 464, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 4 cut(s) 38, 374, 444, 512
Hsp92II CATG 4 cut(s) 98, 170, 400, 503
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 91, 344, 379
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 5 cut(s) 54, 130, 290, 317, 323
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 2 cut(s) 451, 527
MaeIII GTNAC 2 cut(s) 403, 437
MalI GATC 3 cut(s) 93, 346, 381
MboI GATC 3 cut(s) 91, 344, 379
MboII GAAGA 3 cut(s) 68, 253, 272
MfeI CAATTG 2 cut(s) 51, 189
MluCI AATT 4 cut(s) 27, 51, 140, 189
MnlI CCTC 4 cut(s) 5, 47, 355, 487
Mph1103I ATGCAT 1 cut(s) 466
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 127
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 2 cut(s) 305, 311
MunI CAATTG 2 cut(s) 51, 189
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 311
NdeII GATC 3 cut(s) 91, 344, 379
NlaIII CATG 4 cut(s) 98, 170, 400, 503
NmuCI GTSAC 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 466
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 15, 184
PkrI GCNGC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspPI GGNCC 1 cut(s) 307
RsaI GTAC 4 cut(s) 49, 99, 106, 488
RsaNI GTAC 4 cut(s) 48, 98, 105, 487
RseI CAYNNNNRTG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 91, 344, 379
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 488
ScrFI CCNGG 2 cut(s) 305, 311
SetI ASST 5 cut(s) 25, 65, 121, 270, 366
SfaNI GCATC 2 cut(s) 451, 527
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 4 cut(s) 27, 51, 140, 189
StyD4I CCNGG 2 cut(s) 303, 309
TaaI ACNGT 3 cut(s) 210, 292, 451
TaqI TCGA 3 cut(s) 182, 294, 343
TasI AATT 4 cut(s) 27, 51, 140, 189
TatI WGTACW 4 cut(s) 47, 97, 104, 486
TfiI GAWTC 2 cut(s) 15, 184
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 448, 456
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 4 cut(s) 111, 223, 273, 407
TspGWI ACGGA 2 cut(s) 24, 168
TspRI CASTG 2 cut(s) 448, 456
XapI RAATTY 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 488
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.