Rmu_sc0037191.1_g000001

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037191.1
OG0003053
Physical Location & Seq
Forward (+)
1 .. 1615
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037191.1_g000001.1.cds

Sequence Viewer

Length: 746 bp
gcgaccatcttcagcttcctccaaccatccagagtgctgaagctgagaagaaaggtttaggaagaaccctttttgaacgccttgcagacatatatggaaatgaagtggtatcgatgctgactgttcagtaccgcatgcatgagcgtatcatggattggtcgtcaaaggagctttacaatagtaaggttaaagcgcatccaagtgttgctgcacatatgcttttggatctcgaggatgtaaagaagacctcttcaacagaatcaacccttcttctaattgatatagctgggtgtgacatggaagaaaagaaggatgaagaggaaagcactatgaatgagggtgaagctgatgttgctattgcccatgcaaagagactcattcaaagcggtgtccaggcttctgaaattggaattatcaccccttatgctgcacaggttttcatactgaagaagttgaaaagcaatgaagaaaagctaaaggatttggaaatctcgacagtcgatggcttccagggccgggaaaaggaagccatcattatttcaatggttcgatcaaactcaaagaaagaggttgggtttctgagcgatcacaggcgaatgaacgtggctgtaacacgagcaagaaggcaatgttgtcttgtctgtgacactgagacagtgagtaatgatgcattcttgaagcgattgatagagtactttgaggagcatggtgagtatctaagtgcctcagagtatagtaatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

247

Amino Acids

27.91

Weight (kDa)

5.24

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 132, 386
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 59, 466
AfaI GTAC 2 cut(s) 130, 694
AfiI CCNNNNNNNGG 2 cut(s) 516, 522
AgsI TTSAA 6 cut(s) 76, 254, 382, 456, 542, 678
AjnI CCWGG 2 cut(s) 392, 509
AluBI AGCT 6 cut(s) 15, 43, 171, 286, 346, 474
AluI AGCT 6 cut(s) 15, 43, 171, 286, 346, 474
Alw26I GTCTC 2 cut(s) 366, 646
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 2 cut(s) 208, 427
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 513
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 3 cut(s) 352, 408, 721
AvaI CYCGRG 1 cut(s) 229
BauI CACGAG 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 195, 414
BccI CCATC 4 cut(s) 14, 34, 496, 538
BciT130I CCWGG 2 cut(s) 394, 511
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 366, 646
BisI GCNGC 2 cut(s) 209, 428
BlsI GCNGC 2 cut(s) 210, 429
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 3 cut(s) 394, 511, 517
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 513
BmrFI CCNGG 3 cut(s) 394, 511, 517
BmsI GCATC 3 cut(s) 104, 204, 657
BpiI GAAGAC 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 517
Bsa29I ATCGAT 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 510
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 522
Bse3DI GCAATG 2 cut(s) 468, 634
BseBI CCWGG 2 cut(s) 394, 511
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 4 cut(s) 26, 195, 240, 318
BseLI CCNNNNNNNGG 2 cut(s) 516, 522
BseMI GCAATG 2 cut(s) 468, 634
BseMII CTCAG 4 cut(s) 35, 571, 641, 740
BseRI GAGGAG 1 cut(s) 715
BseXI GCAGC 2 cut(s) 195, 414
BseYI CCCAGC 1 cut(s) 286
BsgI GTGCAG 2 cut(s) 194, 413
BshFI GGCC 1 cut(s) 515
BshVI ATCGAT 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 2 cut(s) 516, 522
BsmAI GTCTC 2 cut(s) 366, 646
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 3 cut(s) 225, 550, 585
BspACI CCGC 2 cut(s) 132, 386
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 4 cut(s) 36, 572, 642, 739
BspDI ATCGAT 1 cut(s) 112
BspPI GGATC 1 cut(s) 233
BsrDI GCAATG 2 cut(s) 468, 634
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 3 cut(s) 225, 550, 585
BssSI CACGAG 1 cut(s) 614
Bst2BI CACGAG 1 cut(s) 614
Bst2UI CCWGG 2 cut(s) 394, 511
Bst4CI ACNGT 3 cut(s) 123, 498, 657
Bst6I CTCTTC 2 cut(s) 255, 311
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 5 cut(s) 44, 580, 650, 718, 726
BstF5I GGATG 4 cut(s) 26, 195, 240, 318
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 228, 553, 588
BstMAI GTCTC 2 cut(s) 366, 646
BstMBI GATC 3 cut(s) 225, 550, 585
BstMWI GCNNNNNNNGC 2 cut(s) 352, 512
BstNI CCWGG 2 cut(s) 394, 511
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 392, 509, 515
BstV1I GCAGC 2 cut(s) 195, 414
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
Bsu15I ATCGAT 1 cut(s) 112
BsuRI GGCC 1 cut(s) 515
BsuTUI ATCGAT 1 cut(s) 112
BtsCI GGATG 4 cut(s) 26, 195, 240, 318
BtsIMutI CAGTG 2 cut(s) 647, 662
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 513
ClaI ATCGAT 1 cut(s) 112
Csp6I GTAC 2 cut(s) 129, 693
CviAII CATG 6 cut(s) 135, 139, 150, 297, 364, 706
CviQI GTAC 2 cut(s) 129, 693
DdeI CTNAG 5 cut(s) 44, 580, 650, 718, 726
DpnI GATC 3 cut(s) 227, 552, 587
DpnII GATC 3 cut(s) 225, 550, 585
Eam1104I CTCTTC 2 cut(s) 255, 311
EarI CTCTTC 2 cut(s) 255, 311
Eco57I CTGAAG 2 cut(s) 59, 466
Eco88I CYCGRG 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 392, 509
EcoT22I ATGCAT 2 cut(s) 140, 672
FaeI CATG 6 cut(s) 138, 142, 153, 300, 367, 709
FatI CATG 6 cut(s) 134, 138, 149, 296, 363, 705
FauNDI CATATG 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 209, 428
FokI GGATG 4 cut(s) 13, 182, 247, 325
Fsp4HI GCNGC 2 cut(s) 209, 428
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 209, 428
GsaI CCCAGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 515
HapII CCGG 1 cut(s) 516
HhaI GCGC 1 cut(s) 195
Hin1II CATG 6 cut(s) 138, 142, 153, 300, 367, 709
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 259, 374
HpaII CCGG 1 cut(s) 516
HphI GGTGA 3 cut(s) 352, 408, 721
Hpy188I TCNGA 3 cut(s) 402, 581, 729
Hpy188III TCNNGA 4 cut(s) 30, 229, 492, 675
HpyAV CCTTC 3 cut(s) 277, 303, 617
HpyCH4III ACNGT 3 cut(s) 123, 498, 657
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 6 cut(s) 85, 138, 211, 367, 430, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 512
HpyF3I CTNAG 5 cut(s) 44, 580, 650, 718, 726
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 6 cut(s) 138, 142, 153, 300, 367, 709
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 225, 550, 585
LmnI GCTCC 2 cut(s) 168, 702
LpnPI CCDG 9 cut(s) 43, 272, 379, 406, 418, 496, 523, 529, 576
Lsp1109I GCAGC 2 cut(s) 195, 414
LweI GCATC 3 cut(s) 104, 204, 657
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 3 cut(s) 292, 609, 643
MalI GATC 3 cut(s) 227, 552, 587
MboI GATC 3 cut(s) 225, 550, 585
MboII GAAGA 9 cut(s) 60, 74, 242, 255, 262, 313, 328, 459, 478
MflI RGATCY 1 cut(s) 225
MluCI AATT 3 cut(s) 275, 404, 410
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 8 cut(s) 29, 225, 258, 312, 330, 561, 693, 735
Mph1103I ATGCAT 2 cut(s) 140, 672
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 3 cut(s) 394, 511, 517
Mva1269I GAATGC 1 cut(s) 670
MvaI CCWGG 2 cut(s) 394, 511
MwoI GCNNNNNNNGC 2 cut(s) 352, 512
NciI CCSGG 1 cut(s) 517
NdeI CATATG 1 cut(s) 215
NdeII GATC 3 cut(s) 225, 550, 585
NlaIII CATG 6 cut(s) 138, 142, 153, 300, 367, 709
NmuCI GTSAC 2 cut(s) 292, 643
NsiI ATGCAT 2 cut(s) 140, 672
NspI RCATGY 1 cut(s) 138
PaeI GCATGC 1 cut(s) 138
PaeR7I CTCGAG 1 cut(s) 229
PctI GAATGC 1 cut(s) 670
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 210, 429
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 392, 509
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 2 cut(s) 392, 509
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 2 cut(s) 130, 694
RsaNI GTAC 2 cut(s) 129, 693
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 2 cut(s) 209, 428
Sau3AI GATC 3 cut(s) 225, 550, 585
Sau96I GGNCC 1 cut(s) 513
ScaI AGTACT 1 cut(s) 694
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 394, 511, 517
SfaNI GCATC 3 cut(s) 104, 204, 657
Sfr274I CTCGAG 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SphI GCATGC 1 cut(s) 138
Sse9I AATT 3 cut(s) 275, 404, 410
SsiI CCGC 2 cut(s) 132, 386
StyD4I CCNGG 3 cut(s) 392, 509, 515
TaaI ACNGT 3 cut(s) 123, 498, 657
TaiI ACGT 1 cut(s) 605
TaqI TCGA 5 cut(s) 112, 230, 493, 500, 549
TasI AATT 3 cut(s) 275, 404, 410
TatI WGTACW 1 cut(s) 692
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 2 cut(s) 654, 662
TseFI GTSAC 2 cut(s) 292, 643
TseI GCWGC 2 cut(s) 208, 427
Tsp45I GTSAC 2 cut(s) 292, 643
TspDTI ATGAA 6 cut(s) 116, 329, 346, 429, 479, 613
TspRI CASTG 2 cut(s) 654, 662
XceI RCATGY 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 694
Zsp2I ATGCAT 2 cut(s) 140, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.