Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025114.1

Orthogroup ID

OG0003053

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 976

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

cgtcggaggcgctcaccaacaaagagtctgggtttcaccaacaaagagtctccaaattcttgtaatcgaaagaagcagagcagcatcaacagggaagaagaaacaaacaaacaaggagtggcaatggatggagggaagacaaagccgcaatcccagtccataactctcgaacagttcatctccatcacttcccctctcattgacttggaaaaggaagccgagatatctgcctccatcactagcggcgcgtccaggaacttggatactgctcaaaagaagggctccgccattctcaatttgaagtgcgtcgatgctcagacaggactcatgggcaagactcttcttgagttccagtctaccaaaacagaaaacagtaatgctctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

9.55

Isoelectric Point (pI)

70.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03270
fragaria_vesca	FvH4_6g23281 FvH4_6g23281 FvH4_6g23281 FvH4_6g23281 FvH4_6g23281
malus_domestica	MD12G1067500.v1.1 MD14G1067600.v1.1
prunus_persica	Prupe.7G066800_v2.0.a1 Prupe.7G066800_v2.0.a1
pyrus_communis	pycom12g05980 pycom14g05590
rosa_chinensis	RchiOBHm_Chr3g0481211 RchiOBHm_Chr3g0481241
rosa_laevigata	RLG00000023410 RLG00000023412
rosa_multiflora	Rmu_co8197524.1_g000001 Rmu_co8377165.1_g000001 Rmu_sc0000064.1_g000002 Rmu_sc0000064.1_g000004 Rmu_sc0000064.1_g000005 Rmu_sc0025114.1_g000001 Rmu_sc0031676.1_g000002 Rmu_sc0037191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003550 Rroxscaffold_6G00400580
rosa_rugosa	Rorug03G0190500 Rorug03G0190500 Rorug03G0190500
rosa_samantha	Rh2DG029300 Rh3AG241400 Rh3BG276800 Rh3CG272000 Rh3DG268400 Rh5AG477800
rosa_wichuraiana	Rw3G021540 Rw3G021560 Rw5G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	356
AccII	CGCG	1 cut(s)	248
AciI	CCGC	3 cut(s)	146, 243, 285
AcsI	RAATTY	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	12, 248
AsuHPI	GGTGA	2 cut(s)	6, 28
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	3 cut(s)	122, 191, 242
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	3 cut(s)	82, 146, 244
BlsI	GCNGC	3 cut(s)	83, 147, 245
Bme1390I	CCNGG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	93, 301
BmuI	ACTGGG	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	154, 352
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	154, 352
BseXI	GCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	284
BspACI	CCGC	3 cut(s)	146, 243, 285
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	154, 352
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	174, 374
Bst6I	CTCTTC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 248
BstMAI	GTCTC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	133
CfoI	GCGC	2 cut(s)	12, 248
CseI	GACGC	2 cut(s)	237, 295
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	3 cut(s)	145, 218, 282
CviKI_1	RGCY	3 cut(s)	145, 218, 282
DdeI	CTNAG	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	251
EcoRV	GATATC	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	1 cut(s)	331
FaiI	YATR	2 cut(s)	161, 329
FatI	CATG	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	3 cut(s)	82, 146, 244
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	82, 146, 244
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	2 cut(s)	11, 247
GluI	GCNGC	3 cut(s)	82, 146, 244
HaeII	RGCGCY	1 cut(s)	13
HgaI	GACGC	2 cut(s)	237, 295
HhaI	GCGC	2 cut(s)	12, 248
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	2 cut(s)	10, 246
HinP1I	GCGC	2 cut(s)	10, 246
HinfI	GANTC	4 cut(s)	25, 47, 324, 337
HphI	GGTGA	2 cut(s)	6, 28
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	2 cut(s)	6, 318
Hpy188III	TCNNGA	2 cut(s)	167, 344
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	174, 374
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	2 cut(s)	10, 246
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	7 cut(s)	14, 76, 167, 238, 265, 306, 365
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	2 cut(s)	93, 301
MaeI	CTAG	1 cut(s)	240
MboII	GAAGA	4 cut(s)	107, 110, 148, 332
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	55, 295
MlyI	GAGTC	4 cut(s)	34, 56, 318, 331
MnlI	CCTC	3 cut(s)	125, 204, 241
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	248
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	283
NmeAIII	GCCGAG	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	83, 147, 245
PleI	GAGTC	4 cut(s)	33, 55, 318, 331
PpsI	GAGTC	4 cut(s)	33, 55, 318, 331
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	283
SatI	GCNGC	3 cut(s)	82, 146, 244
SchI	GAGTC	4 cut(s)	34, 56, 318, 331
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	2 cut(s)	93, 301
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	55, 295
SsiI	CCGC	3 cut(s)	146, 243, 285
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	174, 374
TaqI	TCGA	3 cut(s)	67, 168, 309
TasI	AATT	2 cut(s)	55, 295
TauI	GCSGC	2 cut(s)	148, 246
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	166
XapI	RAATTY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.