Rw5G034800

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003053
Physical Location & Seq
Reverse (-)
60059899 .. 60068099
8201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034800.1

Sequence Viewer

Length: 414 bp
ATGACGCTACAAGACAAAATCCAAAAGGGTCGACCTAGTCAGGTTTGCCAGAGAAAGATAAACGGTGAGGTAGATTGGCGTGGTATTAGCTACGAAGACGAGGTTTTCATACTGAAGAAGTTGAAAAGCAATGAAGAAAAGCTAAAGGATTTGGAAATCTCAACAGTCGATGGCTTCCAGGGCCGGGAAAAGGAAGCCATCATTATTTCAATGGTTCGATCAAACTCAAAGAAAGAGGTTGGGTTTCTGAGCGATCACAGGCGAATGAACATGGCTGTAACACGAGCAACAAGGCAATCTTGTCTTGTCTGTGACACTGAGACAATGAGTAATGATGCATTCTTGAAGCGATTGATAGAGTACTTTGAGGAGCATGGTGAGTATCTAAGTGCATCAGAGTATAGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

137

Amino Acids

15.91

Weight (kDa)

5.81

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 31 - 106 2e-26 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 184, 190
AgsI TTSAA 3 cut(s) 124, 210, 346
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 90, 142
AluI AGCT 2 cut(s) 90, 142
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 77, 389
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 2 cut(s) 164, 206
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 36
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 179, 185
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 179, 185
BmsI GCATC 2 cut(s) 325, 401
BpiI GAAGAC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 190
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 184, 190
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 239, 309
BseRI GAGGAG 1 cut(s) 383
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 184, 190
BsmAI GTCTC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 218, 253
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 240, 310
BsrDI GCAATG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 218, 253
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 65, 166
BstDEI CTNAG 3 cut(s) 248, 318, 386
BstKTI GATC 2 cut(s) 221, 256
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 218, 253
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 177, 183
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 361
CviAII CATG 2 cut(s) 271, 374
CviJI RGCY 6 cut(s) 90, 142, 174, 183, 197, 275
CviKI_1 RGCY 6 cut(s) 90, 142, 174, 183, 197, 275
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 3 cut(s) 248, 318, 386
DpnI GATC 2 cut(s) 220, 255
DpnII GATC 2 cut(s) 218, 253
Eco57I CTGAAG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 2 cut(s) 274, 377
FaiI YATR 4 cut(s) 110, 272, 375, 402
FalI AAGNNNNNCTT 2 cut(s) 283, 315
FatI CATG 2 cut(s) 270, 373
FblI GTMKAC 1 cut(s) 31
FspBI CTAG 1 cut(s) 36
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 274, 377
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HpaII CCGG 1 cut(s) 184
HphI GGTGA 2 cut(s) 77, 389
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 249, 397
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 65, 166
HpyCH4V TGCA 2 cut(s) 338, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 3 cut(s) 248, 318, 386
Hsp92II CATG 2 cut(s) 274, 377
Kzo9I GATC 2 cut(s) 218, 253
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 6 cut(s) 26, 62, 164, 191, 197, 244
LweI GCATC 2 cut(s) 325, 401
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 277, 311
MalI GATC 2 cut(s) 220, 255
MboI GATC 2 cut(s) 218, 253
MboII GAAGA 3 cut(s) 107, 127, 146
MnlI CCTC 4 cut(s) 61, 94, 229, 361
Mph1103I ATGCAT 1 cut(s) 340
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 2 cut(s) 179, 185
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 185
NdeII GATC 2 cut(s) 218, 253
NlaIII CATG 2 cut(s) 274, 377
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 340
PctI GAATGC 1 cut(s) 338
PflFI GACNNNGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SalI GTCGAC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 218, 253
Sau96I GGNCC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 179, 185
SetI ASST 7 cut(s) 37, 45, 72, 92, 105, 144, 240
SfaNI GCATC 2 cut(s) 325, 401
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 177, 183
TaaI ACNGT 2 cut(s) 65, 166
TaqI TCGA 3 cut(s) 31, 168, 217
TatI WGTACW 1 cut(s) 360
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 97, 147, 281
TspRI CASTG 1 cut(s) 322
Tth111I GACNNNGTC 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.