Rh2DG029300

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003053
Physical Location & Seq
Forward (+)
1777077 .. 1778125
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG029300.1

Sequence Viewer

Length: 396 bp
ATGATTTTGGTGATTGTAGTTGATTGCTTAACTCATATTTGCTGGGATGAATGGGCAGAGTTACATGGGCCGATAAGCTATACGGTTTTCATACTGAAGAAGTTGAAAAGCAATGAAGAAAAGCTAAAGGATTTGGAAATCTCAACAGTCGATGGCTTCCAGGGCCGGGAAAAGGAAGCCATCATTATTTCAATGGTTCGATCAAACTCAAAGAAAGAGGTTGGGTTTATGAGCGATCACAGGCGAATGAACATGGCTGTAACACGAGCAACAAGGCAATGTTGTCTTGTCTGTGACACTGAGACAGTGAGTAATGATGCATTCTTGAAGCGATTGATAGAGTACTTTGAGGAGCATGGTGAGTATCTAAGTGCATCAGAGTATAGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

131

Amino Acids

15.16

Weight (kDa)

5.26

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 31 - 100 3.3e-26 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 166, 172
AgsI TTSAA 3 cut(s) 106, 192, 328
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 78, 124
AluI AGCT 2 cut(s) 78, 124
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 2 cut(s) 68, 163
AspS9I GGNCC 2 cut(s) 68, 163
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 22, 371
BauI CACGAG 1 cut(s) 264
BccI CCATC 2 cut(s) 146, 188
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 296
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 161, 167
BmgT120I GGNCC 2 cut(s) 68, 163
BmrFI CCNGG 2 cut(s) 161, 167
BmsI GCATC 2 cut(s) 307, 383
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 172
Bse3DI GCAATG 2 cut(s) 118, 284
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 166, 172
BseMI GCAATG 2 cut(s) 118, 284
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 2 cut(s) 70, 165
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 166, 172
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 2 cut(s) 70, 165
Bsp143I GATC 2 cut(s) 200, 235
BspANI GGCC 2 cut(s) 70, 165
BspCNI CTCAG 1 cut(s) 292
BsrDI GCAATG 2 cut(s) 118, 284
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 200, 235
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 85, 148, 307
BstDEI CTNAG 2 cut(s) 300, 368
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 203, 238
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 2 cut(s) 200, 235
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 159, 165
BsuRI GGCC 2 cut(s) 70, 165
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 297, 312
Cfr13I GGNCC 2 cut(s) 68, 163
Csp6I GTAC 1 cut(s) 343
CviAII CATG 3 cut(s) 65, 253, 356
CviJI RGCY 7 cut(s) 70, 78, 124, 156, 165, 179, 257
CviKI_1 RGCY 7 cut(s) 70, 78, 124, 156, 165, 179, 257
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 300, 368
DpnI GATC 2 cut(s) 202, 237
DpnII GATC 2 cut(s) 200, 235
Eco57I CTGAAG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 322
FaeI CATG 3 cut(s) 68, 256, 359
FaiI YATR 8 cut(s) 36, 66, 81, 92, 230, 254, 357, 384
FatI CATG 3 cut(s) 64, 252, 355
FokI GGATG 1 cut(s) 59
GsaI CCCAGC 1 cut(s) 46
HaeIII GGCC 2 cut(s) 70, 165
HapII CCGG 1 cut(s) 166
Hin1II CATG 3 cut(s) 68, 256, 359
HpaII CCGG 1 cut(s) 166
HphI GGTGA 2 cut(s) 22, 371
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 1 cut(s) 325
HpyCH4III ACNGT 3 cut(s) 85, 148, 307
HpyCH4V TGCA 2 cut(s) 320, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 300, 368
Hsp92II CATG 3 cut(s) 68, 256, 359
Kzo9I GATC 2 cut(s) 200, 235
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 5 cut(s) 28, 146, 173, 179, 226
LweI GCATC 2 cut(s) 307, 383
MaeIII GTNAC 3 cut(s) 60, 259, 293
MalI GATC 2 cut(s) 202, 237
MboI GATC 2 cut(s) 200, 235
MboII GAAGA 2 cut(s) 109, 128
MnlI CCTC 2 cut(s) 211, 343
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 161, 167
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 167
NdeII GATC 2 cut(s) 200, 235
NlaIII CATG 3 cut(s) 68, 256, 359
NmuCI GTSAC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 322
PctI GAATGC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 159
PspPI GGNCC 2 cut(s) 68, 163
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 200, 235
Sau96I GGNCC 2 cut(s) 68, 163
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 161, 167
SetI ASST 3 cut(s) 80, 126, 222
SfaNI GCATC 2 cut(s) 307, 383
StyD4I CCNGG 2 cut(s) 159, 165
TaaI ACNGT 3 cut(s) 85, 148, 307
TaqI TCGA 2 cut(s) 150, 199
TatI WGTACW 1 cut(s) 342
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 304, 312
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 63, 79, 129, 263
TspRI CASTG 2 cut(s) 304, 312
ZrmI AGTACT 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.