Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197524.1

Orthogroup ID

OG0003053

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 660

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197524.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 437 bp

gcgaccatcttcagcttcctccaaccatccagagtgctgaagctgagaagaaaggtttaggaagaaccctttttgaacgccttgcagacatatatggaaatgaagtggtatcgatgctgactgttcagtaccgcatgcatgagcgtatcatggattggtcgtcaaaggagctttacaatagtaaggttaaagcgcatccaagtgttgctgcacatatgcttttggatctcgaggatgtaaagaagacctcttcaacagaatcaacccttcttctaattgatatagctgggtatgcagttcattgttgtcatatactgactgtactgtattttataagaacaaaccctttaatacctgtcttaaggcagcagggtggcaattcgacctttttctttctgttttttttaccctcaaataaagacacagacatggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

144

Amino Acids

16.34

Weight (kDa)

6.31

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03270
fragaria_vesca	FvH4_6g23281 FvH4_6g23281 FvH4_6g23281 FvH4_6g23281 FvH4_6g23281
malus_domestica	MD12G1067500.v1.1 MD14G1067600.v1.1
prunus_persica	Prupe.7G066800_v2.0.a1 Prupe.7G066800_v2.0.a1
pyrus_communis	pycom12g05980 pycom14g05590
rosa_chinensis	RchiOBHm_Chr3g0481211 RchiOBHm_Chr3g0481241
rosa_laevigata	RLG00000023410 RLG00000023412
rosa_multiflora	Rmu_co8197524.1_g000001 Rmu_co8377165.1_g000001 Rmu_sc0000064.1_g000002 Rmu_sc0000064.1_g000004 Rmu_sc0000064.1_g000005 Rmu_sc0025114.1_g000001 Rmu_sc0031676.1_g000002 Rmu_sc0037191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003550 Rroxscaffold_6G00400580
rosa_rugosa	Rorug03G0190500 Rorug03G0190500 Rorug03G0190500
rosa_samantha	Rh2DG029300 Rh3AG241400 Rh3BG276800 Rh3CG272000 Rh3DG268400 Rh5AG477800
rosa_wichuraiana	Rw3G021540 Rw3G021560 Rw5G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	334
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	130, 323
AflII	CTTAAG	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	76, 254
AluBI	AGCT	4 cut(s)	15, 43, 171, 286
AluI	AGCT	4 cut(s)	15, 43, 171, 286
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	208, 366
AspLEI	GCGC	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	195, 378
BccI	CCATC	2 cut(s)	14, 34
BfrI	CTTAAG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	209, 367
BlsI	GCNGC	2 cut(s)	210, 368
BmeT110I	CYCGRG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	104, 204
BpiI	GAAGAC	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	112
BseGI	GGATG	3 cut(s)	26, 195, 240
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	195, 378
BseYI	CCCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	112
BspPI	GGATC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	360
BssMI	GATC	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	123, 321, 326
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	3 cut(s)	26, 195, 240
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	195, 378
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	112
BsuTUI	ATCGAT	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	26, 195, 240
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	195
ClaI	ATCGAT	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	129, 322
CviAII	CATG	5 cut(s)	135, 139, 150, 429, 434
CviJI	RGCY	4 cut(s)	15, 43, 171, 286
CviKI_1	RGCY	4 cut(s)	15, 43, 171, 286
CviQI	GTAC	2 cut(s)	129, 322
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	140
FaeI	CATG	5 cut(s)	138, 142, 153, 432, 437
FatI	CATG	5 cut(s)	134, 138, 149, 428, 433
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	209, 367
FokI	GGATG	3 cut(s)	13, 182, 247
Fsp4HI	GCNGC	2 cut(s)	209, 367
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	2 cut(s)	209, 367
GsaI	CCCAGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	138, 142, 153, 432, 437
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	30, 229
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	3 cut(s)	123, 321, 326
HpyCH4V	TGCA	4 cut(s)	85, 138, 211, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	138, 142, 153, 432, 437
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	4 cut(s)	43, 272, 355, 368
Lsp1109I	GCAGC	2 cut(s)	195, 378
LweI	GCATC	2 cut(s)	104, 204
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	5 cut(s)	60, 74, 242, 255, 262
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	2 cut(s)	275, 378
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	29, 225, 258, 420
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	3 cut(s)	188, 349, 361
MslI	CAYNNNNRTG	2 cut(s)	200, 427
MspCI	CTTAAG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	5 cut(s)	138, 142, 153, 432, 437
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	210, 368
PsiI	TTATAA	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	2 cut(s)	130, 323
RsaNI	GTAC	2 cut(s)	129, 322
RseI	CAYNNNNRTG	2 cut(s)	200, 427
SaqAI	TTAA	3 cut(s)	188, 349, 361
SatI	GCNGC	2 cut(s)	209, 367
Sau3AI	GATC	1 cut(s)	225
SetI	ASST	9 cut(s)	17, 45, 57, 173, 188, 250, 288, 357, 388
SfaNI	GCATC	2 cut(s)	104, 204
Sfr274I	CTCGAG	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	200, 427
SmlI	CTYRAG	2 cut(s)	229, 360
SmoI	CTYRAG	2 cut(s)	229, 360
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	2 cut(s)	275, 378
SsiI	CCGC	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	123, 321, 326
TaqI	TCGA	3 cut(s)	112, 230, 382
TasI	AATT	2 cut(s)	275, 378
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	3 cut(s)	188, 349, 361
Tru9I	TTAA	3 cut(s)	188, 349, 361
TseI	GCWGC	2 cut(s)	208, 366
TspDTI	ATGAA	2 cut(s)	116, 289
Vha464I	CTTAAG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	229
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.