Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Forward (+)

19342724 .. 19368428

Gene Structure 25705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25460.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3765 bp

ATGGCGGCGTTGCAGTCCTCGTCACTCGGTCCTCCCATTCCTCCTCAGCTGCTTCACTACTCCAATGGCTTTCGCTCCTCCCCTTTTCTCGTCGATTTCGTCGGCTACTGCAAATCAAAGAGGACCCGCCGTAAACATTTCGGAGGAGCTCTACGGTCAACCTTCCCCCATTCTGTTTCCAAAGCCGTTCTTCATCTTCCTCCACCCGATCACTCATCTCCTTCTCCTACCTCCAAGCCCCAGGTTGCGGACTTGAAAGAAATAATATCAGAAAGAGGAGCCTGTGGAGTCGGATTCATTGCCAATTTGGACAACAAGGCATCTCATGACATTGTTAAGGATGCTCTTACAGCTCTTGGCTGCATGGAACATCGTGGTGGCTGTGGAGCAGATAATGAGTCTGGTGATGGTGCAGGATTGATGAGTTCAATCCCATGGGATCTGTTTAACAATTGGGCTGACAAGCAAGGGATTGCATCATTTGACAAGTTACACACTGGTGTCGGAATGGTTTTCCTCCCCAAAGAGGACAACCTTATGAAAGAAGCCAAAAAAGCTATTGTAAATATTTTCAAACAAGAAGGTCTTGAAGTGCTTGGATGGAGACCTGTTCCCGTGAATACAGCTATAGTTGGTTTCAATGCAAAAGAAACAATGCCCAGCATTCAACAGGTATTCGTCAAAGTTGTTAAAGAGGAAAAAGTTGAGGACATTGAGCGAGAACTGTACATCTGCCGGAAGTTGATCGAAAGAGCAGCAATCTCAGAAAGTTGGGGCAGTGATCTTTATTTCTGTTCTTTGTCCAATCAAACAATAGTTTACAAAGGAATGCTACGCTCAGAAGCTCTTGGTTTATTTTATTCTGACCTCCAAAGTGATCTCTATAAATCTTCTTTCGCCATCTATCATCGAAGGTATAGCACAAATACCACTCCCAGATGGCCCCTTGCACAACCAATGAGGTTACTTGGTCACAACGGAGAGATCAATACCATACAGGGGAACTTGAACTGGATGCAATCACGTGAATCCTCACTGAAGTCGCCTGTATGGCATGGTCGTGAAAATGAAATTCGTCCATATGGAAATCCAAAGGGTTCAGACTCTGCGAATCTTGACAGTGCAGCAGAATTCTTACTAAGAAGTGGCCGCACTGCTGAGGAGGCTCTGATGATTCTTGTCCCTGAGGGATACAAAAATCACCCAACTTTGATGATTAACTATCCGGAGGTGGTTGATTTTTATGATTATTACAAGGGTCAGATGGAGGCTTGGGATGGACCTGCTTTATTGTTATTCAGTGATGGAAAAACAGTTGGGGCATGTCTTGATCGTAATGGACTTCGGCCTGCTAGATATTGGCGGACATCTGATAATGTTGTTTATGTAGCATCTGAGGTTGGGGTTCTTCCTGTGGATGATTCAAAAGTTACAATGAAAGGTCGTCTAGGTCCTGGAATGATGATATCTGTTGACTTACTAAGTGGTCAGGTTTATGAGAATACAGAAGTTAAGAAGCGAGTAGCTTTGTCAAATCCATATGGAACATGGGTGCAGGAAAACATGCGGACCTTGAAGGCTGTGAACTTCCTTTCATCCACAATTGCGGACAATGATGCAATACTGAGACGGCAACAGGCATTTGGCTACTCGAGTGAGGATGTCCAAATGGTTATTGAGACAATGGCTTCACAAGGGAAGGAGCCTACATTTTGCATGGGTGATGACATTCCATTGGCAATTTTATCCCAGAGACCACATATGCTATATGACTATTTCAAGCAACGATTTGCACAGGTTACGAATCCAGCCATTGATCCTCTAAGAGAAGGGTTAGTTATGTCTCTTGAAGTCAACATTGGAAAGCGTCGAAATATTTTGGAGGTTGGACCTGAAAATGCATTGCAGGTTATCCTGTCCAGTCCTGTGCTCAATGAAGGAGAACTTGAGTCATTGCTTAATGATGCTCAACTAAAACCCCATGTTTTACCTACATTTTTTGATATTCATAAAGGGGTTGATGGTTCTTTGGAAAAAGCCCTGTATAGGCTTTGTGAAGCTGCTGATGATGCTGTTCAAAATGGTTGCCAATTGCTTGTTCTGTCTGATCGATCTGATGAGTTGGAAGCTACTCATCCTGCAATTCCGATCCTTCTTGCCGTTGGTGCTGTTCATCAGCATCTTATTCAAAATGGGTTGAGAATGTCAGCTTCTATAATAGTGGATACTGCTCAGTGCTTTAGCACTCATCAATTTGCCTGCTTGATTGGATACGGTGCAAGTGGCGTGTGTCCATACTTGGCACTGGAGACATGTCGGCAGTGGCGTTTGAGTAATAAAACGGTTAATCTAATGCGGAACGGAAAGATGCCTAGTGTAACGATTGAACAGGCTCAAAAGAACTTCTGCAAGGCTGTTAGGGCTGGTCTTCTCAAAATTCTTTCCAAAATGGGTATCTCATTGCTTTCAAGTTATTGCGGTGCACAGATTTTTGAGATTTATGGATTGGGAAAGGGGGTTGTTGATCTTGCATTTTGTGGGAGTATATCAAGTATCGGTGGATTAACTTTTGATGAGCTGGCAAGGGAGACTTTGTCCTTCTGGGTGAAGGCTTTCTCTGAGGATACAGCTAAACGACTGGAAAATTTTGGATTTATACAATTCAGACCAGGAGGGGAGTATCATGGAAACAACCCAGAGATGTCAAAGCTGCTACACAAAGCTGTCCGCCAGAAGAATGAAAGTGCCTTTTCTGTTTATCAGCAGCATTTAGCTAACCGGCCTGTGAATGTTCTTCGTGATCTCATTGAGTTCAAAAGCGACCGTGCTCCTATTCCTGTTGGAAAGGTTGAACCTGCTGTATCCATTGTTCAACGATTCTGCACTGGTGGGATGTCACTTGGAGCTATTTCCAGAGAAACTCATGAGGCTATAGCCATTGCAATGAACAGAATAGGTGGAAAGTCCAATTCTGGAGAAGGTGGTGAGGATCCAATTCGCTGGAAACCACTAGCAGATGTTGTTGATGGGTACTCACCAACCCTTCCACATCTGAAAGGTCTTCAAAATGGAGATACTGCTACAAGTGCTATCAAGCAGGTTGCTTCAGGACGTTTTGGAGTCACTCCAACATTCTTGGTCAATGCTGATCAGCTGGAAATCAAAATTGCACAAGGGGCAAAGCCTGGTGAAGGTGGACAACTGCCTGGTAAAAAAGTTAGTGCATACATTGCGAGGTTGAGAAACTCAAAACCTGGGGTTCCACTTATATCTCCACCTCCACACCATGACATTTATTCTATAGAGGATCTTGCCCAATTGATCTATGACCTTCATCAGGTGAACCCTAAAGCTAAGGTATCAGTGAAACTTGTGGCTGAAGCTGGAATAGGCACTGTTGCTTCTGGGGTCGCAAAGGGTAATGCTGATGTCATACAGATATCAGGGCATGATGGTGGAACTGGTGCCAGTCCTATAAGTTCCATTAAGCATGCTGGTGGACCCTGGGAACTTGGACTCACAGAGACGCACCAGACACTCATAGAAAATGGACTTAGAGAACGAGTCATTCTTAGAGTTGATGGTGGCTTTAAAAGCGGAGTTGATGTCCTAATGGCTGCAACTATGGGTGCTGATGAGTACGGGTTTGGTTCTGTGGCAATGATTGCTACAGGTTGTGTTATGGCCCGCATTTGCCATACGAATAACTGCCCTGTTGGTGTAGCCAGCCAGTTTCGTGCTACATATGAAAAATGCATGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

1255

Amino Acids

136.91

Weight (kDa)

7.02

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	95 - 517	1.3e-177	Glutamine amidotransferases class-II
Glu_syn_central	PF04898	543 - 836	1.7e-106	Glutamate synthase central domain
Glu_synthase	PF01645	896 - 1261	8.6e-146	Conserved region in glutamate synthase
GXGXG	PF01493	1293 - 1476	1.5e-78	GXGXG motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	1291, 1897, 2863, 3088
AccB1I	GGYRCC	1 cut(s)	3464
AccIII	TCCGGA	1 cut(s)	1225
AclWI	GGATC	6 cut(s)	447, 1811, 2143, 2984, 2997, 3315
AcoI	YGGCCR	1 cut(s)	1147
AcsI	RAATTY	4 cut(s)	1071, 1130, 2436, 2644
AcuI	CTGAAG	3 cut(s)	1058, 3090, 3399
AcvI	CACGTG	1 cut(s)	1025
AfaI	GTAC	3 cut(s)	728, 3032, 3641
AfiI	CCNNNNNNNGG	6 cut(s)	247, 526, 999, 2046, 3191, 3337
AflIII	ACRYGT	1 cut(s)	2312
AjnI	CCWGG	7 cut(s)	240, 1453, 2668, 3184, 3205, 3253, 3503
AjuI	GAANNNNNNNTTGG	4 cut(s)	1842, 1874, 2082, 2114
AleI	CACNNNNGTG	1 cut(s)	498
Alw21I	GWGCWC	4 cut(s)	151, 1932, 2485, 2830
Alw26I	GTCTC	8 cut(s)	598, 1621, 1673, 1747, 1848, 2303, 2582, 3518
Alw44I	GTGCAC	1 cut(s)	2481
AlwI	GGATC	6 cut(s)	447, 1811, 2143, 2984, 2997, 3315
AlwNI	CAGNNNCTG	1 cut(s)	1106
Ama87I	CYCGRG	1 cut(s)	1651
Aor13HI	TCCGGA	1 cut(s)	1225
AoxI	GGCC	5 cut(s)	941, 1147, 1346, 2780, 3684
ApaLI	GTGCAC	1 cut(s)	2481
ApeKI	GCWGC	8 cut(s)	49, 360, 755, 1124, 2060, 2710, 2764, 3617
ApoI	RAATTY	4 cut(s)	1071, 1130, 2436, 2644
Asp700I	GAANNNNTTC	1 cut(s)	2612
AspS9I	GGNCC	9 cut(s)	29, 123, 942, 1280, 1451, 1569, 1889, 3500, 3685
AsuHPI	GGTGA	8 cut(s)	416, 1193, 1733, 2617, 2996, 3027, 3200, 3352
AvaI	CYCGRG	1 cut(s)	1651
AvaII	GGWCC	7 cut(s)	29, 123, 1280, 1451, 1569, 1889, 3500
AxyI	CCTNAGG	1 cut(s)	1185
BaeGI	GKGCMC	1 cut(s)	2485
BamHI	GGATCC	1 cut(s)	2989
BanI	GGYRCC	1 cut(s)	3464
BanII	GRGCYC	1 cut(s)	151
BbrPI	CACGTG	1 cut(s)	1025
BbsI	GAAGAC	2 cut(s)	2420, 3053
Bbv12I	GWGCWC	4 cut(s)	151, 1932, 2485, 2830
BbvCI	CCTCAGC	2 cut(s)	45, 1158
BbvI	GCAGC	8 cut(s)	36, 347, 767, 1136, 2047, 2697, 2776, 3604
BceAI	ACGGC	4 cut(s)	114, 170, 1646, 2144
BciT130I	CCWGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
BciVI	GTATCC	5 cut(s)	1184, 2218, 2264, 2617, 2872
BclI	TGATCA	1 cut(s)	3148
BcoDI	GTCTC	8 cut(s)	598, 1621, 1673, 1747, 1848, 2303, 2582, 3518
BfaI	CTAG	4 cut(s)	1353, 1448, 2373, 3011
BfmI	CTRYAG	4 cut(s)	627, 2931, 3300, 3669
BfuAI	ACCTGC	4 cut(s)	1291, 1897, 2863, 3088
BfuI	GTATCC	5 cut(s)	1184, 2218, 2264, 2617, 2872
BglI	GCCNNNNNGGC	1 cut(s)	1051
Bme1390I	CCNGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
Bme18I	GGWCC	7 cut(s)	29, 123, 1280, 1451, 1569, 1889, 3500
BmeT110I	CYCGRG	1 cut(s)	1651
BmgT120I	GGNCC	9 cut(s)	29, 123, 942, 1280, 1451, 1569, 1889, 3500, 3685
BmiI	GGNNCC	8 cut(s)	125, 280, 944, 1704, 2991, 3261, 3466, 3502
BmrFI	CCNGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
BpiI	GAAGAC	2 cut(s)	2420, 3053
BpmI	CTGGAG	2 cut(s)	2327, 2994
Bpu10I	CCTNAGC	3 cut(s)	45, 1158, 3354
BpuEI	CTTGAG	1 cut(s)	1967
Bsa29I	ATCGAT	1 cut(s)	2110
BsaAI	YACGTR	1 cut(s)	1025
BsaI	GGTCTC	2 cut(s)	598, 1747
BsaJI	CCNNGG	5 cut(s)	240, 434, 3254, 3503, 3504
BsaWI	WCCGGW	1 cut(s)	1225
BsaXI	ACNNNNNCTCC	4 cut(s)	2579, 2609, 3591, 3621
Bsc4I	CCNNNNNNNGG	6 cut(s)	247, 526, 999, 2046, 3191, 3337
Bse118I	RCCGGY	1 cut(s)	2778
Bse1I	ACTGG	9 cut(s)	502, 1016, 1920, 2310, 2643, 2890, 3466, 3468, 3730
Bse21I	CCTNAGG	1 cut(s)	1185
Bse3DI	GCAATG	8 cut(s)	297, 1901, 1952, 2459, 2937, 2949, 3228, 3666
BseAI	TCCGGA	1 cut(s)	1225
BseBI	CCWGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
BseCI	ATCGAT	1 cut(s)	2110
BseDI	CCNNGG	5 cut(s)	240, 434, 3254, 3503, 3504
BseGI	GGATG	9 cut(s)	346, 605, 1020, 1282, 1423, 1595, 1666, 2134, 2898
BseLI	CCNNNNNNNGG	6 cut(s)	247, 526, 999, 2046, 3191, 3337
BseMI	GCAATG	8 cut(s)	297, 1901, 1952, 2459, 2937, 2949, 3228, 3666
BseMII	CTCAG	9 cut(s)	59, 777, 852, 1149, 1176, 1386, 1616, 2246, 2610
BseNI	ACTGG	9 cut(s)	502, 1016, 1920, 2310, 2643, 2890, 3466, 3468, 3730
BseRI	GAGGAG	5 cut(s)	33, 67, 159, 291, 1175
BseSI	GKGCMC	1 cut(s)	2485
BseXI	GCAGC	8 cut(s)	36, 347, 767, 1136, 2047, 2697, 2776, 3604
BseYI	CCCAGC	1 cut(s)	659
BsgI	GTGCAG	4 cut(s)	432, 1143, 1574, 2866
Bsh1285I	CGRYCG	1 cut(s)	2824
BshFI	GGCC	5 cut(s)	943, 1149, 1348, 2782, 3686
BshNI	GGYRCC	1 cut(s)	3464
BshVI	ATCGAT	1 cut(s)	2110
BsiEI	CGRYCG	1 cut(s)	2824
BsiHKAI	GWGCWC	4 cut(s)	151, 1932, 2485, 2830
BsiHKCI	CYCGRG	1 cut(s)	1651
BsiSI	CCGG	3 cut(s)	736, 1226, 2779
BslFI	GGGAC	1 cut(s)	1166
BslI	CCNNNNNNNGG	6 cut(s)	247, 526, 999, 2046, 3191, 3337
BsmAI	GTCTC	8 cut(s)	598, 1621, 1673, 1747, 1848, 2303, 2582, 3518
BsmBI	CGTCTC	2 cut(s)	1621, 3518
BsmFI	GGGAC	1 cut(s)	1166
BsmI	GAATGC	2 cut(s)	663, 834
BsnI	GGCC	5 cut(s)	943, 1149, 1348, 2782, 3686
Bso31I	GGTCTC	2 cut(s)	598, 1747
BsoBI	CYCGRG	1 cut(s)	1651
Bsp1286I	GDGCHC	4 cut(s)	151, 1932, 2485, 2830
Bsp13I	TCCGGA	1 cut(s)	1225
Bsp1407I	TGTACA	1 cut(s)	726
Bsp19I	CCATGG	1 cut(s)	434
BspANI	GGCC	5 cut(s)	943, 1149, 1348, 2782, 3686
BspCNI	CTCAG	9 cut(s)	58, 776, 851, 1150, 1177, 1387, 1617, 2245, 2611
BspDI	ATCGAT	1 cut(s)	2110
BspEI	TCCGGA	1 cut(s)	1225
BspHI	TCATGA	2 cut(s)	325, 2923
BspLI	GGNNCC	8 cut(s)	125, 280, 944, 1704, 2991, 3261, 3466, 3502
BspMI	ACCTGC	4 cut(s)	1291, 1897, 2863, 3088
BspPI	GGATC	6 cut(s)	447, 1811, 2143, 2984, 2997, 3315
BspT107I	GGYRCC	1 cut(s)	3464
BspTNI	GGTCTC	2 cut(s)	598, 1747
BsrDI	GCAATG	8 cut(s)	297, 1901, 1952, 2459, 2937, 2949, 3228, 3666
BsrFI	RCCGGY	1 cut(s)	2778
BsrGI	TGTACA	1 cut(s)	726
BsrI	ACTGG	9 cut(s)	502, 1016, 1920, 2310, 2643, 2890, 3466, 3468, 3730
BssAI	RCCGGY	1 cut(s)	2778
BssECI	CCNNGG	5 cut(s)	240, 434, 3254, 3503, 3504
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
Bst4CI	ACNGT	8 cut(s)	156, 726, 1121, 1315, 2276, 2344, 2825, 3397
BstAPI	GCANNNNNTGC	2 cut(s)	3230, 3665
BstAUI	TGTACA	1 cut(s)	726
BstBAI	YACGTR	1 cut(s)	1025
BstC8I	GCNNGC	6 cut(s)	1350, 2260, 2580, 3492, 3688, 3727
BstDSI	CCRYGG	1 cut(s)	434
BstENI	CCTNNNNNAGG	2 cut(s)	3189, 3335
BstF5I	GGATG	9 cut(s)	346, 605, 1020, 1282, 1423, 1595, 1666, 2134, 2898
BstMAI	GTCTC	8 cut(s)	598, 1621, 1673, 1747, 1848, 2303, 2582, 3518
BstMCI	CGRYCG	1 cut(s)	2824
BstNI	CCWGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
BstNSI	RCATGY	4 cut(s)	1326, 1567, 2316, 3494
BstSCI	CCNGG	7 cut(s)	240, 1453, 2668, 3184, 3205, 3253, 3503
BstSFI	CTRYAG	4 cut(s)	627, 2931, 3300, 3669
BstSLI	GKGCMC	1 cut(s)	2485
BstV1I	GCAGC	8 cut(s)	36, 347, 767, 1136, 2047, 2697, 2776, 3604
BstV2I	GAAGAC	2 cut(s)	2420, 3053
BstX2I	RGATCY	3 cut(s)	439, 2989, 3307
BstXI	CCANNNNNNTGG	1 cut(s)	3000
BstYI	RGATCY	3 cut(s)	439, 2989, 3307
Bsu15I	ATCGAT	1 cut(s)	2110
Bsu36I	CCTNAGG	1 cut(s)	1185
BsuI	GTATCC	5 cut(s)	1184, 2218, 2264, 2617, 2872
BsuRI	GGCC	5 cut(s)	943, 1149, 1348, 2782, 3686
BsuTUI	ATCGAT	1 cut(s)	2110
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	9 cut(s)	346, 605, 1020, 1282, 1423, 1595, 1666, 2134, 2898
BtsI	GCAGTG	3 cut(s)	784, 1152, 2327
BveI	ACCTGC	4 cut(s)	1291, 1897, 2863, 3088
Cac8I	GCNNGC	6 cut(s)	1350, 2260, 2580, 3492, 3688, 3727
CaiI	CAGNNNCTG	1 cut(s)	1106
CciI	TCATGA	2 cut(s)	325, 2923
Cfr10I	RCCGGY	1 cut(s)	2778
Cfr13I	GGNCC	9 cut(s)	29, 123, 942, 1280, 1451, 1569, 1889, 3500, 3685
ClaI	ATCGAT	1 cut(s)	2110
CseI	GACGC	2 cut(s)	1856, 3535
Csp6I	GTAC	3 cut(s)	727, 3031, 3640
CviQI	GTAC	3 cut(s)	727, 3031, 3640
DraI	TTTAAA	1 cut(s)	3592
EaeI	YGGCCR	1 cut(s)	1147
EciI	GGCGGA	2 cut(s)	1378, 2717
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	2 cut(s)	598, 1747
Eco32I	GATATC	2 cut(s)	1467, 3441
Eco47I	GGWCC	7 cut(s)	29, 123, 1280, 1451, 1569, 1889, 3500
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	3 cut(s)	1058, 3090, 3399
Eco72I	CACGTG	1 cut(s)	1025
Eco81I	CCTNAGG	1 cut(s)	1185
Eco88I	CYCGRG	1 cut(s)	1651
EcoICRI	GAGCTC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	2 cut(s)	3189, 3335
EcoO109I	RGGNCCY	2 cut(s)	123, 1451
EcoRI	GAATTC	1 cut(s)	1130
EcoRII	CCWGG	7 cut(s)	240, 1453, 2668, 3184, 3205, 3253, 3503
EcoRV	GATATC	2 cut(s)	1467, 3441
EcoT14I	CCWWGG	1 cut(s)	434
EcoT22I	ATGCAT	2 cut(s)	1903, 3758
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	434
Esp3I	CGTCTC	2 cut(s)	1621, 3518
FalI	AAGNNNNNCTT	8 cut(s)	174, 206, 570, 602, 1929, 1961, 2575, 2607
FaqI	GGGAC	1 cut(s)	1166
FauI	CCCGC	2 cut(s)	134, 3695
FauNDI	CATATG	4 cut(s)	1081, 1540, 1761, 3745
FbaI	TGATCA	1 cut(s)	3148
FokI	GGATG	9 cut(s)	353, 612, 1027, 1289, 1430, 1582, 1673, 2121, 2905
FriOI	GRGCYC	1 cut(s)	151
FspBI	CTAG	4 cut(s)	1353, 1448, 2373, 3011
GsaI	CCCAGC	1 cut(s)	663
GsuI	CTGGAG	2 cut(s)	2327, 2994
HaeIII	GGCC	5 cut(s)	943, 1149, 1348, 2782, 3686
HapII	CCGG	3 cut(s)	736, 1226, 2779
HgaI	GACGC	2 cut(s)	1856, 3535
HincII	GTYRAC	3 cut(s)	159, 1474, 1855
HindII	GTYRAC	3 cut(s)	159, 1474, 1855
HpaII	CCGG	3 cut(s)	736, 1226, 2779
HphI	GGTGA	8 cut(s)	416, 1193, 1733, 2617, 2996, 3027, 3200, 3352
Hpy99I	CGWCG	3 cut(s)	95, 104, 1872
HpyCH4III	ACNGT	8 cut(s)	156, 726, 1121, 1315, 2276, 2344, 2825, 3397
HpyCH4IV	ACGT	2 cut(s)	1024, 3112
HpySE526I	ACGT	2 cut(s)	1024, 3112
Kpn2I	TCCGGA	1 cut(s)	1225
Ksp22I	TGATCA	1 cut(s)	3148
LmnI	GCTCC	7 cut(s)	80, 146, 278, 386, 1702, 2833, 2903
Lsp1109I	GCAGC	8 cut(s)	36, 347, 767, 1136, 2047, 2697, 2776, 3604
MaeI	CTAG	4 cut(s)	1353, 1448, 2373, 3011
MaeII	ACGT	2 cut(s)	1024, 3112
MaeIII	GTNAC	9 cut(s)	21, 489, 963, 971, 1429, 1798, 2377, 2895, 3121
MboII	GAAGA	8 cut(s)	182, 188, 882, 1400, 2420, 2746, 2786, 3053
MfeI	CAATTG	4 cut(s)	451, 1602, 2090, 3317
MflI	RGATCY	3 cut(s)	439, 2989, 3307
MhlI	GDGCHC	4 cut(s)	151, 1932, 2485, 2830
MlyI	GAGTC	7 cut(s)	297, 407, 1097, 1958, 3129, 3510, 3573
MmeI	TCCRAC	6 cut(s)	271, 484, 1867, 2103, 2821, 3152
Mph1103I	ATGCAT	2 cut(s)	1903, 3758
MroI	TCCGGA	1 cut(s)	1225
MroXI	GAANNNNTTC	1 cut(s)	2612
MslI	CAYNNNNRTG	6 cut(s)	375, 498, 1059, 2942, 3453, 3495
MspA1I	CMGCKG	2 cut(s)	49, 3154
MspI	CCGG	3 cut(s)	736, 1226, 2779
MspR9I	CCNGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
MunI	CAATTG	4 cut(s)	451, 1602, 2090, 3317
Mva1269I	GAATGC	2 cut(s)	663, 834
MvaI	CCWGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
NcoI	CCATGG	1 cut(s)	434
NdeI	CATATG	4 cut(s)	1081, 1540, 1761, 3745
NlaIV	GGNNCC	8 cut(s)	125, 280, 944, 1704, 2991, 3261, 3466, 3502
NmuCI	GTSAC	4 cut(s)	21, 971, 2895, 3121
NsiI	ATGCAT	2 cut(s)	1903, 3758
NspI	RCATGY	4 cut(s)	1326, 1567, 2316, 3494
OliI	CACNNNNGTG	1 cut(s)	498
PaeI	GCATGC	1 cut(s)	3494
PaeR7I	CTCGAG	1 cut(s)	1651
PagI	TCATGA	2 cut(s)	325, 2923
PasI	CCCWGGG	1 cut(s)	3504
PciI	ACATGT	1 cut(s)	2312
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 2323
PctI	GAATGC	2 cut(s)	663, 834
PdmI	GAANNNNTTC	1 cut(s)	2612
PfeI	GAWTC	7 cut(s)	294, 1028, 1111, 1174, 1421, 1804, 2877
PflFI	GACNNNGTC	1 cut(s)	2593
PfoI	TCCNGGA	1 cut(s)	1453
PleI	GAGTC	7 cut(s)	296, 406, 1097, 1957, 3128, 3510, 3572
PmaCI	CACGTG	1 cut(s)	1025
PmlI	CACGTG	1 cut(s)	1025
PpsI	GAGTC	7 cut(s)	296, 406, 1097, 1957, 3128, 3510, 3572
Ppu21I	YACGTR	1 cut(s)	1025
PpuMI	RGGWCCY	2 cut(s)	123, 1451
PscI	ACATGT	1 cut(s)	2312
Psp124BI	GAGCTC	1 cut(s)	151
Psp5II	RGGWCCY	2 cut(s)	123, 1451
Psp6I	CCWGG	7 cut(s)	240, 1453, 2668, 3184, 3205, 3253, 3503
PspCI	CACGTG	1 cut(s)	1025
PspFI	CCCAGC	1 cut(s)	659
PspGI	CCWGG	7 cut(s)	240, 1453, 2668, 3184, 3205, 3253, 3503
PspN4I	GGNNCC	8 cut(s)	125, 280, 944, 1704, 2991, 3261, 3466, 3502
PspPI	GGNCC	9 cut(s)	29, 123, 942, 1280, 1451, 1569, 1889, 3500, 3685
PspPPI	RGGWCCY	2 cut(s)	123, 1451
PspXI	VCTCGAGB	1 cut(s)	1651
PsrI	GAACNNNNNNTAC	2 cut(s)	2853, 2885
PstNI	CAGNNNCTG	1 cut(s)	1106
PsuI	RGATCY	3 cut(s)	439, 2989, 3307
PsyI	GACNNNGTC	1 cut(s)	2593
PvuII	CAGCTG	2 cut(s)	49, 3154
RsaI	GTAC	3 cut(s)	728, 3032, 3641
RsaNI	GTAC	3 cut(s)	727, 3031, 3640
RseI	CAYNNNNRTG	6 cut(s)	375, 498, 1059, 2942, 3453, 3495
SacI	GAGCTC	1 cut(s)	151
Sau96I	GGNCC	9 cut(s)	29, 123, 942, 1280, 1451, 1569, 1889, 3500, 3685
SchI	GAGTC	7 cut(s)	297, 407, 1097, 1958, 3129, 3510, 3573
ScrFI	CCNGG	7 cut(s)	242, 1455, 2670, 3186, 3207, 3255, 3505
SduI	GDGCHC	4 cut(s)	151, 1932, 2485, 2830
SfcI	CTRYAG	4 cut(s)	627, 2931, 3300, 3669
Sfr274I	CTCGAG	1 cut(s)	1651
SinI	GGWCC	7 cut(s)	29, 123, 1280, 1451, 1569, 1889, 3500
SlaI	CTCGAG	1 cut(s)	1651
SmiMI	CAYNNNNRTG	6 cut(s)	375, 498, 1059, 2942, 3453, 3495
SmlI	CTYRAG	2 cut(s)	1651, 1946
SmoI	CTYRAG	2 cut(s)	1651, 1946
SphI	GCATGC	1 cut(s)	3494
SspI	AATATT	2 cut(s)	568, 1876
SspMI	CTAG	4 cut(s)	1353, 1448, 2373, 3011
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	7 cut(s)	240, 1453, 2668, 3184, 3205, 3253, 3503
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	8 cut(s)	156, 726, 1121, 1315, 2276, 2344, 2825, 3397
TaiI	ACGT	2 cut(s)	1027, 3115
TaqI	TCGA	6 cut(s)	93, 747, 910, 1652, 1870, 2110
TaqII	GACCGA	1 cut(s)	17
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	2 cut(s)	8, 1152
TfiI	GAWTC	7 cut(s)	294, 1028, 1111, 1174, 1421, 1804, 2877
TseFI	GTSAC	4 cut(s)	21, 971, 2895, 3121
TseI	GCWGC	8 cut(s)	49, 360, 755, 1124, 2060, 2710, 2764, 3617
Tsp45I	GTSAC	4 cut(s)	21, 971, 2895, 3121
TspGWI	ACGGA	2 cut(s)	993, 2376
Tth111I	GACNNNGTC	1 cut(s)	2593
VneI	GTGCAC	1 cut(s)	2481
VpaK11BI	GGWCC	7 cut(s)	29, 123, 1280, 1451, 1569, 1889, 3500
XagI	CCTNNNNNAGG	2 cut(s)	3189, 3335
XapI	RAATTY	4 cut(s)	1071, 1130, 2436, 2644
XceI	RCATGY	4 cut(s)	1326, 1567, 2316, 3494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1545
XhoI	CTCGAG	1 cut(s)	1651
XmnI	GAANNNNTTC	1 cut(s)	2612
XspI	CTAG	4 cut(s)	1353, 1448, 2373, 3011
Zsp2I	ATGCAT	2 cut(s)	1903, 3758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.