Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

48780904 .. 48789623

Gene Structure 8720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG355400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGATAATAGAGGTGGAGGTGCTGTGTTTGGAACTTTAGCTTATGTTTTTGCTCCACAGGTTACAAATCCAGCCACTGATCCTCTAAGGGAAGGGTTAGTTATGTCTCTTGAAGTCAACATTGGAAAGCGACGAAATATTTTGGAGATTGGACCTGAAAATGCATCGCAGATGAAAGAGTTCATCAGAAATGAAGCACCACAATCAGAGCAATTACAGACACCTGAGGCTAGCAAACCTGGTAGTCGTGCACTGGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

87

Amino Acids

9.4

Weight (kDa)

5.34

Isoelectric Point (pI)

71.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_syn_central	PF04898	18 - 59	2.5e-10	Glutamate synthase central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	2 cut(s)	41, 261
AluI	AGCT	2 cut(s)	41, 261
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	111
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	231, 262
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	173
BmtI	GCTAGC	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse1I	ACTGG	1 cut(s)	258
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	217
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	86, 225
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	75, 251
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	152
CsiI	ACCWGGT	1 cut(s)	238
CviJI	RGCY	4 cut(s)	41, 74, 230, 261
CviKI_1	RGCY	4 cut(s)	41, 74, 230, 261
DdeI	CTNAG	2 cut(s)	86, 225
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	166
FaiI	YATR	2 cut(s)	45, 104
FspBI	CTAG	2 cut(s)	231, 262
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	118, 251
Hpy188I	TCNGA	2 cut(s)	188, 208
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	118, 251
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	164, 251
HpyF3I	CTNAG	2 cut(s)	86, 225
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	44, 84, 168, 225, 237, 239, 252
LweI	GCATC	1 cut(s)	173
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	2 cut(s)	231, 262
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	1 cut(s)	212
MnlI	CCTC	4 cut(s)	5, 11, 93, 220
Mph1103I	ATGCAT	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	79
NheI	GCTAGC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	152
PstNI	CAGNNNCTG	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	8 cut(s)	16, 22, 43, 63, 157, 226, 241, 263
SexAI	ACCWGGT	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	173
SgeI	CNNG	9 cut(s)	71, 83, 122, 167, 236, 243, 251, 252, 260
SinI	GGWCC	1 cut(s)	152
Sse9I	AATT	1 cut(s)	212
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	231, 262
StyD4I	CCNGG	1 cut(s)	238
TasI	AATT	1 cut(s)	212
TscAI	CASTG	2 cut(s)	82, 258
TspDTI	ATGAA	3 cut(s)	172, 188, 207
TspRI	CASTG	2 cut(s)	82, 258
VneI	GTGCAC	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	2 cut(s)	231, 262
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.