Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Forward (+)

64484852 .. 64486379

Gene Structure 1528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTTCACAAGGGAAGGAGCCTACATTTTGCATGGGCGATGATATTCCATTGGCGATTTTATCTCAGAGACCACATATGCTATATGACTATTTCAAGCAACGGTTTGCGCAGGTTACAAATCCAGCCATTGATCCTCTAAGAGAAGGGTTAGTTATGTCTCTTGAAGTCAACATTGGAAAGCGACGAAATATTTTGGAGGTTATCTTGTCCAGTCCTGTGCTCAATGAAGGAGAACTTGAGTCATTGCTTAAGGACGCTCAGCTAAAAGCCCAATCTACTGCAGCTCAGCAAAATGAGGAGTTAAAGACAGTCAAAGCTGGTGCAGCTCAACAAAATGAAGAGTTAGAGGCAGTGAAGGTTAGAGCCGCTCAACAAAATGAAGAGTTGGAGGCACTAAAGGCAAGACAAAATCAGATTGACACACTTTTACTCAAATTGATGGCGCAGTTGTCCTTCCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

156

Amino Acids

17.33

Weight (kDa)

5.3

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_syn_central	PF04898	1 - 125	7.3e-35	Glutamate synthase central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
Acc36I	ACCTGC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	371
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	97, 167
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	4 cut(s)	265, 287, 320, 329
AluI	AGCT	4 cut(s)	265, 287, 320, 329
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	64, 165
AlwI	GGATC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	284, 326
AspLEI	GCGC	2 cut(s)	112, 448
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	296, 338
BccI	CCATC	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	64, 165
BfmI	CTRYAG	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	285, 327, 369
BlpI	GCTNAGC	2 cut(s)	261, 288
BlsI	GCNGC	3 cut(s)	286, 328, 370
BmiI	GGNNCC	1 cut(s)	21
Bpu1102I	GCTNAGC	2 cut(s)	261, 288
BpuEI	CTTGAG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	80, 275, 302
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	296, 338
BsgI	GTGCAG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	64, 165
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	133
Bsp1720I	GCTNAGC	2 cut(s)	261, 288
BspACI	CCGC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	79, 274, 301
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	105, 313
Bst6I	CTCTTC	2 cut(s)	336, 378
BstAFI	CTTAAG	1 cut(s)	251
BstDEI	CTNAG	4 cut(s)	66, 140, 261, 288
BstHHI	GCGC	2 cut(s)	112, 448
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	64, 165
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 401
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	296, 338
BtgZI	GCGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	1 cut(s)	103
CfoI	GCGC	2 cut(s)	112, 448
CseI	GACGC	1 cut(s)	266
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	9 cut(s)	5, 22, 128, 265, 272, 287, 320, 329, 368
CviKI_1	RGCY	9 cut(s)	5, 22, 128, 265, 272, 287, 320, 329, 368
DdeI	CTNAG	4 cut(s)	66, 140, 261, 288
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	336, 378
EarI	CTCTTC	2 cut(s)	336, 378
Eco31I	GGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	37
FaiI	YATR	6 cut(s)	35, 78, 80, 85, 87, 158
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	285, 327, 369
Fsp4HI	GCNGC	3 cut(s)	285, 327, 369
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	2 cut(s)	111, 447
GluI	GCNGC	3 cut(s)	285, 327, 369
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	112, 448
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	2 cut(s)	110, 446
HinP1I	GCGC	2 cut(s)	110, 446
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	69, 417
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	5 cut(s)	10, 140, 224, 352, 466
HpyCH4III	ACNGT	2 cut(s)	105, 313
HpyCH4V	TGCA	3 cut(s)	33, 284, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 401
HpyF3I	CTNAG	4 cut(s)	66, 140, 261, 288
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	2 cut(s)	110, 446
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	98, 138, 226, 231, 306
Lsp1109I	GCAGC	2 cut(s)	296, 338
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	135
MbiI	CCGCTC	1 cut(s)	371
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	353, 395
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	5 cut(s)	147, 193, 292, 343, 385
MseI	TTAA	2 cut(s)	252, 305
MspCI	CTTAAG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	326, 401
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	21
NsbI	TGCGCA	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	286, 328, 370
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	252, 305
SatI	GCNGC	3 cut(s)	285, 327, 369
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	7 cut(s)	117, 204, 267, 289, 322, 331, 363
SfcI	CTRYAG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	239, 251
SmoI	CTYRAG	2 cut(s)	239, 251
Sse9I	AATT	1 cut(s)	437
SsiI	CCGC	1 cut(s)	369
SspI	AATATT	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	105, 313
TasI	AATT	1 cut(s)	437
TauI	GCSGC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	252, 305
Tru9I	TTAA	2 cut(s)	252, 305
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	284, 326
TspDTI	ATGAA	3 cut(s)	243, 354, 396
TspRI	CASTG	1 cut(s)	360
Vha464I	CTTAAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.