Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005339.1

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

28509 .. 43296

Gene Structure 14788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005339.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3153 bp

atggcttcacaagggaaggagcctacattttgcatgggcgatgatattccattggcgattttatctcagagaccacatatgctatatgactatttcaagcaacggtttgcgcaggttacaaatccagccattgatcctctaagagaagggttagttatgtctcttgaagtcaacattggaaagcgacaaaatatcttggaggttggacctgaaaatgcatcgcaggttatcttgtccagtcctgtgctcaatgaaggagaacttgagtcattgcttaaggatgctcagctaaaaccccaagttttacctacattttttgatattcataaaggggtcgatggttccttggaaaaaacgctgtataagctttgtgaagctgctgatgatgctgttcaaaatggttgccaattgcttgttctgtctgaccggtctgatgagttggaagcaactcgtcctgccattccaatccttcttgctgttggtgctgttcatcagcatcttattcaaaatgggttgagaatgtcagcttctataatagtggatactgctcagtgctttagcactcatcaatttgcctgtttgattggatatggtgcaagtgctgtgtgtccatacttggcattggagacatgtcggcagtggcgtctgagtaataaaacagtaaatctaatgcggaacgggaagatgcctactgtaacgattgaacaggctcaaaagaacttctgcaaggctgttacggctggtcttcttaaaattctttccaaaatggggatctcgttgctttcaagttattgcggtgcacagatttttgagatttatggattggggaaggaggttgttgatcttgcattttgtgggagtatatcaagtattggtggattaacttttgatgagctggcgagggagactttgtccttctgggtgaaggctttctctgaggatacagctaaacgactggaaaattttggatttatacaattcagaccaggaggggagtatcatggaaacaacccagagatgtcgaaattgctacacaaagctgttcgacagaagaatgaaagtgccttttctgtttatcagcagcatttagctaaccggcctgttaatgttcttcgcgatctcattgagttcaaaagtgatcgttctccaatccctgtgggaaaggttgaacctgctgtatccattgttcaacgattctgcactggtgggatgtcacttggagctatttccagagaaactcatgaggctatagccattgcaatgaatagaataggtggaaagtccaattctggagaaggtggtgaggatcctattcgctggaaaccacttgcagatgttgttgatgggtattcaccgacccttccacatctaaaaggtcttcaaaatggagatactgctacaagtgctatcaagcaggttgcttcaggacgttttggagtcactccaaccttcttggtcaatgccgatcagctggaaatcaaaattgcacaaggggcgaagcctggtgaaggtggccaactgcctggtaaaaaagttagtgcatacattgcgaggttgagaaactcgaaacctggggttccacttatatctccacccccacaccatgacatttattctatagaggatcttgcccaattgatctatgaccttcatcaggtgaaccctaaagctaaggtgtcggtgaaacttgtggctgaagctggaattggcactgttgcttctggggttgcaaagggtaatgctgatatcatacagatatcagggcatgatggtggaactggggccagtcctataagttccattaagcatgctggtgggccctgggaactaggactcacagaaacacaccagacactcatagaaaatggacttagagaacgagtcattcttagagttgatggtggctttaaaagcggagttgatgtcctaatggctgcaactatgggtgctgatgagtacgggtttgggtctgtggcaatgattgctacaggttgtgttatggcccgcatttgccatacgaataattgtcctgttggtgtagccagccagagagaggaactgcgtgctcgatttcctggcgtgcctggtgatctagtcaacttttttttgtatgttgccgaggaggtaagaggcatgttggcccagttgggatatgagaagttagacgatataattggacggacagatttgtttagaccacgagatatatctctaatgaaaacacagcatcttgatctcggttatattctatcaaatgtcgggttaccaaaatggagcagtaccatgatcaggaatcaggatgttcatactaacggtcctgttctggatgatattttactaggagatccagagatatcagatgcaattgagaatgaaaaagttgttcagaagaccgtaaagatatacaatgtggatcgtgctgtttgtggacgtatagcaggggtggttgccaaaaagtacggtgacactggttttgctgggcagctgaacataacctttacagggagcgctgggcaatcatttggttgcttcttgactcctgggatgaatattcgacttgttggagaggcaaatgattatgtgggaaagagtatttcggggggagaattggttgtcactccggcagagaatacgggattttgccctgaggatgcaactattgtagggaatacctgcttgtatggtgcaactgggggtcaaatctttgttagagggaaagccggagagcgatttgctgtaagaaactctcttgcgcaagcagtggttgaaggcactggagaccactgttgtgaatacatgactggtggctgtgtagttgtacttggaaaagtgggtagaaatgttgctgctggaatgactggaggtctggcatactttcttgatgaggacgattccttcatccccaaggtaaatagggagattgtgaagatccagagagtcaatgctcctgtggggcagatgcagctaaagagccttattgaagcccatgttgaaaaaactggaagtggcaagggctctgttattctgaaagagtgggacaagtacttgccactcttctggcagctggttccccctagtgaagaagacactccagaagcgtgtgcagactatgtgagaacagctgctggtgaagtgactttgcagtctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

1050

Amino Acids

113.04

Weight (kDa)

5.97

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3142
Acc16I	TGCGCA	2 cut(s)	111, 2754
Acc36I	ACCTGC	5 cut(s)	103, 214, 1180, 1405, 2681
AccII	CGCG	1 cut(s)	1116
AciI	CCGC	4 cut(s)	673, 795, 1914, 2005
AclWI	GGATC	8 cut(s)	128, 779, 1301, 1314, 1632, 2339, 2421, 2923
AcoI	YGGCCR	1 cut(s)	1513
AcsI	RAATTY	2 cut(s)	753, 961
AcuI	CTGAAG	2 cut(s)	1407, 1716
AcyI	GRCGYC	1 cut(s)	643
AfaI	GTAC	5 cut(s)	1958, 2281, 2459, 2820, 3044
AfeI	AGCGCT	1 cut(s)	2509
AfiI	CCNNNNNNNGG	6 cut(s)	768, 1508, 1654, 2053, 2289, 2502
AflII	CTTAAG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	629
AgeI	ACCGGT	1 cut(s)	426
AhdI	GACNNNNNGTC	1 cut(s)	2862
AjnI	CCWGG	8 cut(s)	985, 1501, 1522, 1570, 1820, 2074, 2083, 2539
AjuI	GAANNNNNNNTTGG	6 cut(s)	159, 191, 399, 431, 1689, 1721
AleI	CACNNNNGTG	1 cut(s)	2787
Alw21I	GWGCWC	3 cut(s)	249, 802, 2068
Alw26I	GTCTC	5 cut(s)	64, 165, 620, 899, 2772
Alw44I	GTGCAC	1 cut(s)	798
AlwI	GGATC	8 cut(s)	128, 779, 1301, 1314, 1632, 2339, 2421, 2923
AlwNI	CAGNNNCTG	1 cut(s)	3125
Aor51HI	AGCGCT	1 cut(s)	2509
AoxI	GGCC	6 cut(s)	1097, 1513, 1782, 1817, 2001, 2139
ApaI	GGGCCC	1 cut(s)	1821
ApaLI	GTGCAC	1 cut(s)	798
ApeKI	GCWGC	8 cut(s)	377, 1081, 1934, 2482, 2846, 2962, 3061, 3122
ApoI	RAATTY	2 cut(s)	753, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	2456, 2488
AsiGI	ACCGGT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	929
AspLEI	GCGC	3 cut(s)	112, 2510, 2755
AspS9I	GGNCC	7 cut(s)	206, 1782, 1817, 1818, 2002, 2140, 2315
AsuHPI	GGTGA	9 cut(s)	934, 1313, 1344, 1517, 1669, 1693, 2099, 2474, 3140
AvaII	GGWCC	2 cut(s)	206, 2315
AxyI	CCTNAGG	1 cut(s)	2646
BaeGI	GKGCMC	2 cut(s)	802, 1821
BalI	TGGCCA	1 cut(s)	1515
BamHI	GGATCC	1 cut(s)	1306
BanII	GRGCYC	2 cut(s)	1821, 3017
BauI	CACGAG	1 cut(s)	2199
BbsI	GAAGAC	4 cut(s)	737, 1370, 2396, 3090
Bbv12I	GWGCWC	3 cut(s)	249, 802, 2068
BbvI	GCAGC	8 cut(s)	364, 1093, 1921, 2494, 2833, 2974, 3073, 3109
BccI	CCATC	4 cut(s)	332, 1337, 1763, 1892
BceAI	ACGGC	1 cut(s)	753
BciT130I	CCWGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
BciVI	GTATCC	3 cut(s)	535, 934, 1189
BclI	TGATCA	1 cut(s)	2286
BcoDI	GTCTC	5 cut(s)	64, 165, 620, 899, 2772
BfaI	CTAG	4 cut(s)	1829, 2093, 2339, 3075
BfmI	CTRYAG	3 cut(s)	1248, 1617, 1986
BfoI	RGCGCY	1 cut(s)	2511
BfrI	CTTAAG	1 cut(s)	275
BfuAI	ACCTGC	5 cut(s)	103, 214, 1180, 1405, 2681
BfuI	GTATCC	3 cut(s)	535, 934, 1189
BisI	GCNGC	8 cut(s)	378, 1082, 1935, 2483, 2847, 2963, 3062, 3123
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	8 cut(s)	379, 1083, 1936, 2484, 2848, 2964, 3063, 3124
BmcAI	AGTACT	1 cut(s)	3044
Bme1390I	CCNGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
Bme18I	GGWCC	2 cut(s)	206, 2315
BmeRI	GACNNNNNGTC	1 cut(s)	2862
BmgT120I	GGNCC	7 cut(s)	206, 1782, 1817, 1818, 2002, 2140, 2315
BmiI	GGNNCC	7 cut(s)	21, 343, 1308, 1578, 1783, 1819, 3069
BmrFI	CCNGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
BmrI	ACTGGG	3 cut(s)	1788, 2137, 2700
BmsI	GCATC	9 cut(s)	227, 271, 376, 505, 675, 2236, 2350, 2641, 2949
BmuI	ACTGGG	3 cut(s)	1788, 2137, 2700
BpiI	GAAGAC	4 cut(s)	737, 1370, 2396, 3090
BpmI	CTGGAG	4 cut(s)	1311, 2796, 2880, 3075
Bpu10I	CCTNAGC	1 cut(s)	1671
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	643
BsaI	GGTCTC	2 cut(s)	64, 2772
BsaJI	CCNNGG	7 cut(s)	345, 1571, 1820, 1821, 2118, 2540, 2904
BsaWI	WCCGGW	1 cut(s)	426
BsaXI	ACNNNNNCTCC	6 cut(s)	896, 926, 1908, 1938, 2595, 2625
Bsc4I	CCNNNNNNNGG	6 cut(s)	768, 1508, 1654, 2053, 2289, 2502
Bse118I	RCCGGY	2 cut(s)	426, 1095
Bse21I	CCTNAGG	1 cut(s)	2646
Bse3DI	GCAATG	5 cut(s)	269, 1254, 1266, 1545, 1983
BseBI	CCWGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
BseDI	CCNNGG	7 cut(s)	345, 1571, 1820, 1821, 2118, 2540, 2904
BseGI	GGATG	7 cut(s)	286, 1215, 2305, 2332, 2550, 2656, 2898
BseLI	CCNNNNNNNGG	6 cut(s)	768, 1508, 1654, 2053, 2289, 2502
BseMI	GCAATG	5 cut(s)	269, 1254, 1266, 1545, 1983
BseMII	CTCAG	6 cut(s)	80, 299, 563, 638, 927, 2637
BseRI	GAGGAG	1 cut(s)	2135
BseSI	GKGCMC	2 cut(s)	802, 1821
BseXI	GCAGC	8 cut(s)	364, 1093, 1921, 2494, 2833, 2974, 3073, 3109
BseYI	CCCAGC	2 cut(s)	2477, 2510
BsgI	GTGCAG	2 cut(s)	1183, 3123
Bsh1236I	CGCG	1 cut(s)	1116
BshFI	GGCC	6 cut(s)	1099, 1515, 1784, 1819, 2003, 2141
BshTI	ACCGGT	1 cut(s)	426
BsiHKAI	GWGCWC	3 cut(s)	249, 802, 2068
BsiSI	CCGG	4 cut(s)	427, 1096, 2621, 2721
BslFI	GGGAC	1 cut(s)	3050
BslI	CCNNNNNNNGG	6 cut(s)	768, 1508, 1654, 2053, 2289, 2502
BsmAI	GTCTC	5 cut(s)	64, 165, 620, 899, 2772
BsmFI	GGGAC	1 cut(s)	3050
BsnI	GGCC	6 cut(s)	1099, 1515, 1784, 1819, 2003, 2141
Bso31I	GGTCTC	2 cut(s)	64, 2772
Bsp120I	GGGCCC	1 cut(s)	1817
Bsp1286I	GDGCHC	5 cut(s)	249, 802, 1821, 2068, 3017
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp68I	TCGCGA	1 cut(s)	1116
BspACI	CCGC	4 cut(s)	673, 795, 1914, 2005
BspANI	GGCC	6 cut(s)	1099, 1515, 1784, 1819, 2003, 2141
BspCNI	CTCAG	6 cut(s)	79, 298, 562, 639, 928, 2638
BspFNI	CGCG	1 cut(s)	1116
BspHI	TCATGA	1 cut(s)	1240
BspLI	GGNNCC	7 cut(s)	21, 343, 1308, 1578, 1783, 1819, 3069
BspMI	ACCTGC	5 cut(s)	103, 214, 1180, 1405, 2681
BspPI	GGATC	8 cut(s)	128, 779, 1301, 1314, 1632, 2339, 2421, 2923
BspTI	CTTAAG	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	64, 2772
BsrDI	GCAATG	5 cut(s)	269, 1254, 1266, 1545, 1983
BsrFI	RCCGGY	2 cut(s)	426, 1095
BssAI	RCCGGY	2 cut(s)	426, 1095
BssECI	CCNNGG	7 cut(s)	345, 1571, 1820, 1821, 2118, 2540, 2904
BssNI	GRCGYC	1 cut(s)	643
BssSI	CACGAG	1 cut(s)	2199
BssT1I	CCWWGG	2 cut(s)	345, 2904
Bst2BI	CACGAG	1 cut(s)	2199
Bst2UI	CCWGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
Bst4CI	ACNGT	8 cut(s)	105, 661, 694, 1714, 2315, 2395, 2462, 2786
Bst6I	CTCTTC	1 cut(s)	3059
BstACI	GRCGYC	1 cut(s)	643
BstAFI	CTTAAG	1 cut(s)	275
BstAPI	GCANNNNNTGC	2 cut(s)	1547, 1982
BstC8I	GCNNGC	7 cut(s)	897, 1809, 2005, 2044, 2064, 2081, 2757
BstEII	GGTNACC	1 cut(s)	2262
BstENI	CCTNNNNNAGG	2 cut(s)	1506, 1652
BstF5I	GGATG	7 cut(s)	286, 1215, 2305, 2332, 2550, 2656, 2898
BstFNI	CGCG	1 cut(s)	1116
BstH2I	RGCGCY	1 cut(s)	2511
BstHHI	GCGC	3 cut(s)	112, 2510, 2755
BstMAI	GTCTC	5 cut(s)	64, 165, 620, 899, 2772
BstNI	CCWGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
BstNSI	RCATGY	3 cut(s)	633, 1811, 2137
BstPI	GGTNACC	1 cut(s)	2262
BstSCI	CCNGG	8 cut(s)	985, 1501, 1522, 1570, 1820, 2074, 2083, 2539
BstSFI	CTRYAG	3 cut(s)	1248, 1617, 1986
BstSLI	GKGCMC	2 cut(s)	802, 1821
BstUI	CGCG	1 cut(s)	1116
BstV1I	GCAGC	8 cut(s)	364, 1093, 1921, 2494, 2833, 2974, 3073, 3109
BstV2I	GAAGAC	4 cut(s)	737, 1370, 2396, 3090
BstX2I	RGATCY	5 cut(s)	771, 1306, 1624, 2344, 2928
BstXI	CCANNNNNNTGG	2 cut(s)	1523, 3057
BstYI	RGATCY	5 cut(s)	771, 1306, 1624, 2344, 2928
Bsu36I	CCTNAGG	1 cut(s)	2646
BsuI	GTATCC	3 cut(s)	535, 934, 1189
BsuRI	GGCC	6 cut(s)	1099, 1515, 1784, 1819, 2003, 2141
BtgZI	GCGATG	2 cut(s)	54, 204
BtsCI	GGATG	7 cut(s)	286, 1215, 2305, 2332, 2550, 2656, 2898
BtsI	GCAGTG	2 cut(s)	644, 2766
BtsIMutI	CAGTG	8 cut(s)	557, 644, 1200, 1710, 2466, 2766, 2772, 2782
BtuMI	TCGCGA	1 cut(s)	1116
BveI	ACCTGC	5 cut(s)	103, 214, 1180, 1405, 2681
Cac8I	GCNNGC	7 cut(s)	897, 1809, 2005, 2044, 2064, 2081, 2757
CaiI	CAGNNNCTG	1 cut(s)	3125
CciI	TCATGA	1 cut(s)	1240
CfoI	GCGC	3 cut(s)	112, 2510, 2755
Cfr10I	RCCGGY	2 cut(s)	426, 1095
Cfr13I	GGNCC	7 cut(s)	206, 1782, 1817, 1818, 2002, 2140, 2315
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	5 cut(s)	1957, 2280, 2458, 2819, 3043
CspAI	ACCGGT	1 cut(s)	426
CspCI	CAANNNNNGTGG	2 cut(s)	1137, 1172
CviQI	GTAC	5 cut(s)	1957, 2280, 2458, 2819, 3043
DraI	TTTAAA	1 cut(s)	1909
DrdI	GACNNNNNNGTC	1 cut(s)	3142
DriI	GACNNNNNGTC	1 cut(s)	2862
DseDI	GACNNNNNNGTC	1 cut(s)	3142
EaeI	YGGCCR	1 cut(s)	1513
Eam1104I	CTCTTC	1 cut(s)	3059
Eam1105I	GACNNNNNGTC	1 cut(s)	2862
EarI	CTCTTC	1 cut(s)	3059
Eco130I	CCWWGG	2 cut(s)	345, 2904
Eco24I	GRGCYC	2 cut(s)	1821, 3017
Eco31I	GGTCTC	2 cut(s)	64, 2772
Eco32I	GATATC	3 cut(s)	1747, 1758, 2355
Eco47I	GGWCC	2 cut(s)	206, 2315
Eco47III	AGCGCT	1 cut(s)	2509
Eco57I	CTGAAG	2 cut(s)	1407, 1716
Eco81I	CCTNAGG	1 cut(s)	2646
Eco91I	GGTNACC	1 cut(s)	2262
EcoNI	CCTNNNNNAGG	2 cut(s)	1506, 1652
EcoO109I	RGGNCCY	1 cut(s)	1818
EcoO65I	GGTNACC	1 cut(s)	2262
EcoRII	CCWGG	8 cut(s)	985, 1501, 1522, 1570, 1820, 2074, 2083, 2539
EcoRV	GATATC	3 cut(s)	1747, 1758, 2355
EcoT14I	CCWWGG	2 cut(s)	345, 2904
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	1821, 3017
ErhI	CCWWGG	2 cut(s)	345, 2904
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	3050
FauI	CCCGC	1 cut(s)	2012
FauNDI	CATATG	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	2286
Fnu4HI	GCNGC	8 cut(s)	378, 1082, 1935, 2483, 2847, 2963, 3062, 3123
FokI	GGATG	7 cut(s)	293, 1222, 2312, 2339, 2557, 2663, 2885
FriOI	GRGCYC	2 cut(s)	1821, 3017
Fsp4HI	GCNGC	8 cut(s)	378, 1082, 1935, 2483, 2847, 2963, 3062, 3123
FspBI	CTAG	4 cut(s)	1829, 2093, 2339, 3075
FspI	TGCGCA	2 cut(s)	111, 2754
GlaI	GCGC	3 cut(s)	111, 2509, 2754
GluI	GCNGC	8 cut(s)	378, 1082, 1935, 2483, 2847, 2963, 3062, 3123
GsaI	CCCAGC	2 cut(s)	2481, 2514
GsuI	CTGGAG	4 cut(s)	1311, 2796, 2880, 3075
HaeII	RGCGCY	1 cut(s)	2511
HaeIII	GGCC	6 cut(s)	1099, 1515, 1784, 1819, 2003, 2141
HapII	CCGG	4 cut(s)	427, 1096, 2621, 2721
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	3 cut(s)	112, 2510, 2755
Hin1I	GRCGYC	1 cut(s)	643
Hin6I	GCGC	3 cut(s)	110, 2508, 2753
HinP1I	GCGC	3 cut(s)	110, 2508, 2753
HincII	GTYRAC	2 cut(s)	172, 2098
HindII	GTYRAC	2 cut(s)	172, 2098
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	9 cut(s)	266, 1194, 1437, 1833, 1881, 2293, 2536, 2891, 2937
HpaII	CCGG	4 cut(s)	427, 1096, 2621, 2721
HphI	GGTGA	9 cut(s)	934, 1313, 1344, 1517, 1669, 1693, 2099, 2474, 3140
Hpy166II	GTNNAC	5 cut(s)	172, 800, 1660, 2098, 2429
Hpy188I	TCNGA	9 cut(s)	69, 424, 433, 648, 937, 983, 2359, 2388, 3027
Hpy8I	GTNNAC	5 cut(s)	172, 800, 1660, 2098, 2429
HpyCH4III	ACNGT	8 cut(s)	105, 661, 694, 1714, 2315, 2395, 2462, 2786
HpyCH4IV	ACGT	2 cut(s)	1429, 2431
HpySE526I	ACGT	2 cut(s)	1429, 2431
Hsp92I	GRCGYC	1 cut(s)	643
HspAI	GCGC	3 cut(s)	110, 2508, 2753
Ksp22I	TGATCA	1 cut(s)	2286
LmnI	GCTCC	5 cut(s)	19, 1220, 2274, 2505, 2950
Lsp1109I	GCAGC	8 cut(s)	364, 1093, 1921, 2494, 2833, 2974, 3073, 3109
LweI	GCATC	9 cut(s)	227, 271, 376, 505, 675, 2236, 2350, 2641, 2949
MaeI	CTAG	4 cut(s)	1829, 2093, 2339, 3075
MaeII	ACGT	2 cut(s)	1429, 2431
MaeIII	GTNAC	9 cut(s)	115, 694, 733, 1212, 1438, 2262, 2462, 2614, 3133
MfeI	CAATTG	3 cut(s)	407, 1634, 2364
MflI	RGATCY	5 cut(s)	771, 1306, 1624, 2344, 2928
MhlI	GDGCHC	5 cut(s)	249, 802, 1821, 2068, 3017
MlsI	TGGCCA	1 cut(s)	1515
MluNI	TGGCCA	1 cut(s)	1515
MlyI	GAGTC	6 cut(s)	275, 1446, 1827, 1890, 2530, 2946
MmeI	TCCRAC	4 cut(s)	184, 420, 1469, 2542
Mox20I	TGGCCA	1 cut(s)	1515
Mph1103I	ATGCAT	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	929
MscI	TGGCCA	1 cut(s)	1515
MseI	TTAA	6 cut(s)	276, 750, 881, 1104, 1803, 1908
MslI	CAYNNNNRTG	4 cut(s)	1259, 1770, 1812, 2787
Msp20I	TGGCCA	1 cut(s)	1515
MspA1I	CMGCKG	4 cut(s)	1471, 2485, 3064, 3122
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	4 cut(s)	427, 1096, 2621, 2721
MspR9I	CCNGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
MunI	CAATTG	3 cut(s)	407, 1634, 2364
MvaI	CCWGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
MvnI	CGCG	1 cut(s)	1116
NdeI	CATATG	1 cut(s)	78
NlaIV	GGNNCC	7 cut(s)	21, 343, 1308, 1578, 1783, 1819, 3069
NmeAIII	GCCGAG	1 cut(s)	2143
NmuCI	GTSAC	5 cut(s)	1212, 1438, 2462, 2614, 3133
NruI	TCGCGA	1 cut(s)	1116
NsbI	TGCGCA	2 cut(s)	111, 2754
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	3 cut(s)	633, 1811, 2137
OliI	CACNNNNGTG	1 cut(s)	2787
PaeI	GCATGC	1 cut(s)	1811
PagI	TCATGA	1 cut(s)	1240
PasI	CCCWGGG	1 cut(s)	1821
PciI	ACATGT	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	3 cut(s)	1194, 2293, 2891
PflFI	GACNNNGTC	1 cut(s)	910
PinAI	ACCGGT	1 cut(s)	426
PkrI	GCNGC	8 cut(s)	379, 1083, 1936, 2484, 2848, 2964, 3063, 3124
PleI	GAGTC	6 cut(s)	274, 1445, 1827, 1889, 2530, 2945
PpsI	GAGTC	6 cut(s)	274, 1445, 1827, 1889, 2530, 2945
PscI	ACATGT	1 cut(s)	629
Psp6I	CCWGG	8 cut(s)	985, 1501, 1522, 1570, 1820, 2074, 2083, 2539
PspEI	GGTNACC	1 cut(s)	2262
PspFI	CCCAGC	2 cut(s)	2477, 2510
PspGI	CCWGG	8 cut(s)	985, 1501, 1522, 1570, 1820, 2074, 2083, 2539
PspN4I	GGNNCC	7 cut(s)	21, 343, 1308, 1578, 1783, 1819, 3069
PspOMI	GGGCCC	1 cut(s)	1817
PspPI	GGNCC	7 cut(s)	206, 1782, 1817, 1818, 2002, 2140, 2315
PsrI	GAACNNNNNNTAC	2 cut(s)	1170, 1202
PstNI	CAGNNNCTG	1 cut(s)	3125
PsuI	RGATCY	5 cut(s)	771, 1306, 1624, 2344, 2928
PsyI	GACNNNGTC	1 cut(s)	910
PvuII	CAGCTG	4 cut(s)	1471, 2485, 3064, 3122
RruI	TCGCGA	1 cut(s)	1116
RsaI	GTAC	5 cut(s)	1958, 2281, 2459, 2820, 3044
RsaNI	GTAC	5 cut(s)	1957, 2280, 2458, 2819, 3043
RseI	CAYNNNNRTG	4 cut(s)	1259, 1770, 1812, 2787
SaqAI	TTAA	6 cut(s)	276, 750, 881, 1104, 1803, 1908
SatI	GCNGC	8 cut(s)	378, 1082, 1935, 2483, 2847, 2963, 3062, 3123
Sau96I	GGNCC	7 cut(s)	206, 1782, 1817, 1818, 2002, 2140, 2315
ScaI	AGTACT	1 cut(s)	3044
SchI	GAGTC	6 cut(s)	275, 1446, 1827, 1890, 2530, 2946
ScrFI	CCNGG	8 cut(s)	987, 1503, 1524, 1572, 1822, 2076, 2085, 2541
SduI	GDGCHC	5 cut(s)	249, 802, 1821, 2068, 3017
SfaNI	GCATC	9 cut(s)	227, 271, 376, 505, 675, 2236, 2350, 2641, 2949
SfcI	CTRYAG	3 cut(s)	1248, 1617, 1986
SinI	GGWCC	2 cut(s)	206, 2315
SmiMI	CAYNNNNRTG	4 cut(s)	1259, 1770, 1812, 2787
SmlI	CTYRAG	2 cut(s)	263, 275
SmoI	CTYRAG	2 cut(s)	263, 275
SphI	GCATGC	1 cut(s)	1811
SsiI	CCGC	4 cut(s)	673, 795, 1914, 2005
SspI	AATATT	1 cut(s)	2551
SspMI	CTAG	4 cut(s)	1829, 2093, 2339, 3075
StyD4I	CCNGG	8 cut(s)	985, 1501, 1522, 1570, 1820, 2074, 2083, 2539
StyI	CCWWGG	2 cut(s)	345, 2904
TaaI	ACNGT	8 cut(s)	105, 661, 694, 1714, 2315, 2395, 2462, 2786
TaiI	ACGT	2 cut(s)	1432, 2434
TaqI	TCGA	6 cut(s)	336, 1022, 1045, 1565, 2068, 2554
TatI	WGTACW	2 cut(s)	2818, 3042
TfiI	GAWTC	3 cut(s)	1194, 2293, 2891
Tru1I	TTAA	6 cut(s)	276, 750, 881, 1104, 1803, 1908
Tru9I	TTAA	6 cut(s)	276, 750, 881, 1104, 1803, 1908
TscAI	CASTG	8 cut(s)	557, 644, 1207, 1717, 2473, 2766, 2779, 2789
TseFI	GTSAC	5 cut(s)	1212, 1438, 2462, 2614, 3133
TseI	GCWGC	8 cut(s)	377, 1081, 1934, 2482, 2846, 2962, 3061, 3122
Tsp45I	GTSAC	5 cut(s)	1212, 1438, 2462, 2614, 3133
TspGWI	ACGGA	1 cut(s)	2194
TspRI	CASTG	8 cut(s)	557, 644, 1207, 1717, 2473, 2766, 2779, 2789
Tth111I	GACNNNGTC	1 cut(s)	910
Vha464I	CTTAAG	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	798
VpaK11BI	GGWCC	2 cut(s)	206, 2315
XagI	CCTNNNNNAGG	2 cut(s)	1506, 1652
XapI	RAATTY	2 cut(s)	753, 961
XceI	RCATGY	3 cut(s)	633, 1811, 2137
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	4 cut(s)	1829, 2093, 2339, 3075
ZrmI	AGTACT	1 cut(s)	3044
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.