Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

27030331 .. 27032469

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0257500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACTAAGCTTACAAGTTATTTTGCCACAGTTTTATTCATTTTTATACATATTCTATGCCAATCATCTGCTTCTGGTGATGGGACGACTACAAGTACTTATAATGTTTTGGAGTTTGGAGCTAAGAGCAACGGTGTAACCGATTCAACCCAAGCTTTTCTCAATGCTTGGTTAGTAGCCTGTGGTTCCTCCGCAGATTCCACCGAGATATATGTACCAAAGGGGAGCTTTGAAGGAGTTAGCGGGATAACCATTGTCGGAGGAGCACTTGATGCCAAAGGTTGCGCCTTATGGGCTTGCAAATTAAGTACCAAAACCACCAGTTGTCCTGATGGAGCCACGACTTTGAGTTTTACAAACTCCAAGGACATTAGAGTTGAAGGACTAATGTCACTGAACAGCCCAATGTTTCACATTGTGATAAACGGCTGCCAAGATGTACTGATTCAAGGCGTCAAAGTTATTGCCGCTGGAAATAGCCCAAACACTGATGGTATGTCCAGTTTTCCAGAACTGTTGCAATCTTCGACACCTCCATCAAAACTGGGGACGATTGCGTCTCTATTGGCCCCGGCACCAAGGACTTGTGGATGGAACGCATATCATGCGGACCTGGGCATGGCATTAGGGAGCCTGGCCAAAGACTTGGAAGAGGAAGGTGTCCAAAATGTAACACTCAAAAATGCGATTTTCAAGGGTACCACAAATGGTCTCAGGATAAAGTCGTGGGCAAGACCCAGCACGGGGTTTGTGCAAGATGTCCGATTCCTTGATGTTGAAATGATTAAAGTCCAAAACCCCATTGTAATTGACCAGAATTACTGTCCACCCAACCTCAACTGTCCTGGTCAGGTATCAGGTGTCAAATTTAGCGACGTGTTGTACCAGAACATTCGAGGGACGTCAGCAACAGCAGTCGCAATAAAATTTGATTGTCTTCATGGTCCTGAGTTCAAAGAACATTTGGCAAACTCGGATTGGGAAATTCCAGCTGTGTTTGAGGGAACGTTGAGAGTCAATGGTTCTGGTAATATGAATATTACTCTTCATCAAGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

353

Amino Acids

37.55

Weight (kDa)

5.69

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	76 - 166	2.2e-14	Glycosyl hydrolases family 28
Glyco_hydro_28	PF00295	206 - 315	1.1e-27	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AasI	GACNNNNNNGTC	1 cut(s)	556
AatII	GACGTC	1 cut(s)	905
Acc65I	GGTACC	1 cut(s)	698
AccB1I	GGYRCC	2 cut(s)	574, 698
AciI	CCGC	4 cut(s)	192, 243, 468, 608
AclI	AACGTT	1 cut(s)	1007
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	3 cut(s)	866, 926, 984
AcyI	GRCGYC	2 cut(s)	453, 902
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	6 cut(s)	97, 216, 310, 441, 700, 884
AfiI	CCNNNNNNNGG	3 cut(s)	619, 743, 744
AflIII	ACRYGT	1 cut(s)	876
AgsI	TTSAA	7 cut(s)	147, 233, 380, 449, 694, 779, 955
AjiI	CACGTC	1 cut(s)	877
AjnI	CCWGG	3 cut(s)	612, 633, 844
AluBI	AGCT	6 cut(s)	10, 122, 155, 228, 992, 1055
AluI	AGCT	6 cut(s)	10, 122, 155, 228, 992, 1055
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	564, 716
AoxI	GGCC	2 cut(s)	567, 636
ApeKI	GCWGC	1 cut(s)	429
ApoI	RAATTY	3 cut(s)	866, 926, 984
Asp718I	GGTACC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	568, 610, 944
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	610, 944
BalI	TGGCCA	1 cut(s)	638
BanI	GGYRCC	2 cut(s)	574, 698
BbsI	GAAGAC	1 cut(s)	929
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	5 cut(s)	74, 326, 485, 544, 585
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	3 cut(s)	614, 635, 846
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	564, 716
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	430, 468
BlsI	GCNGC	2 cut(s)	431, 469
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	4 cut(s)	572, 614, 635, 846
Bme18I	GGWCC	2 cut(s)	610, 944
BmgBI	CACGTC	1 cut(s)	877
BmgT120I	GGNCC	3 cut(s)	568, 610, 944
BmiI	GGNNCC	6 cut(s)	187, 337, 570, 576, 632, 700
BmrFI	CCNGG	4 cut(s)	572, 614, 635, 846
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	554
BoxI	GACNNNNGTC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	572
BsaHI	GRCGYC	2 cut(s)	453, 902
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	4 cut(s)	363, 570, 578, 613
Bsc4I	CCNNNNNNNGG	3 cut(s)	619, 743, 744
Bse1I	ACTGG	3 cut(s)	321, 501, 549
BseBI	CCWGG	3 cut(s)	614, 635, 846
BseDI	CCNNGG	4 cut(s)	363, 570, 578, 613
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	3 cut(s)	619, 743, 744
BseMII	CTCAG	2 cut(s)	727, 939
BseNI	ACTGG	3 cut(s)	321, 501, 549
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	416
BseYI	CCCAGC	1 cut(s)	737
BshFI	GGCC	2 cut(s)	569, 638
BshNI	GGYRCC	2 cut(s)	574, 698
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	3 cut(s)	97, 562, 913
BslI	CCNNNNNNNGG	3 cut(s)	619, 743, 744
BsmAI	GTCTC	2 cut(s)	564, 716
BsmBI	CGTCTC	1 cut(s)	564
BsmFI	GGGAC	3 cut(s)	97, 562, 913
BsnI	GGCC	2 cut(s)	569, 638
Bso31I	GGTCTC	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	268
BspACI	CCGC	4 cut(s)	192, 243, 468, 608
BspANI	GGCC	2 cut(s)	569, 638
BspCNI	CTCAG	2 cut(s)	726, 940
BspLI	GGNNCC	6 cut(s)	187, 337, 570, 576, 632, 700
BspT107I	GGYRCC	2 cut(s)	574, 698
BspTNI	GGTCTC	1 cut(s)	716
BsrI	ACTGG	3 cut(s)	321, 501, 549
BssECI	CCNNGG	4 cut(s)	363, 570, 578, 613
BssNI	GRCGYC	2 cut(s)	453, 902
BssT1I	CCWWGG	2 cut(s)	363, 578
Bst2UI	CCWGG	3 cut(s)	614, 635, 846
Bst4CI	ACNGT	5 cut(s)	31, 134, 516, 824, 842
Bst6I	CTCTTC	2 cut(s)	645, 1050
BstACI	GRCGYC	2 cut(s)	453, 902
BstAPI	GCANNNNNTGC	2 cut(s)	272, 605
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	4 cut(s)	6, 123, 713, 948
BstF5I	GGATG	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	287
BstMAI	GTCTC	2 cut(s)	564, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 293, 605
BstNI	CCWGG	3 cut(s)	614, 635, 846
BstPAI	GACNNNNGTC	1 cut(s)	388
BstSCI	CCNGG	4 cut(s)	570, 612, 633, 844
BstV1I	GCAGC	1 cut(s)	416
BstV2I	GAAGAC	1 cut(s)	929
BstXI	CCANNNNNNTGG	1 cut(s)	646
BsuRI	GGCC	2 cut(s)	569, 638
BtrI	CACGTC	1 cut(s)	877
BtsCI	GGATG	1 cut(s)	596
BtsIMutI	CAGTG	2 cut(s)	392, 486
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	568, 610, 944
CseI	GACGC	2 cut(s)	442, 546
Csp6I	GTAC	6 cut(s)	96, 215, 309, 440, 699, 883
CviAII	CATG	3 cut(s)	605, 619, 941
CviQI	GTAC	6 cut(s)	96, 215, 309, 440, 699, 883
DdeI	CTNAG	4 cut(s)	6, 123, 713, 948
DraIII	CACNNNGTG	1 cut(s)	418
DrdI	GACNNNNNNGTC	1 cut(s)	556
DseDI	GACNNNNNNGTC	1 cut(s)	556
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	2 cut(s)	645, 1050
EarI	CTCTTC	2 cut(s)	645, 1050
Eco130I	CCWWGG	2 cut(s)	363, 578
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	2 cut(s)	610, 944
EcoRII	CCWGG	3 cut(s)	612, 633, 844
EcoT14I	CCWWGG	2 cut(s)	363, 578
ErhI	CCWWGG	2 cut(s)	363, 578
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	3 cut(s)	608, 622, 944
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	3 cut(s)	97, 562, 913
FatI	CATG	3 cut(s)	604, 618, 940
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	430, 468
FokI	GGATG	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	430, 468
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	430, 468
GsaI	CCCAGC	1 cut(s)	741
HaeIII	GGCC	2 cut(s)	569, 638
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	2 cut(s)	442, 546
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	2 cut(s)	453, 902
Hin1II	CATG	3 cut(s)	608, 622, 944
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	3 cut(s)	8, 153, 1053
HinfI	GANTC	5 cut(s)	143, 197, 445, 765, 1014
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	827
Hpy188I	TCNGA	3 cut(s)	260, 764, 976
Hpy188III	TCNNGA	4 cut(s)	329, 509, 715, 947
Hpy8I	GTNNAC	1 cut(s)	827
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	3 cut(s)	227, 374, 650
HpyCH4III	ACNGT	5 cut(s)	31, 134, 516, 824, 842
HpyCH4IV	ACGT	3 cut(s)	876, 902, 1007
HpyCH4V	TGCA	3 cut(s)	300, 520, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 293, 605
HpyF3I	CTNAG	4 cut(s)	6, 123, 713, 948
HpySE526I	ACGT	3 cut(s)	876, 902, 1007
Hsp92I	GRCGYC	2 cut(s)	453, 902
Hsp92II	CATG	3 cut(s)	608, 622, 944
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	1 cut(s)	702
LmnI	GCTCC	5 cut(s)	119, 225, 263, 335, 630
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	3 cut(s)	876, 902, 1007
MaeIII	GTNAC	3 cut(s)	136, 390, 670
MboII	GAAGA	4 cut(s)	516, 662, 929, 1037
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	6 cut(s)	302, 807, 817, 866, 926, 984
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	1 cut(s)	1023
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	7 cut(s)	199, 254, 543, 646, 845, 890, 994
Mox20I	TGGCCA	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	3 cut(s)	305, 786, 1060
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	2 cut(s)	470, 992
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	4 cut(s)	572, 614, 635, 846
MvaI	CCWGG	3 cut(s)	614, 635, 846
MwoI	GCNNNNNNNGC	3 cut(s)	272, 293, 605
NciI	CCSGG	1 cut(s)	572
NlaIII	CATG	3 cut(s)	608, 622, 944
NlaIV	GGNNCC	6 cut(s)	187, 337, 570, 576, 632, 700
NmuCI	GTSAC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	143, 197, 445, 765
PkrI	GCNGC	2 cut(s)	431, 469
PleI	GAGTC	1 cut(s)	1022
PpsI	GAGTC	1 cut(s)	1022
PshAI	GACNNNNGTC	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	1007
Psp6I	CCWGG	3 cut(s)	612, 633, 844
PspFI	CCCAGC	1 cut(s)	737
PspGI	CCWGG	3 cut(s)	612, 633, 844
PspN4I	GGNNCC	6 cut(s)	187, 337, 570, 576, 632, 700
PspPI	GGNCC	3 cut(s)	568, 610, 944
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	6 cut(s)	97, 216, 310, 441, 700, 884
RsaNI	GTAC	6 cut(s)	96, 215, 309, 440, 699, 883
SaqAI	TTAA	3 cut(s)	305, 786, 1060
SatI	GCNGC	2 cut(s)	430, 468
Sau96I	GGNCC	3 cut(s)	568, 610, 944
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	1023
ScrFI	CCNGG	4 cut(s)	572, 614, 635, 846
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	262
SinI	GGWCC	2 cut(s)	610, 944
Sse9I	AATT	6 cut(s)	302, 807, 817, 866, 926, 984
SsiI	CCGC	4 cut(s)	192, 243, 468, 608
SspI	AATATT	1 cut(s)	1039
StyD4I	CCNGG	4 cut(s)	570, 612, 633, 844
StyI	CCWWGG	2 cut(s)	363, 578
TaaI	ACNGT	5 cut(s)	31, 134, 516, 824, 842
TaiI	ACGT	3 cut(s)	879, 905, 1010
TaqI	TCGA	2 cut(s)	527, 895
TasI	AATT	6 cut(s)	302, 807, 817, 866, 926, 984
TatI	WGTACW	2 cut(s)	95, 439
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	4 cut(s)	143, 197, 445, 765
Tru1I	TTAA	3 cut(s)	305, 786, 1060
Tru9I	TTAA	3 cut(s)	305, 786, 1060
TscAI	CASTG	2 cut(s)	399, 493
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	429
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	4 cut(s)	28, 929, 1037, 1049
TspRI	CASTG	2 cut(s)	399, 493
VpaK11BI	GGWCC	2 cut(s)	610, 944
XapI	RAATTY	3 cut(s)	866, 926, 984
ZraI	GACGTC	1 cut(s)	903
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.