Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000126.1

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

56344 .. 57983

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000126.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgccatatcagtcttgtatttgtaaaatagatgggttgtactggccttgccccgggcactgggtgcccggggtggcaccttatgtgaagcccgccatggtgaggtgtgaacccggcccatggcgtagtacctgggagtaccgatggggctcagggtctagtgccaaacctatcactggcaatggattcgaagctttgacaccgaattttgatttcgattcagtgaacttcgtcggtcaccatgctcttcccccaactccgacttcgactccgttgattttctcctccaatgaattgcttgattgttacaatccagccactgatcttctaagggaaaggttagttatgtctcttgaagtcaacattggaaagcaacgaaaaattctggaggttggacctggaaatgcatcgcaggtcttgctgccaacccaacattcagaggatcgcatgtgcaccatcgccggaggcgccgaacctgtgcttctctgttctccaacttccagttcgaaaacccaaagtactacttcgtggaccaccaccgtagctccgccaccggattaccaggctgctcaagaaggtgaaggctgggtcagctttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

200

Amino Acids

21.84

Weight (kDa)

5.19

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	3 cut(s)	64, 76, 467
AciI	CCGC	2 cut(s)	93, 548
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	205, 381
AcyI	GRCGYC	1 cut(s)	468
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	4 cut(s)	41, 130, 140, 520
AfiI	CCNNNNNNNGG	5 cut(s)	53, 60, 102, 120, 176
AgsI	TTSAA	2 cut(s)	356, 599
AjnI	CCWGG	3 cut(s)	131, 397, 561
AjuI	GAANNNNNNNTTGG	8 cut(s)	247, 279, 348, 380, 418, 450, 487, 519
AluBI	AGCT	3 cut(s)	194, 545, 594
AluI	AGCT	3 cut(s)	194, 545, 594
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	354
Alw44I	GTGCAC	1 cut(s)	451
AlwI	GGATC	1 cut(s)	450
AlwNI	CAGNNNCTG	1 cut(s)	320
Ama87I	CYCGRG	2 cut(s)	53, 68
AoxI	GGCC	2 cut(s)	44, 115
ApaLI	GTGCAC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	421, 566
ApoI	RAATTY	2 cut(s)	205, 381
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	3 cut(s)	116, 395, 531
AsuC2I	CCSGG	5 cut(s)	54, 55, 69, 70, 114
AsuHPI	GGTGA	3 cut(s)	112, 230, 590
AsuII	TTCGAA	2 cut(s)	189, 506
AvaI	CYCGRG	2 cut(s)	53, 68
AvaII	GGWCC	2 cut(s)	395, 531
BaeGI	GKGCMC	3 cut(s)	60, 69, 455
BanI	GGYRCC	3 cut(s)	64, 76, 467
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	408, 553
BccI	CCATC	3 cut(s)	26, 138, 464
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	3 cut(s)	133, 399, 563
BcnI	CCSGG	5 cut(s)	54, 55, 69, 70, 114
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	422, 567
BlsI	GCNGC	2 cut(s)	423, 568
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	8 cut(s)	54, 55, 69, 70, 114, 133, 399, 563
Bme18I	GGWCC	2 cut(s)	395, 531
BmeT110I	CYCGRG	2 cut(s)	53, 68
BmgT120I	GGNCC	3 cut(s)	116, 395, 531
BmiI	GGNNCC	3 cut(s)	66, 78, 469
BmrFI	CCNGG	8 cut(s)	54, 55, 69, 70, 114, 133, 399, 563
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	151
Bpu14I	TTCGAA	2 cut(s)	189, 506
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	5 cut(s)	54, 55, 69, 70, 114
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	7 cut(s)	52, 53, 68, 69, 96, 119, 132
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	4 cut(s)	253, 283, 529, 559
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 60, 102, 120, 176
Bse1I	ACTGG	4 cut(s)	47, 65, 181, 501
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	3 cut(s)	133, 399, 563
BseDI	CCNNGG	7 cut(s)	52, 53, 68, 69, 96, 119, 132
BseLI	CCNNNNNNNGG	5 cut(s)	53, 60, 102, 120, 176
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	4 cut(s)	47, 65, 181, 501
BseRI	GAGGAG	1 cut(s)	274
BseSI	GKGCMC	3 cut(s)	60, 69, 455
BseXI	GCAGC	2 cut(s)	408, 553
BseYI	CCCAGC	1 cut(s)	585
BshFI	GGCC	2 cut(s)	46, 117
BshNI	GGYRCC	3 cut(s)	64, 76, 467
BsiHKAI	GWGCWC	1 cut(s)	455
BsiHKCI	CYCGRG	2 cut(s)	53, 68
BsiSI	CCGG	5 cut(s)	54, 69, 114, 462, 554
BslI	CCNNNNNNNGG	5 cut(s)	53, 60, 102, 120, 176
BsmAI	GTCTC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	46, 117
BsoBI	CYCGRG	2 cut(s)	53, 68
Bsp119I	TTCGAA	2 cut(s)	189, 506
Bsp1286I	GDGCHC	4 cut(s)	60, 69, 152, 455
Bsp143I	GATC	2 cut(s)	322, 442
Bsp19I	CCATGG	2 cut(s)	96, 119
BspACI	CCGC	2 cut(s)	93, 548
BspANI	GGCC	2 cut(s)	46, 117
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	66, 78, 469
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	450
BspQI	GCTCTTC	1 cut(s)	252
BspT104I	TTCGAA	2 cut(s)	189, 506
BspT107I	GGYRCC	3 cut(s)	64, 76, 467
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	4 cut(s)	47, 65, 181, 501
BssECI	CCNNGG	7 cut(s)	52, 53, 68, 69, 96, 119, 132
BssMI	GATC	2 cut(s)	322, 442
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	96, 119
Bst2UI	CCWGG	3 cut(s)	133, 399, 563
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	468
BstAPI	GCANNNNNTGC	2 cut(s)	64, 418
BstBI	TTCGAA	2 cut(s)	189, 506
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	151, 329
BstDSI	CCRYGG	2 cut(s)	96, 119
BstEII	GGTNACC	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	2 cut(s)	325, 445
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	322, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 418, 467, 591
BstNI	CCWGG	3 cut(s)	133, 399, 563
BstNSI	RCATGY	1 cut(s)	451
BstPI	GGTNACC	1 cut(s)	236
BstSCI	CCNGG	8 cut(s)	52, 53, 67, 68, 112, 131, 397, 561
BstSLI	GKGCMC	3 cut(s)	60, 69, 455
BstV1I	GCAGC	2 cut(s)	408, 553
BsuRI	GGCC	2 cut(s)	46, 117
BtgI	CCRYGG	2 cut(s)	96, 119
BtgZI	GCGATG	2 cut(s)	393, 442
BtsIMutI	CAGTG	4 cut(s)	58, 174, 228, 318
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	116, 395, 531
Cfr9I	CCCGGG	2 cut(s)	53, 68
Csp6I	GTAC	4 cut(s)	40, 129, 139, 519
CviAII	CATG	4 cut(s)	97, 120, 242, 448
CviQI	GTAC	4 cut(s)	40, 129, 139, 519
DdeI	CTNAG	2 cut(s)	151, 329
DinI	GGCGCC	1 cut(s)	469
DpnI	GATC	2 cut(s)	324, 444
DpnII	GATC	2 cut(s)	322, 442
DraIII	CACNNNGTG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	96, 119
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	395, 531
Eco88I	CYCGRG	2 cut(s)	53, 68
Eco91I	GGTNACC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	131, 397, 561
EcoT14I	CCWWGG	2 cut(s)	96, 119
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
ErhI	CCWWGG	2 cut(s)	96, 119
FaeI	CATG	4 cut(s)	100, 123, 245, 451
FaiI	YATR	7 cut(s)	7, 84, 98, 121, 243, 347, 449
FalI	AAGNNNNNCTT	2 cut(s)	508, 540
FatI	CATG	4 cut(s)	96, 119, 241, 447
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	422, 567
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	422, 567
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	2 cut(s)	422, 567
GsaI	CCCAGC	1 cut(s)	589
GsuI	CTGGAG	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	46, 117
HapII	CCGG	5 cut(s)	54, 69, 114, 462, 554
HhaI	GCGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	4 cut(s)	100, 123, 245, 451
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	3 cut(s)	186, 218, 268
HpaII	CCGG	5 cut(s)	54, 69, 114, 462, 554
HphI	GGTGA	3 cut(s)	112, 230, 590
Hpy166II	GTNNAC	5 cut(s)	110, 226, 361, 453, 531
Hpy188I	TCNGA	2 cut(s)	261, 439
Hpy188III	TCNNGA	3 cut(s)	353, 386, 572
Hpy8I	GTNNAC	5 cut(s)	110, 226, 361, 453, 531
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	569, 575
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4V	TGCA	2 cut(s)	407, 453
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 418, 467, 591
HpyF3I	CTNAG	2 cut(s)	151, 329
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	4 cut(s)	100, 123, 245, 451
HspAI	GCGC	1 cut(s)	468
KasI	GGCGCC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	322, 442
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	2 cut(s)	408, 553
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	236, 305
MalI	GATC	2 cut(s)	324, 444
MboI	GATC	2 cut(s)	322, 442
MboII	GAAGA	2 cut(s)	239, 317
MhlI	GDGCHC	4 cut(s)	60, 69, 152, 455
MluCI	AATT	3 cut(s)	205, 293, 381
Mly113I	GGCGCC	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	3 cut(s)	284, 373, 518
MnlI	CCTC	5 cut(s)	96, 295, 382, 433, 458
Mph1103I	ATGCAT	1 cut(s)	409
MspI	CCGG	5 cut(s)	54, 69, 114, 462, 554
MspR9I	CCNGG	8 cut(s)	54, 55, 69, 70, 114, 133, 399, 563
MvaI	CCWGG	3 cut(s)	133, 399, 563
MwoI	GCNNNNNNNGC	4 cut(s)	64, 418, 467, 591
NarI	GGCGCC	1 cut(s)	468
NciI	CCSGG	5 cut(s)	54, 55, 69, 70, 114
NcoI	CCATGG	2 cut(s)	96, 119
NdeII	GATC	2 cut(s)	322, 442
NlaIII	CATG	4 cut(s)	100, 123, 245, 451
NlaIV	GGNNCC	3 cut(s)	66, 78, 469
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	2 cut(s)	189, 506
PciSI	GCTCTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	186, 218
PkrI	GCNGC	2 cut(s)	423, 568
PleI	GAGTC	1 cut(s)	262
PluTI	GGCGCC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	131, 397, 561
PspEI	GGTNACC	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	3 cut(s)	131, 397, 561
PspN4I	GGNNCC	3 cut(s)	66, 78, 469
PspPI	GGNCC	3 cut(s)	116, 395, 531
PstNI	CAGNNNCTG	1 cut(s)	320
RsaI	GTAC	4 cut(s)	41, 130, 140, 520
RsaNI	GTAC	4 cut(s)	40, 129, 139, 519
SapI	GCTCTTC	1 cut(s)	252
SatI	GCNGC	2 cut(s)	422, 567
Sau3AI	GATC	2 cut(s)	322, 442
Sau96I	GGNCC	3 cut(s)	116, 395, 531
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	8 cut(s)	54, 55, 69, 70, 114, 133, 399, 563
SduI	GDGCHC	4 cut(s)	60, 69, 152, 455
SfaNI	GCATC	1 cut(s)	416
SfoI	GGCGCC	1 cut(s)	469
SfuI	TTCGAA	2 cut(s)	189, 506
SinI	GGWCC	2 cut(s)	395, 531
SmaI	CCCGGG	2 cut(s)	55, 70
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	205, 293, 381
SsiI	CCGC	2 cut(s)	93, 548
SspDI	GGCGCC	1 cut(s)	467
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	8 cut(s)	52, 53, 67, 68, 112, 131, 397, 561
StyI	CCWWGG	2 cut(s)	96, 119
TaaI	ACNGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	189, 216, 266, 506
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	3 cut(s)	205, 293, 381
TatI	WGTACW	2 cut(s)	39, 518
TfiI	GAWTC	2 cut(s)	186, 218
TscAI	CASTG	4 cut(s)	65, 181, 228, 325
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	421, 566
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	261
TspMI	CCCGGG	2 cut(s)	53, 68
TspRI	CASTG	4 cut(s)	65, 181, 228, 325
VneI	GTGCAC	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	395, 531
XapI	RAATTY	2 cut(s)	205, 381
XceI	RCATGY	1 cut(s)	451
XmaI	CCCGGG	2 cut(s)	53, 68
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	520
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.