Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

8041742 .. 8042330

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCAAGCATACAACAGGTATTTGTTAAAGTTGTTAAAGAGGAAAATGTTGAGGACATTGAAAGGGAACTGTACATATGCCGAAAGTTGATCGAGAGAGCAGCAAGCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTGTCCAATCAAACAATAGTTTACAAGGGAATGCTCCGGTCAGAAGTTCTTGGTTTATTTTATTCTGACCTCCAAAGTGACCTGTATAAATCCCCTTTTGCCATCTATCATCGGAGGTATAGCACAAATACCACTCCCAGGTGGCCCCTTGCACAACCAATGAGGTTACTTGGTCACAATGGAGAGATTAATACCATACAGGGAAACTTGAACTGGATGCAATCTCGTGAAGCCTCATTGAAATCACCTGTATGGAATGGTCGTGAAAATGAAATTCGCCCATTTGGCAATCCGAAGGCATCTGACTCTGCCAATCTTGACAGTGCAGCTGAAGTATGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

163

Amino Acids

18.68

Weight (kDa)

6.15

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	1 - 160	1.1e-65	Glutamine amidotransferases class-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	417
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	62, 355, 385
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	3 cut(s)	108, 130, 473
AluI	AGCT	3 cut(s)	108, 130, 473
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	101, 470
ApoI	RAATTY	1 cut(s)	417
AseI	ATTAAT	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	381
BauI	CACGAG	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	113, 482
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	283
BglI	GCCNNNNNGGC	1 cut(s)	429
BisI	GCNGC	2 cut(s)	102, 471
BlsI	GCNGC	2 cut(s)	103, 472
Bme1390I	CCNGG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	351, 452
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	113, 482
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	72, 467
BstAUI	TGTACA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	366
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	113, 482
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	73
CviJI	RGCY	5 cut(s)	108, 130, 289, 377, 473
CviKI_1	RGCY	5 cut(s)	108, 130, 289, 377, 473
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	281
FaiI	YATR	8 cut(s)	11, 77, 79, 231, 264, 341, 397, 481
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	102, 471
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	2 cut(s)	102, 471
GluI	GCNGC	2 cut(s)	102, 471
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	181
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	6 cut(s)	112, 187, 211, 258, 438, 448
Hpy188III	TCNNGA	4 cut(s)	94, 371, 407, 461
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	72, 467
HpyCH4V	TGCA	3 cut(s)	296, 364, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	8 cut(s)	2, 194, 239, 268, 295, 329, 343, 405
Lsp1109I	GCAGC	2 cut(s)	113, 482
LweI	GCATC	2 cut(s)	351, 452
MaeIII	GTNAC	3 cut(s)	221, 309, 317
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MluCI	AATT	2 cut(s)	417, 484
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	6 cut(s)	34, 46, 224, 252, 300, 388
MseI	TTAA	3 cut(s)	27, 36, 333
MslI	CAYNNNNRTG	1 cut(s)	394
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	429
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	290
NmuCI	GTSAC	2 cut(s)	221, 317
PctI	GAATGC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	103, 472
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	27, 36, 333
SatI	GCNGC	2 cut(s)	102, 471
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	351, 452
SmiMI	CAYNNNNRTG	1 cut(s)	394
Sse9I	AATT	2 cut(s)	417, 484
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	72, 467
TaqI	TCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	417, 484
TatI	WGTACW	1 cut(s)	72
Tru1I	TTAA	3 cut(s)	27, 36, 333
Tru9I	TTAA	3 cut(s)	27, 36, 333
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	2 cut(s)	221, 317
TseI	GCWGC	2 cut(s)	101, 470
Tsp45I	GTSAC	2 cut(s)	221, 317
TspDTI	ATGAA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	472
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.