Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

29758926 .. 29760470

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTATCAAGACAATGGCTTCACAAGGGAAGGAGCCTACATTTTGCATGGGCGATGATATTCCATTGGCGATTTTATCTCAGAGACCACATATGCTATATGACTATTTCAAGCAACGGTTTGCGCAGGTTACAAATCCAGCCATTGATCCTCTAAGAGAAGGGTTAGTTATGTCTCTTGAAGTCAACATTGGAAAGCGACGAAATATTTTGGAGGTTATCTTGTCCAGTCCTGTGCTCAATGAAGGAGAACTTGAGTCATTGCTTAAGGACGCTCAGCTAAAAGCCCAATCTACTGCAGCTCAGCAAAATGAGGAGTTAGAGACAGTCAAAGCTGGTGCAGCTCAACAAAATGAAGAGTTAGAGGCAGTGAAGGTTAGAGCCGCTCAACAAAATGAAGAGTTGGAGGCACTAAAGGCAAGACAAAATCAGATTGACACACTTTTACTCAAATTGATGGCGCAGTTGTCCTTCCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

161

Amino Acids

17.91

Weight (kDa)

5.15

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_syn_central	PF04898	1 - 130	1.6e-36	Glutamate synthase central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	386
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	112, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	4 cut(s)	280, 302, 335, 344
AluI	AGCT	4 cut(s)	280, 302, 335, 344
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	3 cut(s)	79, 180, 317
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	299, 341
AspLEI	GCGC	2 cut(s)	127, 463
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	311, 353
BccI	CCATC	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	79, 180, 317
BfmI	CTRYAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	300, 342, 384
BlpI	GCTNAGC	2 cut(s)	276, 303
BlsI	GCNGC	3 cut(s)	301, 343, 385
BmiI	GGNNCC	1 cut(s)	36
Bpu1102I	GCTNAGC	2 cut(s)	276, 303
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	3 cut(s)	95, 290, 317
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	311, 353
BsgI	GTGCAG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	240
BsmAI	GTCTC	3 cut(s)	79, 180, 317
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	148
Bsp1720I	GCTNAGC	2 cut(s)	276, 303
BspACI	CCGC	1 cut(s)	384
BspCNI	CTCAG	3 cut(s)	94, 289, 316
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	120, 328
Bst6I	CTCTTC	2 cut(s)	351, 393
BstAFI	CTTAAG	1 cut(s)	266
BstDEI	CTNAG	4 cut(s)	81, 155, 276, 303
BstHHI	GCGC	2 cut(s)	127, 463
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	3 cut(s)	79, 180, 317
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 416
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	311, 353
BtgZI	GCGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	127, 463
CseI	GACGC	1 cut(s)	281
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	9 cut(s)	20, 37, 143, 280, 287, 302, 335, 344, 383
CviKI_1	RGCY	9 cut(s)	20, 37, 143, 280, 287, 302, 335, 344, 383
DdeI	CTNAG	4 cut(s)	81, 155, 276, 303
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	351, 393
EarI	CTCTTC	2 cut(s)	351, 393
Eco31I	GGTCTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	52
FaiI	YATR	6 cut(s)	50, 93, 95, 100, 102, 173
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	300, 342, 384
Fsp4HI	GCNGC	3 cut(s)	300, 342, 384
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	2 cut(s)	126, 462
GluI	GCNGC	3 cut(s)	300, 342, 384
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	127, 463
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	2 cut(s)	125, 461
HinP1I	GCGC	2 cut(s)	125, 461
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	84, 432
Hpy188III	TCNNGA	2 cut(s)	10, 179
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	5 cut(s)	25, 155, 239, 367, 481
HpyCH4III	ACNGT	2 cut(s)	120, 328
HpyCH4V	TGCA	3 cut(s)	48, 299, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 416
HpyF3I	CTNAG	4 cut(s)	81, 155, 276, 303
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	2 cut(s)	125, 461
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	5 cut(s)	113, 153, 241, 246, 321
Lsp1109I	GCAGC	2 cut(s)	311, 353
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	150
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	368, 410
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	5 cut(s)	162, 208, 307, 358, 400
MseI	TTAA	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	341, 416
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	36
NsbI	TGCGCA	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	301, 343, 385
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	3 cut(s)	300, 342, 384
Sau3AI	GATC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	7 cut(s)	132, 219, 282, 304, 337, 346, 378
SfcI	CTRYAG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	254, 266
SmoI	CTYRAG	2 cut(s)	254, 266
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	1 cut(s)	384
SspI	AATATT	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	120, 328
TasI	AATT	1 cut(s)	452
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	2 cut(s)	299, 341
TspDTI	ATGAA	3 cut(s)	258, 369, 411
TspRI	CASTG	1 cut(s)	375
Vha464I	CTTAAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.