Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

53530795 .. 53532390

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTTATTGAGACAATGGCTTCACAAGGGAAGGAGCCTACATTTTGCATGGGCGATGATATTCCATTGGCGATTTTATCTCAGAGACCACATATGGTATATGACTGTTTCAAGCAACGGTTTGCGCAGGTTACAAATCCAGCCATTGATCCTCTAAGAGAAGGGTTAGTTATGTCTCTTGAAGTCAACATTGGAAAGCGACGAAATATTTTGGAGGTTGGACCTGAAAATGCATCGCAGGGGTCGATGGTTCCTTGGAAAAAAAGCTGTATAAGCTTTGTGAAGCTGCTGATGAAGTCTACTGCAGCTAAGCAAAATGAGGAGTTAGAGACGGTCAAAGCTGGTGCAGCTCAACAAAATGAAGAGTTAGAGGCAGTGAAGGTTAGAGCCGCTCAACAAAATGAAGAGTTGGAGGCACTAAAGGCAAGACAAAATCAGACTGACACACTCTACTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

154

Amino Acids

17.05

Weight (kDa)

5.54

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_syn_central	PF04898	1 - 96	2.9e-32	Glutamate synthase central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	112, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	6 cut(s)	267, 276, 286, 308, 341, 350
AluI	AGCT	6 cut(s)	267, 276, 286, 308, 341, 350
Alw26I	GTCTC	4 cut(s)	5, 79, 180, 323
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	286, 305, 347
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	273, 317, 359
BccI	CCATC	1 cut(s)	241
BcoDI	GTCTC	4 cut(s)	5, 79, 180, 323
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	4 cut(s)	287, 306, 348, 390
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	4 cut(s)	288, 307, 349, 391
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	36, 252
BmsI	GCATC	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	273, 317, 359
BsgI	GTGCAG	1 cut(s)	366
BsmAI	GTCTC	4 cut(s)	5, 79, 180, 323
BsmBI	CGTCTC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	148
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	36, 252
BspMAI	CTGCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	107, 120, 334
Bst6I	CTCTTC	2 cut(s)	357, 399
BstDEI	CTNAG	3 cut(s)	81, 155, 309
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	4 cut(s)	5, 79, 180, 323
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 347, 422
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	273, 317, 359
BtgZI	GCGATG	2 cut(s)	69, 219
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	81, 155, 309
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	357, 399
EarI	CTCTTC	2 cut(s)	357, 399
Eco130I	CCWWGG	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	254
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	1 cut(s)	52
FaiI	YATR	7 cut(s)	50, 93, 95, 100, 102, 173, 272
FatI	CATG	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	4 cut(s)	287, 306, 348, 390
Fsp4HI	GCNGC	4 cut(s)	287, 306, 348, 390
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	4 cut(s)	287, 306, 348, 390
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	187, 300
Hpy188I	TCNGA	2 cut(s)	84, 438
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	187, 300
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	3 cut(s)	25, 155, 373
HpyCH4III	ACNGT	3 cut(s)	107, 120, 334
HpyCH4V	TGCA	4 cut(s)	48, 233, 305, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 347, 422
HpyF3I	CTNAG	3 cut(s)	81, 155, 309
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	5 cut(s)	113, 153, 224, 237, 327
Lsp1109I	GCAGC	3 cut(s)	273, 317, 359
LweI	GCATC	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	150
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	374, 416
MluCI	AATT	1 cut(s)	457
MmeI	TCCRAC	2 cut(s)	199, 390
MnlI	CCTC	5 cut(s)	162, 208, 313, 364, 406
Mph1103I	ATGCAT	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	273, 347, 422
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	36, 252
NsbI	TGCGCA	1 cut(s)	126
NsiI	ATGCAT	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	288, 307, 349, 391
PspN4I	GGNNCC	2 cut(s)	36, 252
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	307
SatI	GCNGC	4 cut(s)	287, 306, 348, 390
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	457
SsiI	CCGC	1 cut(s)	390
SspI	AATATT	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	3 cut(s)	107, 120, 334
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	457
TauI	GCSGC	1 cut(s)	392
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	3 cut(s)	286, 305, 347
TspDTI	ATGAA	3 cut(s)	308, 375, 417
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.