Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005346

Physical Location & Seq

Genomic Coordinates Reverse (-)

36484571 .. 36510379

Gene Structure 25809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4182 bp

ATGCCCAGCATACAACAGGTATTCGTCAAAGTTGTTAAAGAGGAAAAAGTTGAGGACATTGAGCGAGAACTGTACATATGCCGGAAGTTAATCGAAAGAGCAGCAAGCTCAGAAAGTTGGGGCAGTGATCTTTATTTCTGTTCTTTGTCCAATCAAACAATAGTTTACAAAGGAATGCTACGCTCAGAAGTTCTTGGTTTATTTTATTCTGACCTCCAAAGTGACCTTTATAAATCCGCTTTTGCCATCTATCATCGAAGGTATAGCACAAATACCACTCCTAGATGGCCCCTTGCACAACCAATGAGGTTACTTGGTCACAATGGAGAGATCAACACCATACAGGGGAACTTGAACTGGATGCAATCACGTGAAGCCTCACTGAAGTCACCTGTATGGCATGATCGTGAAAATGAACTTCGTCCATATGGCAATCCAAAGGGTTCAGACTCTGCGAATCTTGACAGTGCGGCTGAATTCTTACTAAGAAGTGGCCGGACTGCTGAGGAGGCTCTGATGATTCTTGTCCCTGAGGGATACAAAAATCATCCAACTCTGATGATTAACTATCCAGAGGTGGTTGATTTTTATGACTATTACAAGGGTCAGATGGAGGCTTGGGATGGACCTGCTTTATTGTTATTCAGTGATGGAAAAACAGTTGGGGCATGTCTTGATCGTAATGGACTTCGGCCTGCTAGATATTGGCGGACATCTGATAATGTTGTTTATGTCGCATCTGAGGTTGGGGTTCTTCCAGTGGATGATTCAAAAGTTACAATGAAAGGTCGTCTAGGTCCTGGAATGATGATATCTGTTGACTTACTAAGTGGTCAGGTTTATGAGAACACAGAAGTTAAGAAGCGAGTGGCTTTGTCAAATCCATATGGAAAGTGGGTGCAGGAAAACATGCGGACCTTAAAGACTGTGAACTTCCTTTCATCCACAATCGCGGACAATGATGCAATACTGAGACGACAACAGGCATTTGGTTACTCGAGTGAGGATGTCCAAATGGTTATCGAGACAATGGCTTCACAAGGGAAGGAGCCTACATTTTGCATGGGCGATGATATTCCATTGGCGATTTTATCTCAGAGACCACATATGCTATATGACTATTTCAAGCAACGGTTTGCGCAGGTTACAAATCCAGCCATTGATCCTCTAAGAGAAGGGTTAGTTATGTCTCTTGAAGTCAACATTGGAAAGCGACAAAATATTTTGGAGGTTGGACCTGAAAATGCATCGCAGGTTATCTTGTCCAGTCCTGTGCTCAATGAAGGAGAACTTGAGTCATTGCTTAAGGATGCTCAGCTAAAACCCCAAGTTTTACCTACATTTTTTGATATTCATAAAGGGGTCGATGGTTCCTTGGAAAAAACGCTGTATAAGCTTTGTGAAGCTGCTGATGATGCTGTTCAAAATGGTTGCCAATTGCTTGTTCTGTCTGACCGGTCTGATGAATTGGAAGCAACTCGTCCTGCCATTCCAATCCTTCTTGCTGTTGGTGCTGTTCATCAGCATCTTATTCAAAATGGGTTGAGAATGTCAGCTTCTATAATAGTGGATACTGCTCAGTGCTTTAGCACTCATCAATTTGCCTGTTTGATTGGATATGGTGCAAGTGCTGTGTGTCCATACTTGGCATTGGAGACATGTCGGCAGTGGCGTCTGAGTAATAAAACAGTAAATCTAATGCGGAACGGGAAGATGCCTACTGTAACGATTGAACAGGCTCAAAAGAACTTCTGCAAGGCTGTTACGGCTGGTCTTCTTAAAATTCTTTCCAAAATGGGGATCTCGTTGCTTTCAAGTTATTGCGGTGCACAGATTTTTGAGATTTATGGATTGGGGAAGGAGGTTGTTGATCTTGCATTTTGTGGGAGTATATCAAGTATTGGTGGATTAACTTTTGATGAGCTGGCGAGGGAGACTTTGTCCTTCTGGGTGAAGGCTTTCTCTGAGGATACAGCTAAACGACTGGAAAATTTTGGATTTATACAATTCAGACCAGGAGGGGAGTATCATGGAAACAACCCAGAGATGTCGAAATTGCTACACAAAGCTGTTCGACAGAAGAATGAAAGTGCCTTTTCTGTTTATCAGCAGCATTTAGCTAACCGGCCCGTTAATGTTCTTCGCGATCTCATTGAGTTCAAAAGCGATCGTTCTCCAATCCCTGTGGGAAAGGTTGAACCTGCTGTATCCATTGTTCAACGATTCTGCACTGGTGGGATGTCACTTGGAGCTATTTCCAGAGAAACTCATGAGGCTATAGCCATTGCAATGAATAGAATAGGTGGAAAGTCCAATTCTGGAGAAGGTGGTGAGGATCCTATTCGCTGGAAACCACTTGCAGATGTTGTTGATGGGTATTCACCGACCCTTCCACATCTAAAAGGTCTTCAAAATGGAGATACTGCTACAAGTGCTATCAAGCAGGTTGCTTCAGGACGTTTTGGAGTCACTCCCACCTTCTTGGTCAATGCCGATCAGCTGGAAATCAAAATTGCACAAGGGGCGAAGCCTGGTGAAGGTGGCCAACTGCCTGGTAAAAAAGTTAGTGCATACATTGCGAGGTTGAGAAACTCGAAACCTGGGGTTCCACTTATATCTCCACCTCCACACCATGACATTTATTCTATAGAGGATCTTGCCCAATTGATCTATGACCTTCATCAGGTGAACCCTAAAGCTAAGGTGTCAGTGAAACTTGTGGCTGAAGCTGGAATTGGCACTGTTGCTTCTGGGGTTGCAAAGGGTAATGCTGATATCATACAGATATCAGGGCATGATGGTGGAACTGGGGCCAGTCCTATAAGTTCCATTAAGCATGCTGGTGGGCCCTGGGAACTAGGACTCACAGAAACACACCAGACACTCATAGAAAATGGACTTAGAGAACGAGTCATTCTGAGAGTTGATGGTGGCTTTAAAAGCGGAGTTGATGTCCTAATGGCTGCAACTATGGGTGCTGATGAGTACGGGTTTGGGTCTGTGGCAATGATTGCTACAGGTTGTGTTATGGCCCGCATTTGCCATACGAATAATTGTCCTGTTGGTGTAGCCAGCCAGAGAGAGGAACTGCGTGCTCGATTTCCTGGCGTGCCTGGTGATCTAGTCAACTTTTTTTTGTATGTTGCCGAGGAGGTAAGAGGCATGTTGGCACAGTTGGGATATGAGAAGTTAGACGATATAATTGGACGGACAGATTTGTTTAGACCACGAGATATATCTCTAATGAAAACACAGCATCTTGATCTCGGTTATATTCTATCAAATGTCGGGTTACCAAAATGGAGCAGTACCATGATCAGGAATCAGGATGTTCATACTAACGGTCCTGTTCTGGATGATATTTTACTAGGAGATCCAGAGATATCAGATGCAATTGAGAATGAAAAAGTGGTTCAGAAGACCGTAAAGATATACAATGTGGATCGTGCTGTTTGTGGGCGTATAGCAGGGGTGGTTGCCAAAAAGTACGGTGACACTGGTTTTGCTGGGCAGCTGAACATAACCTTTACAGGGAGCGCTGGGCAATCATTTGGTTGCTTCTTGACTCCTGGGATGAATATTCGACTTGTTGGAGAGGCAAATGATTATGTGGGAAAGAGTATTTCGGGGGGAGAATTGGTTGTCACTCCGGCAGAGAATACGGGATTTTGCCCTGAGGATGCAACTATTGTAGGGAATACCTGCTTGTATGGTGCAACTGGGGGTCAAATCTTTGTTAGAGGGAAAGCCGGAGAGCGATTTGCTGTAAGAAACTCTCTTGCACAAGCAGTGGTTGAAGGCACTGGAGACCACTGTTGTGAATACATGACTGGTGGCTGTGTAGTTGTACTTGGAAAAGTGGGTAGAAATGTTGCTGCTGGAATGACCGGAGGTCTGGCATACTTTCTTGATGAGGACGATTCTTTCATCCCCAAGGTAAATAGGGAGATTGTGAAGATCCAGAGAGTCAATGCTCCTGTGGGGCAGATGCAGCTAAAGACCCTTATTGAAGCCCATGTTGAAAAAACTGGAAGTGGCAAGGGCTCTGTTATTCTGAAAGAGTGGGACAAGTACTTGCCACTCTTCTGGCAGCTGGTTCCCCCTAGTGAAGAAGACACTCCAGAGGCGTGTGCAGACTATGTGAGAACAGCTGCTGGTGAAGTGACTTTGCAGTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

1393

Amino Acids

152.04

Weight (kDa)

5.92

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	1 - 299	4.8e-128	Glutamine amidotransferases class-II
Glu_syn_central	PF04898	325 - 618	1.4e-107	Glutamate synthase central domain
Glu_synthase	PF01645	678 - 1061	1.9e-155	Conserved region in glutamate synthase
GXGXG	PF01493	1143 - 1326	1.4e-78	GXGXG motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41220 AT5G04140 AT5G04140
fragaria_vesca	FvH4_6g25460 FvH4_6g25460 FvH4_6g25460 FvH4_6g25460
malus_domestica	MD14G1087500.v1.1
prunus_persica	Prupe.7G039100_v2.0.a1
pyrus_communis	pycom14g07760 pycom14g07770
rosa_chinensis	RchiOBHm_Chr2g0125471
rosa_laevigata	RLG00000018438 RLG00000018867 RLG00000030615 RLG00000034746
rosa_multiflora	Rmu_sc0005339.1_g000009 Rmu_sc0005339.1_g000011 Rmu_ssc0000126.1_g000014
rosa_roxburghii	Rroxscaffold_1G00035740 Rroxscaffold_2G00117960
rosa_rugosa	Rorug02G0257500 Rorug02G0257600
rosa_samantha	Rh2AG316500 Rh2BG324000 Rh2BG355400 Rh2CG306200 Rh2DG342600
rosa_wichuraiana	Rw2G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AasI	GACNNNNNNGTC	1 cut(s)	4171
Acc16I	TGCGCA	1 cut(s)	1140
Acc36I	ACCTGC	6 cut(s)	637, 1132, 1243, 2209, 2434, 3710
AccII	CGCG	2 cut(s)	953, 2145
AciI	CCGC	9 cut(s)	237, 470, 709, 913, 953, 1702, 1824, 2943, 3034
AclWI	GGATC	8 cut(s)	1157, 1808, 2330, 2343, 2661, 3368, 3450, 3952
AcoI	YGGCCR	2 cut(s)	493, 2542
AcsI	RAATTY	3 cut(s)	476, 1782, 1990
AcuI	CTGAAG	3 cut(s)	404, 2436, 2745
AcvI	CACGTG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	1672
AfaI	GTAC	6 cut(s)	74, 2987, 3310, 3488, 3849, 4073
AfeI	AGCGCT	1 cut(s)	3538
AfiI	CCNNNNNNNGG	7 cut(s)	345, 1797, 2537, 2683, 3082, 3318, 3531
AflII	CTTAAG	1 cut(s)	1304
AflIII	ACRYGT	1 cut(s)	1658
AgeI	ACCGGT	1 cut(s)	1455
AhdI	GACNNNNNGTC	1 cut(s)	3891
AjnI	CCWGG	9 cut(s)	799, 2014, 2530, 2551, 2599, 2849, 3103, 3112, 3568
AjuI	GAANNNNNNNTTGG	6 cut(s)	1188, 1220, 1428, 1460, 2718, 2750
AleI	CACNNNNGTG	1 cut(s)	3816
Alw21I	GWGCWC	3 cut(s)	1278, 1831, 3097
Alw26I	GTCTC	7 cut(s)	967, 1019, 1093, 1194, 1649, 1928, 3801
Alw44I	GTGCAC	1 cut(s)	1827
AlwI	GGATC	8 cut(s)	1157, 1808, 2330, 2343, 2661, 3368, 3450, 3952
AlwNI	CAGNNNCTG	2 cut(s)	452, 4154
Ama87I	CYCGRG	1 cut(s)	997
Aor51HI	AGCGCT	1 cut(s)	3538
AoxI	GGCC	8 cut(s)	287, 493, 692, 2126, 2542, 2811, 2846, 3030
ApaI	GGGCCC	1 cut(s)	2850
ApaLI	GTGCAC	1 cut(s)	1827
ApeKI	GCWGC	9 cut(s)	101, 1406, 2110, 2963, 3511, 3875, 3991, 4090, 4151
ApoI	RAATTY	3 cut(s)	476, 1782, 1990
ArsI	GACNNNNNNTTYG	2 cut(s)	3485, 3517
AsiGI	ACCGGT	1 cut(s)	1455
Asp700I	GAANNNNTTC	1 cut(s)	1958
AspLEI	GCGC	2 cut(s)	1141, 3539
AsuHPI	GGTGA	9 cut(s)	381, 1963, 2342, 2373, 2546, 2698, 3128, 3503, 4169
AvaI	CYCGRG	1 cut(s)	997
AvaII	GGWCC	5 cut(s)	626, 797, 915, 1235, 3344
AxyI	CCTNAGG	2 cut(s)	531, 3675
BaeGI	GKGCMC	2 cut(s)	1831, 2850
BalI	TGGCCA	1 cut(s)	2544
BamHI	GGATCC	1 cut(s)	2335
BanII	GRGCYC	2 cut(s)	2850, 4046
BauI	CACGAG	1 cut(s)	3228
BbrPI	CACGTG	1 cut(s)	371
BbsI	GAAGAC	4 cut(s)	1766, 2399, 3425, 4119
Bbv12I	GWGCWC	3 cut(s)	1278, 1831, 3097
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	9 cut(s)	113, 1393, 2122, 2950, 3523, 3862, 4003, 4102, 4138
BccI	CCATC	9 cut(s)	254, 279, 604, 617, 644, 1361, 2366, 2792, 2921
BceAI	ACGGC	1 cut(s)	1782
BciT130I	CCWGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
BciVI	GTATCC	4 cut(s)	530, 1564, 1963, 2218
BclI	TGATCA	1 cut(s)	3315
BcoDI	GTCTC	7 cut(s)	967, 1019, 1093, 1194, 1649, 1928, 3801
BfaI	CTAG	7 cut(s)	282, 699, 794, 2858, 3122, 3368, 4104
BfmI	CTRYAG	3 cut(s)	2277, 2646, 3015
BfoI	RGCGCY	1 cut(s)	3540
BfrI	CTTAAG	1 cut(s)	1304
BfuAI	ACCTGC	6 cut(s)	637, 1132, 1243, 2209, 2434, 3710
BfuI	GTATCC	4 cut(s)	530, 1564, 1963, 2218
BlpI	GCTNAGC	1 cut(s)	1314
BmcAI	AGTACT	1 cut(s)	4073
Bme1390I	CCNGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
Bme18I	GGWCC	5 cut(s)	626, 797, 915, 1235, 3344
BmeRI	GACNNNNNGTC	1 cut(s)	3891
BmeT110I	CYCGRG	1 cut(s)	997
BmiI	GGNNCC	8 cut(s)	290, 1050, 1372, 2337, 2607, 2812, 2848, 4098
BmrFI	CCNGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
BmrI	ACTGGG	2 cut(s)	2817, 3729
BmuI	ACTGGG	2 cut(s)	2817, 3729
BpiI	GAAGAC	4 cut(s)	1766, 2399, 3425, 4119
BpmI	CTGGAG	3 cut(s)	2340, 3825, 4104
Bpu10I	CCTNAGC	2 cut(s)	504, 2700
Bpu1102I	GCTNAGC	1 cut(s)	1314
BpuEI	CTTGAG	1 cut(s)	1313
BsaAI	YACGTR	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	1672
BsaI	GGTCTC	2 cut(s)	1093, 3801
BsaJI	CCNNGG	7 cut(s)	1374, 2600, 2849, 2850, 3147, 3569, 3933
BsaWI	WCCGGW	2 cut(s)	1455, 3887
BsaXI	ACNNNNNCTCC	6 cut(s)	1925, 1955, 2937, 2967, 3624, 3654
Bsc4I	CCNNNNNNNGG	7 cut(s)	345, 1797, 2537, 2683, 3082, 3318, 3531
Bse118I	RCCGGY	2 cut(s)	1455, 2124
Bse21I	CCTNAGG	2 cut(s)	531, 3675
Bse3DI	GCAATG	5 cut(s)	1298, 2283, 2295, 2574, 3012
BseBI	CCWGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
BseDI	CCNNGG	7 cut(s)	1374, 2600, 2849, 2850, 3147, 3569, 3933
BseLI	CCNNNNNNNGG	7 cut(s)	345, 1797, 2537, 2683, 3082, 3318, 3531
BseMI	GCAATG	5 cut(s)	1298, 2283, 2295, 2574, 3012
BseRI	GAGGAG	2 cut(s)	521, 3164
BseSI	GKGCMC	2 cut(s)	1831, 2850
BseXI	GCAGC	9 cut(s)	113, 1393, 2122, 2950, 3523, 3862, 4003, 4102, 4138
BseYI	CCCAGC	3 cut(s)	5, 3506, 3539
BsgI	GTGCAG	3 cut(s)	920, 2212, 4152
Bsh1236I	CGCG	2 cut(s)	953, 2145
Bsh1285I	CGRYCG	1 cut(s)	2170
BshFI	GGCC	8 cut(s)	289, 495, 694, 2128, 2544, 2813, 2848, 3032
BshTI	ACCGGT	1 cut(s)	1455
BsiEI	CGRYCG	1 cut(s)	2170
BsiHKAI	GWGCWC	3 cut(s)	1278, 1831, 3097
BsiHKCI	CYCGRG	1 cut(s)	997
BsiSI	CCGG	7 cut(s)	82, 496, 1456, 2125, 3650, 3750, 3888
BslFI	GGGAC	2 cut(s)	512, 4079
BslI	CCNNNNNNNGG	7 cut(s)	345, 1797, 2537, 2683, 3082, 3318, 3531
BsmAI	GTCTC	7 cut(s)	967, 1019, 1093, 1194, 1649, 1928, 3801
BsmBI	CGTCTC	1 cut(s)	967
BsmFI	GGGAC	2 cut(s)	512, 4079
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	8 cut(s)	289, 495, 694, 2128, 2544, 2813, 2848, 3032
Bso31I	GGTCTC	2 cut(s)	1093, 3801
BsoBI	CYCGRG	1 cut(s)	997
Bsp120I	GGGCCC	1 cut(s)	2846
Bsp1286I	GDGCHC	5 cut(s)	1278, 1831, 2850, 3097, 4046
Bsp1407I	TGTACA	1 cut(s)	72
Bsp1720I	GCTNAGC	1 cut(s)	1314
Bsp68I	TCGCGA	1 cut(s)	2145
BspACI	CCGC	9 cut(s)	237, 470, 709, 913, 953, 1702, 1824, 2943, 3034
BspANI	GGCC	8 cut(s)	289, 495, 694, 2128, 2544, 2813, 2848, 3032
BspFNI	CGCG	2 cut(s)	953, 2145
BspHI	TCATGA	1 cut(s)	2269
BspLI	GGNNCC	8 cut(s)	290, 1050, 1372, 2337, 2607, 2812, 2848, 4098
BspMI	ACCTGC	6 cut(s)	637, 1132, 1243, 2209, 2434, 3710
BspPI	GGATC	8 cut(s)	1157, 1808, 2330, 2343, 2661, 3368, 3450, 3952
BspTI	CTTAAG	1 cut(s)	1304
BspTNI	GGTCTC	2 cut(s)	1093, 3801
BsrDI	GCAATG	5 cut(s)	1298, 2283, 2295, 2574, 3012
BsrFI	RCCGGY	2 cut(s)	1455, 2124
BsrGI	TGTACA	1 cut(s)	72
BssAI	RCCGGY	2 cut(s)	1455, 2124
BssECI	CCNNGG	7 cut(s)	1374, 2600, 2849, 2850, 3147, 3569, 3933
BssNI	GRCGYC	1 cut(s)	1672
BssSI	CACGAG	1 cut(s)	3228
BssT1I	CCWWGG	2 cut(s)	1374, 3933
Bst2BI	CACGAG	1 cut(s)	3228
Bst2UI	CCWGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
Bst6I	CTCTTC	1 cut(s)	4088
BstACI	GRCGYC	1 cut(s)	1672
BstAFI	CTTAAG	1 cut(s)	1304
BstAPI	GCANNNNNTGC	2 cut(s)	2576, 3011
BstAUI	TGTACA	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	8 cut(s)	106, 696, 1926, 2838, 3034, 3073, 3093, 3110
BstEII	GGTNACC	1 cut(s)	3291
BstENI	CCTNNNNNAGG	2 cut(s)	2535, 2681
BstFNI	CGCG	2 cut(s)	953, 2145
BstH2I	RGCGCY	1 cut(s)	3540
BstHHI	GCGC	2 cut(s)	1141, 3539
BstMAI	GTCTC	7 cut(s)	967, 1019, 1093, 1194, 1649, 1928, 3801
BstMCI	CGRYCG	1 cut(s)	2170
BstNI	CCWGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
BstNSI	RCATGY	5 cut(s)	672, 913, 1662, 2840, 3166
BstPI	GGTNACC	1 cut(s)	3291
BstSCI	CCNGG	9 cut(s)	799, 2014, 2530, 2551, 2599, 2849, 3103, 3112, 3568
BstSFI	CTRYAG	3 cut(s)	2277, 2646, 3015
BstSLI	GKGCMC	2 cut(s)	1831, 2850
BstUI	CGCG	2 cut(s)	953, 2145
BstV1I	GCAGC	9 cut(s)	113, 1393, 2122, 2950, 3523, 3862, 4003, 4102, 4138
BstV2I	GAAGAC	4 cut(s)	1766, 2399, 3425, 4119
BstX2I	RGATCY	5 cut(s)	1800, 2335, 2653, 3373, 3957
BstXI	CCANNNNNNTGG	3 cut(s)	2482, 2552, 4086
BstYI	RGATCY	5 cut(s)	1800, 2335, 2653, 3373, 3957
Bsu36I	CCTNAGG	2 cut(s)	531, 3675
BsuI	GTATCC	4 cut(s)	530, 1564, 1963, 2218
BsuRI	GGCC	8 cut(s)	289, 495, 694, 2128, 2544, 2813, 2848, 3032
BtgZI	GCGATG	2 cut(s)	1083, 1233
BtsI	GCAGTG	3 cut(s)	130, 1673, 3795
BtuMI	TCGCGA	1 cut(s)	2145
BveI	ACCTGC	6 cut(s)	637, 1132, 1243, 2209, 2434, 3710
Cac8I	GCNNGC	8 cut(s)	106, 696, 1926, 2838, 3034, 3073, 3093, 3110
CaiI	CAGNNNCTG	2 cut(s)	452, 4154
CciI	TCATGA	1 cut(s)	2269
CfoI	GCGC	2 cut(s)	1141, 3539
Cfr10I	RCCGGY	2 cut(s)	1455, 2124
CseI	GACGC	1 cut(s)	1661
Csp6I	GTAC	6 cut(s)	73, 2986, 3309, 3487, 3848, 4072
CspAI	ACCGGT	1 cut(s)	1455
CspCI	CAANNNNNGTGG	2 cut(s)	2166, 2201
CviQI	GTAC	6 cut(s)	73, 2986, 3309, 3487, 3848, 4072
DraI	TTTAAA	1 cut(s)	2938
DrdI	GACNNNNNNGTC	1 cut(s)	4171
DriI	GACNNNNNGTC	1 cut(s)	3891
DseDI	GACNNNNNNGTC	1 cut(s)	4171
EaeI	YGGCCR	2 cut(s)	493, 2542
Eam1104I	CTCTTC	1 cut(s)	4088
Eam1105I	GACNNNNNGTC	1 cut(s)	3891
EarI	CTCTTC	1 cut(s)	4088
EciI	GGCGGA	1 cut(s)	724
Eco130I	CCWWGG	2 cut(s)	1374, 3933
Eco24I	GRGCYC	2 cut(s)	2850, 4046
Eco31I	GGTCTC	2 cut(s)	1093, 3801
Eco32I	GATATC	4 cut(s)	813, 2776, 2787, 3384
Eco47I	GGWCC	5 cut(s)	626, 797, 915, 1235, 3344
Eco47III	AGCGCT	1 cut(s)	3538
Eco57I	CTGAAG	3 cut(s)	404, 2436, 2745
Eco72I	CACGTG	1 cut(s)	371
Eco81I	CCTNAGG	2 cut(s)	531, 3675
Eco88I	CYCGRG	1 cut(s)	997
Eco91I	GGTNACC	1 cut(s)	3291
EcoNI	CCTNNNNNAGG	2 cut(s)	2535, 2681
EcoO109I	RGGNCCY	2 cut(s)	797, 2847
EcoO65I	GGTNACC	1 cut(s)	3291
EcoRI	GAATTC	1 cut(s)	476
EcoRII	CCWGG	9 cut(s)	799, 2014, 2530, 2551, 2599, 2849, 3103, 3112, 3568
EcoRV	GATATC	4 cut(s)	813, 2776, 2787, 3384
EcoT14I	CCWWGG	2 cut(s)	1374, 3933
EcoT22I	ATGCAT	1 cut(s)	1249
EcoT38I	GRGCYC	2 cut(s)	2850, 4046
ErhI	CCWWGG	2 cut(s)	1374, 3933
Esp3I	CGTCTC	1 cut(s)	967
FalI	AAGNNNNNCTT	2 cut(s)	1275, 1307
FaqI	GGGAC	2 cut(s)	512, 4079
FauI	CCCGC	1 cut(s)	3041
FauNDI	CATATG	4 cut(s)	77, 427, 886, 1107
FbaI	TGATCA	1 cut(s)	3315
FriOI	GRGCYC	2 cut(s)	2850, 4046
FspBI	CTAG	7 cut(s)	282, 699, 794, 2858, 3122, 3368, 4104
FspI	TGCGCA	1 cut(s)	1140
GlaI	GCGC	2 cut(s)	1140, 3538
GsaI	CCCAGC	3 cut(s)	9, 3510, 3543
GsuI	CTGGAG	3 cut(s)	2340, 3825, 4104
HaeII	RGCGCY	1 cut(s)	3540
HaeIII	GGCC	8 cut(s)	289, 495, 694, 2128, 2544, 2813, 2848, 3032
HapII	CCGG	7 cut(s)	82, 496, 1456, 2125, 3650, 3750, 3888
HgaI	GACGC	1 cut(s)	1661
HhaI	GCGC	2 cut(s)	1141, 3539
Hin1I	GRCGYC	1 cut(s)	1672
Hin6I	GCGC	2 cut(s)	1139, 3537
HinP1I	GCGC	2 cut(s)	1139, 3537
HincII	GTYRAC	3 cut(s)	820, 1201, 3127
HindII	GTYRAC	3 cut(s)	820, 1201, 3127
HindIII	AAGCTT	1 cut(s)	1394
HpaII	CCGG	7 cut(s)	82, 496, 1456, 2125, 3650, 3750, 3888
HphI	GGTGA	9 cut(s)	381, 1963, 2342, 2373, 2546, 2698, 3128, 3503, 4169
Hpy166II	GTNNAC	7 cut(s)	166, 820, 931, 1201, 1829, 2689, 3127
Hpy8I	GTNNAC	7 cut(s)	166, 820, 931, 1201, 1829, 2689, 3127
HpyCH4IV	ACGT	2 cut(s)	370, 2458
HpySE526I	ACGT	2 cut(s)	370, 2458
Hsp92I	GRCGYC	1 cut(s)	1672
HspAI	GCGC	2 cut(s)	1139, 3537
Ksp22I	TGATCA	1 cut(s)	3315
LmnI	GCTCC	5 cut(s)	1048, 2249, 3303, 3534, 3979
Lsp1109I	GCAGC	9 cut(s)	113, 1393, 2122, 2950, 3523, 3862, 4003, 4102, 4138
MaeI	CTAG	7 cut(s)	282, 699, 794, 2858, 3122, 3368, 4104
MaeII	ACGT	2 cut(s)	370, 2458
MfeI	CAATTG	3 cut(s)	1436, 2663, 3393
MflI	RGATCY	5 cut(s)	1800, 2335, 2653, 3373, 3957
MhlI	GDGCHC	5 cut(s)	1278, 1831, 2850, 3097, 4046
MlsI	TGGCCA	1 cut(s)	2544
MluNI	TGGCCA	1 cut(s)	2544
MlyI	GAGTC	7 cut(s)	443, 1304, 2475, 2856, 2919, 3559, 3975
MmeI	TCCRAC	3 cut(s)	575, 1213, 3571
Mox20I	TGGCCA	1 cut(s)	2544
Mph1103I	ATGCAT	1 cut(s)	1249
MroXI	GAANNNNTTC	1 cut(s)	1958
MscI	TGGCCA	1 cut(s)	2544
MslI	CAYNNNNRTG	6 cut(s)	394, 405, 2288, 2799, 2841, 3816
Msp20I	TGGCCA	1 cut(s)	2544
MspA1I	CMGCKG	4 cut(s)	2500, 3514, 4093, 4151
MspCI	CTTAAG	1 cut(s)	1304
MspI	CCGG	7 cut(s)	82, 496, 1456, 2125, 3650, 3750, 3888
MspR9I	CCNGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
MunI	CAATTG	3 cut(s)	1436, 2663, 3393
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
MvnI	CGCG	2 cut(s)	953, 2145
NdeI	CATATG	4 cut(s)	77, 427, 886, 1107
NlaIV	GGNNCC	8 cut(s)	290, 1050, 1372, 2337, 2607, 2812, 2848, 4098
NmeAIII	GCCGAG	1 cut(s)	3172
NmuCI	GTSAC	8 cut(s)	221, 317, 387, 2241, 2467, 3491, 3643, 4162
NruI	TCGCGA	1 cut(s)	2145
NsbI	TGCGCA	1 cut(s)	1140
NsiI	ATGCAT	1 cut(s)	1249
NspI	RCATGY	5 cut(s)	672, 913, 1662, 2840, 3166
OliI	CACNNNNGTG	1 cut(s)	3816
PaeI	GCATGC	1 cut(s)	2840
PaeR7I	CTCGAG	1 cut(s)	997
PagI	TCATGA	1 cut(s)	2269
PasI	CCCWGGG	1 cut(s)	2850
PciI	ACATGT	1 cut(s)	1658
PcsI	WCGNNNNNNNCGW	1 cut(s)	1669
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	1958
PfeI	GAWTC	6 cut(s)	457, 520, 767, 2223, 3322, 3920
PflFI	GACNNNGTC	1 cut(s)	1939
PfoI	TCCNGGA	1 cut(s)	799
PinAI	ACCGGT	1 cut(s)	1455
Ple19I	CGATCG	1 cut(s)	2170
PleI	GAGTC	7 cut(s)	443, 1303, 2474, 2856, 2918, 3559, 3974
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	7 cut(s)	443, 1303, 2474, 2856, 2918, 3559, 3974
Ppu21I	YACGTR	1 cut(s)	371
PpuMI	RGGWCCY	1 cut(s)	797
PscI	ACATGT	1 cut(s)	1658
PsiI	TTATAA	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	9 cut(s)	799, 2014, 2530, 2551, 2599, 2849, 3103, 3112, 3568
PspCI	CACGTG	1 cut(s)	371
PspEI	GGTNACC	1 cut(s)	3291
PspFI	CCCAGC	3 cut(s)	5, 3506, 3539
PspGI	CCWGG	9 cut(s)	799, 2014, 2530, 2551, 2599, 2849, 3103, 3112, 3568
PspN4I	GGNNCC	8 cut(s)	290, 1050, 1372, 2337, 2607, 2812, 2848, 4098
PspOMI	GGGCCC	1 cut(s)	2846
PspPPI	RGGWCCY	1 cut(s)	797
PspXI	VCTCGAGB	1 cut(s)	997
PsrI	GAACNNNNNNTAC	2 cut(s)	2199, 2231
PstNI	CAGNNNCTG	2 cut(s)	452, 4154
PsuI	RGATCY	5 cut(s)	1800, 2335, 2653, 3373, 3957
PsyI	GACNNNGTC	1 cut(s)	1939
PvuI	CGATCG	1 cut(s)	2170
PvuII	CAGCTG	4 cut(s)	2500, 3514, 4093, 4151
RruI	TCGCGA	1 cut(s)	2145
RsaI	GTAC	6 cut(s)	74, 2987, 3310, 3488, 3849, 4073
RsaNI	GTAC	6 cut(s)	73, 2986, 3309, 3487, 3848, 4072
RseI	CAYNNNNRTG	6 cut(s)	394, 405, 2288, 2799, 2841, 3816
ScaI	AGTACT	1 cut(s)	4073
SchI	GAGTC	7 cut(s)	443, 1304, 2475, 2856, 2919, 3559, 3975
ScrFI	CCNGG	9 cut(s)	801, 2016, 2532, 2553, 2601, 2851, 3105, 3114, 3570
SduI	GDGCHC	5 cut(s)	1278, 1831, 2850, 3097, 4046
SfcI	CTRYAG	3 cut(s)	2277, 2646, 3015
Sfr274I	CTCGAG	1 cut(s)	997
SinI	GGWCC	5 cut(s)	626, 797, 915, 1235, 3344
SlaI	CTCGAG	1 cut(s)	997
SmiMI	CAYNNNNRTG	6 cut(s)	394, 405, 2288, 2799, 2841, 3816
SmlI	CTYRAG	3 cut(s)	997, 1292, 1304
SmoI	CTYRAG	3 cut(s)	997, 1292, 1304
SphI	GCATGC	1 cut(s)	2840
SsiI	CCGC	9 cut(s)	237, 470, 709, 913, 953, 1702, 1824, 2943, 3034
SspI	AATATT	2 cut(s)	1222, 3580
SspMI	CTAG	7 cut(s)	282, 699, 794, 2858, 3122, 3368, 4104
StyD4I	CCNGG	9 cut(s)	799, 2014, 2530, 2551, 2599, 2849, 3103, 3112, 3568
StyI	CCWWGG	2 cut(s)	1374, 3933
TaiI	ACGT	2 cut(s)	373, 2461
TatI	WGTACW	3 cut(s)	72, 3847, 4071
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	6 cut(s)	457, 520, 767, 2223, 3322, 3920
TseFI	GTSAC	8 cut(s)	221, 317, 387, 2241, 2467, 3491, 3643, 4162
TseI	GCWGC	9 cut(s)	101, 1406, 2110, 2963, 3511, 3875, 3991, 4090, 4151
Tsp45I	GTSAC	8 cut(s)	221, 317, 387, 2241, 2467, 3491, 3643, 4162
TspGWI	ACGGA	1 cut(s)	3223
Tth111I	GACNNNGTC	1 cut(s)	1939
Vha464I	CTTAAG	1 cut(s)	1304
VneI	GTGCAC	1 cut(s)	1827
VpaK11BI	GGWCC	5 cut(s)	626, 797, 915, 1235, 3344
XagI	CCTNNNNNAGG	2 cut(s)	2535, 2681
XapI	RAATTY	3 cut(s)	476, 1782, 1990
XceI	RCATGY	5 cut(s)	672, 913, 1662, 2840, 3166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	891
XhoI	CTCGAG	1 cut(s)	997
XmnI	GAANNNNTTC	1 cut(s)	1958
XspI	CTAG	7 cut(s)	282, 699, 794, 2858, 3122, 3368, 4104
ZrmI	AGTACT	1 cut(s)	4073
Zsp2I	ATGCAT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.