FvH4_6g30220

Domain of unknown function (DUF4666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004606
Physical Location & Seq
Reverse (-)
23339189 .. 23339533
345 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30220.t1

Sequence Viewer

Length: 345 bp
ATGTCTTTCAGAAGGCAAGGCTCGTCAGGGTTTGTGTGGGATGACAGGTTCTTGTCCGGAGAGCTAAAGCAGCAACAAGTAGCACAAGACCTAGAGAACGGTGAGGAGAATGAGATTATCATGGTTAAGGATGTTAAGCCACCGAGGCCAATCAAGACTGTACAAAGAAGCCGGTCCAACGGCGGAGGACGCGGCTACCGCGGCTCAGGGAAGATCACGCCGGCTATTGAACCACTGTCGCCGAAGGTCTCTGCATGTGGATTTTGTGGAGGTTTCGGTAAACCTTCTAAGAACAATGTTGTTTGGGGAGCAAAGCCTGGTAAGCGTAACCGATCAGGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4666

Protein Analysis

115

Amino Acids

12.46

Weight (kDa)

10.15

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4666 PF15697 2 - 99 4.2e-26 Domain of unknown function (DUF4666)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 192, 201
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 4 cut(s) 183, 192, 199, 201
AfaI GTAC 2 cut(s) 162, 341
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 1 cut(s) 316
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 253
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 3 cut(s) 71, 193, 202
BlsI GCNGC 3 cut(s) 72, 194, 203
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 143, 199
BsaWI WCCGGW 1 cut(s) 56
Bse118I RCCGGY 2 cut(s) 171, 220
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 143, 199
BseGI GGATG 2 cut(s) 46, 136
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 2 cut(s) 192, 201
BshFI GGCC 1 cut(s) 148
BsiSI CCGG 3 cut(s) 57, 172, 221
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 213, 332
BspACI CCGC 4 cut(s) 183, 192, 199, 201
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 218
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 2 cut(s) 192, 201
BspTNI GGTCTC 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 171, 220
BsrGI TGTACA 1 cut(s) 160
BssAI RCCGGY 2 cut(s) 171, 220
BssECI CCNNGG 2 cut(s) 143, 199
BssMI GATC 2 cut(s) 213, 332
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 101, 160, 237
BstAUI TGTACA 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 205, 288
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 46, 136
BstFNI CGCG 2 cut(s) 192, 201
BstKTI GATC 2 cut(s) 216, 335
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 2 cut(s) 213, 332
BstMWI GCNNNNNNNGC 6 cut(s) 70, 145, 189, 198, 201, 322
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 316
BstUI CGCG 2 cut(s) 192, 201
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 46, 136
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 222
Cfr10I RCCGGY 2 cut(s) 171, 220
Cfr13I GGNCC 1 cut(s) 174
Cfr42I CCGCGG 1 cut(s) 202
CseI GACGC 1 cut(s) 198
Csp6I GTAC 2 cut(s) 161, 340
CviAII CATG 2 cut(s) 121, 255
CviJI RGCY 9 cut(s) 21, 64, 139, 148, 171, 195, 204, 224, 316
CviKI_1 RGCY 9 cut(s) 21, 64, 139, 148, 171, 195, 204, 224, 316
CviQI GTAC 2 cut(s) 161, 340
DdeI CTNAG 2 cut(s) 205, 288
DpnI GATC 2 cut(s) 215, 334
DpnII GATC 2 cut(s) 213, 332
EciI GGCGGA 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 316
FaeI CATG 2 cut(s) 124, 258
FaiI YATR 2 cut(s) 122, 256
FatI CATG 2 cut(s) 120, 254
Fnu4HI GCNGC 3 cut(s) 71, 193, 202
FokI GGATG 2 cut(s) 53, 143
Fsp4HI GCNGC 3 cut(s) 71, 193, 202
FspBI CTAG 1 cut(s) 92
GluI GCNGC 3 cut(s) 71, 193, 202
HaeIII GGCC 1 cut(s) 148
HapII CCGG 3 cut(s) 57, 172, 221
HgaI GACGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 124, 258
HpaII CCGG 3 cut(s) 57, 172, 221
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 2 cut(s) 57, 154
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 6, 238, 294
HpyCH4III ACNGT 3 cut(s) 101, 160, 237
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 145, 189, 198, 201, 322
HpyF3I CTNAG 2 cut(s) 205, 288
Hsp92II CATG 2 cut(s) 124, 258
Kpn2I TCCGGA 1 cut(s) 56
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 213, 332
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 9 cut(s) 12, 31, 70, 185, 192, 234, 303, 321, 330
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 215, 334
MboI GATC 2 cut(s) 213, 332
MboII GAAGA 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 4 cut(s) 97, 138, 179, 263
MroI TCCGGA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 220
MseI TTAA 2 cut(s) 126, 135
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 3 cut(s) 57, 172, 221
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 2 cut(s) 192, 201
MwoI GCNNNNNNNGC 6 cut(s) 70, 145, 189, 198, 201, 322
NaeI GCCGGC 1 cut(s) 222
NdeII GATC 2 cut(s) 213, 332
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 124, 258
NspI RCATGY 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 72, 194, 203
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 2 cut(s) 162, 341
RsaNI GTAC 2 cut(s) 161, 340
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 2 cut(s) 126, 135
SatI GCNGC 3 cut(s) 71, 193, 202
Sau3AI GATC 2 cut(s) 213, 332
Sau96I GGNCC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 318
SetI ASST 6 cut(s) 50, 66, 93, 249, 274, 286
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 1 cut(s) 174
SsiI CCGC 4 cut(s) 183, 192, 199, 201
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 3 cut(s) 101, 160, 237
TatI WGTACW 1 cut(s) 160
TauI GCSGC 2 cut(s) 195, 204
Tru1I TTAA 2 cut(s) 126, 135
Tru9I TTAA 2 cut(s) 126, 135
TscAI CASTG 1 cut(s) 240
TseI GCWGC 1 cut(s) 70
TspRI CASTG 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 174
XceI RCATGY 1 cut(s) 258
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.