Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Forward (+)

6055906 .. 6056471

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G081500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTGGGTTGCAAAGATCTTCAGTGTCGTTTAGGAGGCAAGGCTCTTCAGGGTTTGTGTGGGATGACAAGCACTTATCAAGAGAGCTTGTAGACAAAGTAGCACCGCTGCTAAAAGAAGGAGGAGGAGGAGCACGACAAGACCAAGAGAAGGATGAGATTATAGAGAGAGTTAGGGCACCAAAACCAATCAACACCGTCAGTAGAAGCAGGTCCAACGGTGGGGGACGTGGCTACAGAACTGGGAAGGTCACGCCGGCTATCGAACCTCCGTCGCCAAAGGTCTCTGCATGCGGCTTTTGTGGCGGTTTTGGTATACCGTCGAGAAAGAGTACTAATCTTAGAGCAAGGGCTTGTTTGATTGGTTACAAGTGGAATTTAAGTATGGATTTCTTCAGGAAATCTCAATCATGTACGAAGGAAATTAAGCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666

Protein Analysis

146

Amino Acids

15.93

Weight (kDa)

10.29

Isoelectric Point (pI)

67.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	178
AccI	GTMKAC	2 cut(s)	93, 316
AciI	CCGC	3 cut(s)	107, 294, 306
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	3 cut(s)	6, 33, 379
AfaI	GTAC	2 cut(s)	334, 415
AfiI	CCNNNNNNNGG	2 cut(s)	151, 222
AjiI	CACGTC	1 cut(s)	230
AluBI	AGCT	2 cut(s)	88, 430
AluI	AGCT	2 cut(s)	88, 430
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	2 cut(s)	110, 295
BlsI	GCNGC	2 cut(s)	111, 296
BmcAI	AGTACT	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 222
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	70, 160
BseLI	CCNNNNNNNGG	2 cut(s)	151, 222
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	3 cut(s)	138, 141, 144
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	151, 222
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	136, 181
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	3 cut(s)	107, 294, 306
BspLI	GGNNCC	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	256
BssMI	GATC	1 cut(s)	17
BssNAI	GTATAC	1 cut(s)	317
Bst1107I	GTATAC	1 cut(s)	317
Bst4CI	ACNGT	3 cut(s)	199, 221, 321
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	258, 292
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	70, 160
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	317
BtrI	CACGTC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	70, 160
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	258, 292
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	333, 414
CviAII	CATG	2 cut(s)	291, 411
CviJI	RGCY	8 cut(s)	5, 45, 88, 234, 260, 297, 353, 430
CviKI_1	RGCY	8 cut(s)	5, 45, 88, 234, 260, 297, 353, 430
CviQI	GTAC	2 cut(s)	333, 414
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	3 cut(s)	6, 33, 379
FaeI	CATG	2 cut(s)	294, 414
FaiI	YATR	5 cut(s)	164, 292, 317, 386, 412
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	2 cut(s)	290, 410
FblI	GTMKAC	2 cut(s)	93, 316
Fnu4HI	GCNGC	2 cut(s)	110, 295
FokI	GGATG	2 cut(s)	77, 167
Fsp4HI	GCNGC	2 cut(s)	110, 295
GluI	GCNGC	2 cut(s)	110, 295
GsaI	CCCAGC	1 cut(s)	9
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	294, 414
HindIII	AAGCTT	1 cut(s)	428
HpaII	CCGG	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	94, 317
Hpy188III	TCNNGA	3 cut(s)	81, 324, 397
Hpy8I	GTNNAC	2 cut(s)	94, 317
Hpy99I	CGWCG	2 cut(s)	277, 325
HpyAV	CCTTC	4 cut(s)	113, 145, 241, 412
HpyCH4III	ACNGT	3 cut(s)	199, 221, 321
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	13, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	294, 414
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	36, 196, 228, 270, 382
Lsp1109I	GCAGC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	2 cut(s)	250, 365
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	12, 39, 385
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	2 cut(s)	136, 181
MluCI	AATT	2 cut(s)	376, 423
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	30, 116, 119, 122, 279
MroNI	GCCGGC	1 cut(s)	256
MseI	TTAA	3 cut(s)	380, 426, 432
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	303
NaeI	GCCGGC	1 cut(s)	258
NdeII	GATC	1 cut(s)	17
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	294, 414
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	52
PdiI	GCCGGC	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	111, 296
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	334, 415
RsaNI	GTAC	2 cut(s)	333, 414
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	380, 426, 432
SatI	GCNGC	2 cut(s)	110, 295
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	213
ScaI	AGTACT	1 cut(s)	334
SduI	GDGCHC	2 cut(s)	136, 181
SetI	ASST	7 cut(s)	90, 215, 232, 252, 271, 285, 432
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	213
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	2 cut(s)	376, 423
SsiI	CCGC	3 cut(s)	107, 294, 306
TaaI	ACNGT	3 cut(s)	199, 221, 321
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	264, 323
TasI	AATT	2 cut(s)	376, 423
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	3 cut(s)	380, 426, 432
Tru9I	TTAA	3 cut(s)	380, 426, 432
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	294
XmiI	GTMKAC	2 cut(s)	93, 316
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.