Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Forward (+)

18619196 .. 18619507

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG098700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGGACCGATCGATAATCTTCGGCGCATCCACCAGTAACTGCTCGCCCTGCGGAAGCCTATACATGGACATGACTGCGCTGACGGCGTTCTGTCGAACAAACGGGTGGCGGTGCTCCAGATTCGCCAGAATCGACGGAATCAACGGCTCGACGATCTCGGCCTCGTTCAATCGGCAGAGGAATCGGAGCGTGACGCCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCGGAGTTTCTGGCAGATGAGGATCATCTCTGGGAGAACTTTGCCTCGGGAATCTGTCTTGTCAATGATCTCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.77

Weight (kDa)

11.41

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	202
AciI	CCGC	5 cut(s)	54, 112, 200, 202, 235
AclWI	GGATC	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	42
Ama87I	CYCGRG	2 cut(s)	279, 304
AoxI	GGCC	1 cut(s)	162
AspLEI	GCGC	2 cut(s)	29, 82
AspS9I	GGNCC	1 cut(s)	7
AvaI	CYCGRG	2 cut(s)	279, 304
AvaII	GGWCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	119
BceAI	ACGGC	2 cut(s)	102, 163
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	2 cut(s)	279, 304
BmgT120I	GGNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	103, 244
Bsa29I	ATCGAT	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	200, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	200, 278
BseGI	GGATG	2 cut(s)	29, 210
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	2 cut(s)	279, 304
BslI	CCNNNNNNNGG	1 cut(s)	67
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	2 cut(s)	279, 304
Bsp1286I	GDGCHC	2 cut(s)	119, 222
Bsp143I	GATC	4 cut(s)	11, 156, 255, 300
BspACI	CCGC	5 cut(s)	54, 112, 200, 202, 235
BspANI	GGCC	1 cut(s)	164
BspDI	ATCGAT	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	200, 278
BssMI	GATC	4 cut(s)	11, 156, 255, 300
BssNI	GRCGYC	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	29, 210
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	29, 82
BstKTI	GATC	4 cut(s)	14, 159, 258, 303
BstMBI	GATC	4 cut(s)	11, 156, 255, 300
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 86
BstUI	CGCG	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	164
BsuTUI	ATCGAT	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	29, 210
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	2 cut(s)	29, 82
Cfr13I	GGNCC	1 cut(s)	7
Cfr42I	CCGCGG	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	14
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	67, 73
CviJI	RGCY	4 cut(s)	60, 150, 164, 220
CviKI_1	RGCY	4 cut(s)	60, 150, 164, 220
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	4 cut(s)	13, 158, 257, 302
DpnII	GATC	4 cut(s)	11, 156, 255, 300
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	279, 304
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	70, 76
FaiI	YATR	3 cut(s)	64, 68, 74
FatI	CATG	2 cut(s)	66, 72
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	2 cut(s)	16, 217
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	200
GlaI	GCGC	2 cut(s)	28, 81
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	2 cut(s)	103, 244
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	2 cut(s)	29, 82
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	70, 76
Hin6I	GCGC	2 cut(s)	27, 80
HinP1I	GCGC	2 cut(s)	27, 80
HinfI	GANTC	5 cut(s)	123, 132, 141, 184, 284
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	4 cut(s)	120, 223, 281, 304
Hpy99I	CGWCG	2 cut(s)	140, 157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 86
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	70, 76
HspAI	GCGC	2 cut(s)	27, 80
KspI	CCGCGG	1 cut(s)	203
Kzo9I	GATC	4 cut(s)	11, 156, 255, 300
LmnI	GCTCC	2 cut(s)	122, 189
LpnPI	CCDG	7 cut(s)	49, 64, 133, 142, 208, 229, 249
LweI	GCATC	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	38, 193
MalI	GATC	4 cut(s)	13, 158, 257, 302
MboI	GATC	4 cut(s)	11, 156, 255, 300
MboII	GAAGA	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	119, 222
MnlI	CCTC	5 cut(s)	174, 175, 246, 288, 300
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	51, 86
NdeII	GATC	4 cut(s)	11, 156, 255, 300
NlaIII	CATG	2 cut(s)	70, 76
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	193
PaeR7I	CTCGAG	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	5 cut(s)	123, 132, 141, 184, 284
PkrI	GCNGC	1 cut(s)	201
Ple19I	CGATCG	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	42
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	71
SacII	CCGCGG	1 cut(s)	203
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	4 cut(s)	11, 156, 255, 300
Sau96I	GGNCC	1 cut(s)	7
SduI	GDGCHC	2 cut(s)	119, 222
SetI	ASST	1 cut(s)	311
SfaNI	GCATC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	304
Sfr303I	CCGCGG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SsiI	CCGC	5 cut(s)	54, 112, 200, 202, 235
TaqI	TCGA	5 cut(s)	14, 97, 135, 152, 305
TaqII	GACCGA	1 cut(s)	24
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	5 cut(s)	123, 132, 141, 184, 284
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.