Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Reverse (-)

57945647 .. 57946054

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG380200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTCCAGATTCGCCAGAATCGACTGAATCAACGGCTCGACGATCTCGGCCTTGTTCAATCGGCAGAGGAATCGGAGCGTGACGCCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCAGAGGTTCTGGCAGTTGAGGATCACCTCCAGGAGAACTTTGCCTCGGAAATCTGTCTTGTTAATGATCTCGAGGTAGAGGAAGAGAAGCTTCTGGACGGTGTGGTCCTCGAAGGGGAGGACGTAGCGGATAATTATGATGAAGAGCTGGGGAATTGTGTCGCCGTTGAGCAAGATCATGATTGCCTTCTTCATGGCTTCGATCTTGGCTTCAACGTCTTTTCCTTCGAGAGCCGGAGACTATCGATTGGATCTTGTCCTAGATGGGTGCCCAGCCATGTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.24

Weight (kDa)

4.2

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	388
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	87, 89, 248
AclWI	GGATC	2 cut(s)	150, 379
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	59, 334
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	211, 268
AluI	AGCT	2 cut(s)	211, 268
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	150, 379
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	109
BccI	CCATC	1 cut(s)	378
BceAI	ACGGC	2 cut(s)	50, 269
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	152
BpmI	CTGGAG	2 cut(s)	131, 134
Bsa29I	ATCGAT	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	87, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	152
BseCI	ATCGAT	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	87, 165
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	393
BseYI	CCCAGC	2 cut(s)	268, 392
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	388
BshVI	ATCGAT	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	109, 393
Bsp143I	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
BspACI	CCGC	3 cut(s)	87, 89, 248
BspANI	GGCC	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	150, 379
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	87, 165
BssMI	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	2 cut(s)	198, 258
BstACI	GRCGYC	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	6 cut(s)	46, 145, 190, 298, 325, 374
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	97
CciI	TCATGA	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	226
Cfr42I	CCGCGG	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	365
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	3 cut(s)	299, 314, 398
CviJI	RGCY	9 cut(s)	37, 51, 107, 211, 268, 318, 330, 354, 396
CviKI_1	RGCY	9 cut(s)	37, 51, 107, 211, 268, 318, 330, 354, 396
CviQI	GTAC	1 cut(s)	95
DpnI	GATC	6 cut(s)	45, 144, 189, 297, 324, 373
DpnII	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	198, 258
EarI	CTCTTC	2 cut(s)	198, 258
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	3 cut(s)	302, 317, 401
FaiI	YATR	4 cut(s)	258, 300, 315, 399
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	3 cut(s)	298, 313, 397
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	2 cut(s)	272, 396
GsuI	CTGGAG	2 cut(s)	131, 134
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	302, 317, 401
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	10, 19, 28, 71
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	3 cut(s)	76, 169, 404
Hpy188III	TCNNGA	6 cut(s)	7, 110, 191, 215, 299, 349
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	227, 317, 355
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	243, 336
HpyCH4V	TGCA	1 cut(s)	122
HpySE526I	ACGT	2 cut(s)	243, 336
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	302, 317, 401
KspI	CCGCGG	1 cut(s)	90
Kzo9I	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	9, 76
LpnPI	CCDG	9 cut(s)	20, 29, 95, 116, 137, 164, 200, 254, 368
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	243, 336
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	6 cut(s)	45, 144, 189, 297, 324, 373
MboI	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
MboII	GAAGA	3 cut(s)	215, 275, 302
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	109, 393
MluCI	AATT	2 cut(s)	253, 274
MnlI	CCTC	9 cut(s)	61, 118, 133, 158, 175, 187, 193, 232, 239
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	89
NdeII	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
NlaIII	CATG	3 cut(s)	302, 317, 401
NlaIV	GGNNCC	1 cut(s)	390
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PfeI	GAWTC	4 cut(s)	10, 19, 28, 71
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	268, 392
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SacII	CCGCGG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	6 cut(s)	43, 142, 187, 295, 322, 371
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	109, 393
SetI	ASST	7 cut(s)	129, 150, 198, 213, 246, 270, 339
Sfr274I	CTCGAG	1 cut(s)	191
Sfr303I	CCGCGG	1 cut(s)	90
SgrBI	CCGCGG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	253, 274
SsiI	CCGC	3 cut(s)	87, 89, 248
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	2 cut(s)	246, 339
TaqI	TCGA	7 cut(s)	22, 39, 192, 231, 321, 348, 365
TasI	AATT	2 cut(s)	253, 274
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	4 cut(s)	10, 19, 28, 71
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	276, 302
VpaK11BI	GGWCC	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.