Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Forward (+)

49021340 .. 49024750

Gene Structure 3411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGGACCGATCGATAATCTCCGGCGCATCCACCAGTAACTGCTCACCCTGCGGAAGCCTATACACAGACATGACTGCGCTGACGGCATTCGCCAGAATCGACGCTCAACGGCTAGACGATCTCGGCCTCGTTCAATCGGCAAAGGAATCGGAGCGTGACGCCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCAGAGGTTCTGGCAGCTGAGGATCATCTCCGGGAGAACTTTGCCTCGGGAATCTGTCTTGTCAATGATCTCGAGGTAGAGGAGGAGAAACTTCTGGACGGTGTGGTCCTCGAAGGGGAGGACGTAGCGGATAATAGTGATGAAGAGCTGGGGAATTGTGTCGCCGTTGAGCAAGAGCATGATGGCCTTCTTCATGGCTTCAATCTTGGCTTCGATGTCGTTTCCTTCGAGAGCCGGAGACTATCGATCGGATCAACTCCAGTTAATAAGAGGGTCTTAATGACTGGGCTAGAGTTTAGGGGAAGACGATCGGTGTGTCTTTGGGTGAAGAGTGGCAGAGGTTTTAGGGAAGATGACGGGGATTTGGTTGTGGCAGGAGAGTGGAGTAGGCTGAGGCCGCCGAGCTTGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGGTCAGTTTGAGTGCATTTGCGTTCTTGTTTTCGGAGCTTGTGCAATACAGCCAAACACAGCTAGAATCTGGTGCTTCTAATTCTTCAAGTGATGACAAGGATGAGAGAGTCAAGAGAAGTCATGTGAGGTACCACAGGCACCATAGGAGGGCAGATTCTGATCTTTCTGACTCTAGTGATGATGATCAGAGAAGAATCAGAAGAAGTCATGCAAAGCACCCTAAATACCACCGGCAGTTGAAATCTGTTTCTTCTGATTCTTCTAGTTATGAGGATGGTGAGATTAGAAGGAAAAGTCGTGCAAAGCACCATAAATGTCATAGGCGACCAAATAGTGTTGATTCAAGGTCATCGGAGTCAGATTCGTATATGCGTGACAGAAGAAGCAGATCTTTAGGGAAGTCATCAGATGACAACCATGATGAGGCAGGTAAACATTTGAAGGACAAGAAAAATGGCCACCACCATCATCATAGACATGGTCATAATCATTACTCAGGAGAGGAGAAAGATCACCATCATCGGGATTCAGTTAAGCCCCATGGAAAGCACATCAAAGACCACAGTAGAAATGGAACTGATGACATTAATGATGGTAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

416

Amino Acids

46.66

Weight (kDa)

6.35

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	1061
Acc65I	GGTACC	1 cut(s)	771
AccB1I	GGYRCC	2 cut(s)	771, 780
AccII	CGCG	1 cut(s)	167
AciI	CCGC	5 cut(s)	54, 165, 167, 326, 596
AclWI	GGATC	2 cut(s)	228, 457
AcoI	YGGCCR	1 cut(s)	1099
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	174, 773
AfiI	CCNNNNNNNGG	4 cut(s)	313, 790, 1066, 1165
AgsI	TTSAA	6 cut(s)	137, 400, 729, 883, 987, 1084
AluBI	AGCT	5 cut(s)	215, 346, 603, 679, 703
AluI	AGCT	5 cut(s)	215, 346, 603, 679, 703
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	228, 457
AlwNI	CAGNNNCTG	2 cut(s)	42, 800
Ama87I	CYCGRG	2 cut(s)	244, 269
AoxI	GGCC	4 cut(s)	127, 382, 593, 1099
ApeKI	GCWGC	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
AseI	ATTAAT	1 cut(s)	1230
Asp718I	GGTACC	1 cut(s)	771
AspLEI	GCGC	2 cut(s)	29, 82
AspS9I	GGNCC	2 cut(s)	7, 304
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	4 cut(s)	39, 535, 932, 1148
AvaI	CYCGRG	2 cut(s)	244, 269
AvaII	GGWCC	2 cut(s)	7, 304
BalI	TGGCCA	1 cut(s)	1101
BanI	GGYRCC	2 cut(s)	771, 780
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	508, 644
BbvCI	CCTCAGC	2 cut(s)	216, 590
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	5 cut(s)	374, 911, 1116, 1167, 1229
BceAI	ACGGC	3 cut(s)	102, 128, 347
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	5 cut(s)	116, 488, 704, 816, 906
BfuAI	ACCTGC	1 cut(s)	1061
BglII	AGATCT	1 cut(s)	1031
BisI	GCNGC	3 cut(s)	165, 213, 596
BlsI	GCNGC	3 cut(s)	166, 214, 597
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	7, 304
BmeT110I	CYCGRG	2 cut(s)	244, 269
BmgT120I	GGNCC	2 cut(s)	7, 304
BmiI	GGNNCC	2 cut(s)	773, 782
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	2 cut(s)	508, 644
BpmI	CTGGAG	2 cut(s)	209, 441
Bpu10I	CCTNAGC	2 cut(s)	216, 590
BpuMI	CCSGG	1 cut(s)	230
Bsa29I	ATCGAT	2 cut(s)	14, 443
BsaBI	GATNNNNATC	3 cut(s)	801, 825, 1158
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	165, 243, 1183
Bsc4I	CCNNNNNNNGG	4 cut(s)	313, 790, 1066, 1165
Bse118I	RCCGGY	1 cut(s)	873
Bse1I	ACTGG	3 cut(s)	36, 458, 487
Bse8I	GATNNNNATC	3 cut(s)	801, 825, 1158
BseCI	ATCGAT	2 cut(s)	14, 443
BseDI	CCNNGG	3 cut(s)	165, 243, 1183
BseGI	GGATG	4 cut(s)	29, 175, 748, 922
BseJI	GATNNNNATC	3 cut(s)	801, 825, 1158
BseLI	CCNNNNNNNGG	4 cut(s)	313, 790, 1066, 1165
BseMII	CTCAG	3 cut(s)	207, 581, 1152
BseNI	ACTGG	3 cut(s)	36, 458, 487
BseRI	GAGGAG	3 cut(s)	293, 296, 1160
BseXI	GCAGC	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	167
Bsh1285I	CGRYCG	3 cut(s)	14, 447, 509
BshFI	GGCC	4 cut(s)	129, 384, 595, 1101
BshNI	GGYRCC	2 cut(s)	771, 780
BshVI	ATCGAT	2 cut(s)	14, 443
BsiEI	CGRYCG	3 cut(s)	14, 447, 509
BsiHKCI	CYCGRG	2 cut(s)	244, 269
BsiSI	CCGG	4 cut(s)	24, 229, 433, 874
BslI	CCNNNNNNNGG	4 cut(s)	313, 790, 1066, 1165
BsmAI	GTCTC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	129, 384, 595, 1101
BsoBI	CYCGRG	2 cut(s)	244, 269
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	1183
BspACI	CCGC	5 cut(s)	54, 165, 167, 326, 596
BspANI	GGCC	4 cut(s)	129, 384, 595, 1101
BspCNI	CTCAG	3 cut(s)	208, 582, 1151
BspDI	ATCGAT	2 cut(s)	14, 443
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	773, 782
BspMI	ACCTGC	1 cut(s)	1061
BspPI	GGATC	2 cut(s)	228, 457
BspQI	GCTCTTC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	771, 780
BsrFI	RCCGGY	1 cut(s)	873
BsrI	ACTGG	3 cut(s)	36, 458, 487
BssAI	RCCGGY	1 cut(s)	873
BssECI	CCNNGG	3 cut(s)	165, 243, 1183
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	1183
Bst4CI	ACNGT	4 cut(s)	299, 622, 643, 1208
Bst6I	CTCTTC	2 cut(s)	336, 521
BstACI	GRCGYC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	216, 590, 1138
BstDSI	CCRYGG	2 cut(s)	165, 1183
BstF5I	GGATG	4 cut(s)	29, 175, 748, 922
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	29, 82
BstMAI	GTCTC	1 cut(s)	430
BstMCI	CGRYCG	3 cut(s)	14, 447, 509
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 86, 595
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	2 cut(s)	508, 644
BstX2I	RGATCY	1 cut(s)	1031
BstYI	RGATCY	1 cut(s)	1031
Bsu15I	ATCGAT	2 cut(s)	14, 443
BsuRI	GGCC	4 cut(s)	129, 384, 595, 1101
BsuTUI	ATCGAT	2 cut(s)	14, 443
BtgI	CCRYGG	2 cut(s)	165, 1183
BtsCI	GGATG	4 cut(s)	29, 175, 748, 922
BveI	ACCTGC	1 cut(s)	1061
CaiI	CAGNNNCTG	2 cut(s)	42, 800
CfoI	GCGC	2 cut(s)	29, 82
Cfr10I	RCCGGY	1 cut(s)	873
Cfr13I	GGNCC	2 cut(s)	7, 304
Cfr42I	CCGCGG	1 cut(s)	168
ClaI	ATCGAT	2 cut(s)	14, 443
CseI	GACGC	2 cut(s)	113, 170
Csp6I	GTAC	2 cut(s)	173, 772
CviAII	CATG	8 cut(s)	73, 377, 392, 764, 851, 1061, 1121, 1184
CviQI	GTAC	2 cut(s)	173, 772
DdeI	CTNAG	3 cut(s)	216, 590, 1138
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	1099
Eam1104I	CTCTTC	2 cut(s)	336, 521
EarI	CTCTTC	2 cut(s)	336, 521
Eco130I	CCWWGG	1 cut(s)	1183
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	7, 304
Eco88I	CYCGRG	2 cut(s)	244, 269
EcoT14I	CCWWGG	1 cut(s)	1183
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	1183
FaeI	CATG	8 cut(s)	76, 380, 395, 767, 854, 1064, 1124, 1187
FalI	AAGNNNNNCTT	4 cut(s)	458, 490, 1018, 1050
FatI	CATG	8 cut(s)	72, 376, 391, 763, 850, 1060, 1120, 1183
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	3 cut(s)	165, 213, 596
FokI	GGATG	4 cut(s)	16, 182, 755, 929
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	165, 213, 596
FspBI	CTAG	5 cut(s)	116, 488, 704, 816, 906
GlaI	GCGC	2 cut(s)	28, 81
GluI	GCNGC	3 cut(s)	165, 213, 596
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	209, 441
HaeIII	GGCC	4 cut(s)	129, 384, 595, 1101
HapII	CCGG	4 cut(s)	24, 229, 433, 874
HgaI	GACGC	2 cut(s)	113, 170
HhaI	GCGC	2 cut(s)	29, 82
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	8 cut(s)	76, 380, 395, 767, 854, 1064, 1124, 1187
Hin6I	GCGC	2 cut(s)	27, 80
HinP1I	GCGC	2 cut(s)	27, 80
HpaII	CCGG	4 cut(s)	24, 229, 433, 874
HphI	GGTGA	4 cut(s)	39, 535, 932, 1148
Hpy166II	GTNNAC	1 cut(s)	1076
Hpy188III	TCNNGA	9 cut(s)	188, 246, 269, 293, 427, 631, 754, 1140, 1166
Hpy8I	GTNNAC	1 cut(s)	1076
Hpy99I	CGWCG	3 cut(s)	107, 619, 622
HpyAV	CCTTC	5 cut(s)	305, 395, 433, 924, 1078
HpyCH4III	ACNGT	4 cut(s)	299, 622, 643, 1208
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	5 cut(s)	200, 656, 685, 854, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 86, 595
HpyF3I	CTNAG	3 cut(s)	216, 590, 1138
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	8 cut(s)	76, 380, 395, 767, 854, 1064, 1124, 1187
HspAI	GCGC	2 cut(s)	27, 80
KpnI	GGTACC	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	826
KspI	CCGCGG	1 cut(s)	168
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	154, 676
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	5 cut(s)	116, 488, 704, 816, 906
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	38, 158, 1016
MflI	RGATCY	1 cut(s)	1031
MhlI	GDGCHC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	1101
MluCI	AATT	2 cut(s)	352, 721
MluNI	TGGCCA	1 cut(s)	1101
MlyI	GAGTC	3 cut(s)	759, 806, 1007
Mox20I	TGGCCA	1 cut(s)	1101
MscI	TGGCCA	1 cut(s)	1101
MseI	TTAA	4 cut(s)	462, 476, 1176, 1230
MslI	CAYNNNNRTG	2 cut(s)	71, 1119
Msp20I	TGGCCA	1 cut(s)	1101
MspA1I	CMGCKG	2 cut(s)	167, 215
MspI	CCGG	4 cut(s)	24, 229, 433, 874
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	89
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	51, 86, 595
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	1183
NlaIII	CATG	8 cut(s)	76, 380, 395, 767, 854, 1064, 1124, 1187
NlaIV	GGNNCC	2 cut(s)	773, 782
NmeAIII	GCCGAG	2 cut(s)	105, 624
NmuCI	GTSAC	2 cut(s)	158, 1016
PaeR7I	CTCGAG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 423, 623
PctI	GAATGC	1 cut(s)	89
PflFI	GACNNNGTC	1 cut(s)	1122
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	166, 214, 597
Ple19I	CGATCG	3 cut(s)	14, 447, 509
PleI	GAGTC	3 cut(s)	758, 806, 1006
PpsI	GAGTC	3 cut(s)	758, 806, 1006
PshBI	ATTAAT	1 cut(s)	1230
PspFI	CCCAGC	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	773, 782
PspPI	GGNCC	2 cut(s)	7, 304
PstNI	CAGNNNCTG	2 cut(s)	42, 800
PsuI	RGATCY	1 cut(s)	1031
PsyI	GACNNNGTC	1 cut(s)	1122
PvuI	CGATCG	3 cut(s)	14, 447, 509
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	174, 773
RsaNI	GTAC	2 cut(s)	173, 772
RseI	CAYNNNNRTG	2 cut(s)	71, 1119
SacII	CCGCGG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	462, 476, 1176, 1230
SatI	GCNGC	3 cut(s)	165, 213, 596
Sau96I	GGNCC	2 cut(s)	7, 304
SchI	GAGTC	3 cut(s)	759, 806, 1007
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	2 cut(s)	7, 304
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	2 cut(s)	71, 1119
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	352, 721
SsiI	CCGC	5 cut(s)	54, 165, 167, 326, 596
SspMI	CTAG	5 cut(s)	116, 488, 704, 816, 906
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	1183
TaaI	ACNGT	4 cut(s)	299, 622, 643, 1208
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	8 cut(s)	14, 102, 270, 309, 411, 426, 443, 632
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	352, 721
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	2 cut(s)	167, 598
Tru1I	TTAA	4 cut(s)	462, 476, 1176, 1230
Tru9I	TTAA	4 cut(s)	462, 476, 1176, 1230
TseFI	GTSAC	2 cut(s)	158, 1016
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	2 cut(s)	158, 1016
TspDTI	ATGAA	2 cut(s)	354, 380
Tth111I	GACNNNGTC	1 cut(s)	1122
VpaK11BI	GGWCC	2 cut(s)	7, 304
VspI	ATTAAT	1 cut(s)	1230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1211
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	5 cut(s)	116, 488, 704, 816, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.