RLG00000033413

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004606
Physical Location & Seq
Reverse (-)
26883361 .. 26886966
3606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033413

Sequence Viewer

Length: 891 bp
ATGACTGCGCTGACGGCATTCCGTCGAACGAAAGGGTGGCGGTGCTCCAAATTCGCCAGAATCGACGCTCAACGGCTACACGATCTTGGCCTCGTTCAATCGGCAGAGGAATCGGAGCGTGACGCCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCGGAGGTTTTGGCAGTTGAGGATCATCTCCAGGAGAACTTTGCCTCGGGAATCTGTCTTGTCAATGATCTCGAGGTAGAGGAGGAGAAGCTTCTGGACGGTGTGGTCCTCGGAGGGGAGGACGTAGCGGATAATGGTGATGAAGAGCTGGGGAATTGTGTCTCCGTTGAGCAAGATCATGATTGCCTTCTTCATGGCTTCAATCTTGGCTTCGATGTTGTTTCCTTCGAGAGCCGGAGACTATCGATCGCTTTTCAAGAGCACTCGTCCGGCAGGCCCAGAGACGCTGCCGGCCTTTTGGTCGTGGTGATGCTACGGTGCTGCCGGATGGGTGGTGACTACAGAGTTGATGGTGGTTCGTGGGTTTCTAGACGGGGAAGAAACCAACTTGTTTCACCGGCGTTTCATCCTTTTTCGATCCTCTTTGACAGCGTTGTAGGTCACGGCAGAGTTCCGGGGAGGGTGGTTGGAGACTGTGGAGGCGCTTGTTGGTATCCAGTAGACGGTGGGGTGTATTGGGTGTTCGTACCCAATCGGATCGGACCTGGTAGGCATCCAGATTTGGTTACTTGGATGGCGACGGCGATGGGAGGTGGCTATCCTGGAAGGGTGGCGACGGGGGTCGTGGCTGCTGCTCGGGCATACATGCTGCAGGGGTGGAGATGGGATTGGGCCTGGTTGTTCTTGTTGGGCTTCATTCTTGGGCTAAGTTCTCCTTTGGACCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.44

Weight (kDa)

5.11

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 128
AciI CCGC 5 cut(s) 40, 126, 128, 161, 287
AclWI GGATC 3 cut(s) 189, 571, 704
AcsI RAATTY 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 135, 687
AfiI CCNNNNNNNGG 2 cut(s) 274, 662
AgsI TTSAA 3 cut(s) 98, 361, 416
AjnI CCWGG 4 cut(s) 189, 703, 760, 833
AluBI AGCT 2 cut(s) 250, 307
AluI AGCT 2 cut(s) 250, 307
Alw21I GWGCWC 2 cut(s) 47, 423
Alw26I GTCTC 4 cut(s) 325, 391, 435, 624
AlwI GGATC 3 cut(s) 189, 571, 704
Ama87I CYCGRG 3 cut(s) 205, 230, 795
AoxI GGCC 4 cut(s) 88, 434, 451, 831
ApeKI GCWGC 5 cut(s) 446, 480, 788, 791, 808
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 2 cut(s) 10, 644
AspS9I GGNCC 5 cut(s) 265, 435, 701, 831, 880
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 4 cut(s) 308, 478, 506, 546
AvaI CYCGRG 3 cut(s) 205, 230, 795
AvaII GGWCC 3 cut(s) 265, 701, 880
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 47, 423
BbvI GCAGC 5 cut(s) 433, 467, 775, 778, 795
BccI CCATC 5 cut(s) 481, 503, 727, 739, 816
BceAI ACGGC 4 cut(s) 30, 89, 619, 756
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BciT130I CCWGG 4 cut(s) 191, 705, 762, 835
BciVI GTATCC 1 cut(s) 663
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 4 cut(s) 325, 391, 435, 624
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 2 cut(s) 499, 809
BfoI RGCGCY 1 cut(s) 645
BfuI GTATCC 1 cut(s) 663
BisI GCNGC 6 cut(s) 126, 447, 481, 789, 792, 809
BlsI GCNGC 6 cut(s) 127, 448, 482, 790, 793, 810
Bme1390I CCNGG 5 cut(s) 191, 615, 705, 762, 835
Bme18I GGWCC 3 cut(s) 265, 701, 880
BmeT110I CYCGRG 3 cut(s) 205, 230, 795
BmgT120I GGNCC 5 cut(s) 265, 435, 701, 831, 880
BmrFI CCNGG 5 cut(s) 191, 615, 705, 762, 835
BmsI GCATC 2 cut(s) 459, 721
BoxI GACNNNNGTC 1 cut(s) 779
BpmI CTGGAG 2 cut(s) 170, 173
BpuMI CCSGG 1 cut(s) 615
Bsa29I ATCGAT 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 126, 204, 268, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 662
Bse118I RCCGGY 2 cut(s) 449, 556
Bse1I ACTGG 1 cut(s) 656
BseBI CCWGG 4 cut(s) 191, 705, 762, 835
BseCI ATCGAT 1 cut(s) 404
BseDI CCNNGG 4 cut(s) 126, 204, 268, 614
BseGI GGATG 5 cut(s) 136, 492, 565, 712, 738
BseLI CCNNNNNNNGG 2 cut(s) 274, 662
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 2 cut(s) 254, 257
BseXI GCAGC 5 cut(s) 433, 467, 775, 778, 795
BseYI CCCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 90, 436, 453, 833
BshVI ATCGAT 1 cut(s) 404
BsiEI CGRYCG 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 47, 423
BsiHKCI CYCGRG 3 cut(s) 205, 230, 795
BsiSI CCGG 6 cut(s) 394, 429, 450, 484, 557, 614
BslI CCNNNNNNNGG 2 cut(s) 274, 662
BsmAI GTCTC 4 cut(s) 325, 391, 435, 624
BsmBI CGTCTC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 4 cut(s) 90, 436, 453, 833
BsoBI CYCGRG 3 cut(s) 205, 230, 795
Bsp1286I GDGCHC 3 cut(s) 47, 148, 423
Bsp143I GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
BspACI CCGC 5 cut(s) 40, 126, 128, 161, 287
BspANI GGCC 4 cut(s) 90, 436, 453, 833
BspDI ATCGAT 1 cut(s) 404
BspFNI CGCG 1 cut(s) 128
BspHI TCATGA 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 813
BspPI GGATC 3 cut(s) 189, 571, 704
BspQI GCTCTTC 1 cut(s) 297
BsrFI RCCGGY 2 cut(s) 449, 556
BsrI ACTGG 1 cut(s) 656
BssAI RCCGGY 2 cut(s) 449, 556
BssECI CCNNGG 4 cut(s) 126, 204, 268, 614
BssMI GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 4 cut(s) 191, 705, 762, 835
Bst4CI ACNGT 4 cut(s) 260, 477, 635, 665
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 434, 451
BstDEI CTNAG 1 cut(s) 866
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 5 cut(s) 136, 492, 565, 712, 738
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 2 cut(s) 10, 644
BstKTI GATC 7 cut(s) 85, 184, 229, 337, 408, 579, 699
BstMAI GTCTC 4 cut(s) 325, 391, 435, 624
BstMBI GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 2 cut(s) 14, 797
BstNI CCWGG 4 cut(s) 191, 705, 762, 835
BstNSI RCATGY 1 cut(s) 808
BstPAI GACNNNNGTC 1 cut(s) 779
BstSCI CCNGG 5 cut(s) 189, 613, 703, 760, 833
BstSFI CTRYAG 2 cut(s) 499, 809
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 5 cut(s) 433, 467, 775, 778, 795
Bsu15I ATCGAT 1 cut(s) 404
BsuI GTATCC 1 cut(s) 663
BsuRI GGCC 4 cut(s) 90, 436, 453, 833
BsuTUI ATCGAT 1 cut(s) 404
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 758
BtsCI GGATG 5 cut(s) 136, 492, 565, 712, 738
Cac8I GCNNGC 2 cut(s) 434, 451
CciI TCATGA 1 cut(s) 337
CfoI GCGC 2 cut(s) 10, 644
Cfr10I RCCGGY 2 cut(s) 449, 556
Cfr13I GGNCC 5 cut(s) 265, 435, 701, 831, 880
Cfr42I CCGCGG 1 cut(s) 129
ClaI ATCGAT 1 cut(s) 404
CseI GACGC 3 cut(s) 74, 131, 452
CsiI ACCWGGT 1 cut(s) 703
Csp6I GTAC 2 cut(s) 134, 686
CviAII CATG 4 cut(s) 338, 353, 805, 884
CviQI GTAC 2 cut(s) 134, 686
DdeI CTNAG 1 cut(s) 866
DpnI GATC 7 cut(s) 84, 183, 228, 336, 407, 578, 698
DpnII GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 3 cut(s) 265, 701, 880
Eco88I CYCGRG 3 cut(s) 205, 230, 795
EcoRII CCWGG 4 cut(s) 189, 703, 760, 833
EcoT38I GRGCYC 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 4 cut(s) 341, 356, 808, 887
FaiI YATR 5 cut(s) 339, 354, 802, 806, 885
FalI AAGNNNNNCTT 2 cut(s) 859, 891
FatI CATG 4 cut(s) 337, 352, 804, 883
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 6 cut(s) 126, 447, 481, 789, 792, 809
FokI GGATG 5 cut(s) 143, 499, 552, 699, 745
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 6 cut(s) 126, 447, 481, 789, 792, 809
FspBI CTAG 1 cut(s) 528
GlaI GCGC 2 cut(s) 9, 643
GluI GCNGC 6 cut(s) 126, 447, 481, 789, 792, 809
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 170, 173
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 4 cut(s) 90, 436, 453, 833
HapII CCGG 6 cut(s) 394, 429, 450, 484, 557, 614
HgaI GACGC 3 cut(s) 74, 131, 452
HhaI GCGC 2 cut(s) 10, 644
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 341, 356, 808, 887
Hin6I GCGC 2 cut(s) 8, 642
HinP1I GCGC 2 cut(s) 8, 642
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 3 cut(s) 60, 110, 210
HpaII CCGG 6 cut(s) 394, 429, 450, 484, 557, 614
HphI GGTGA 4 cut(s) 308, 478, 506, 546
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 4 cut(s) 115, 272, 696, 701
Hpy188III TCNNGA 9 cut(s) 149, 207, 230, 254, 338, 388, 416, 528, 716
Hpy8I GTNNAC 1 cut(s) 661
Hpy99I CGWCG 4 cut(s) 27, 68, 742, 778
HpyAV CCTTC 3 cut(s) 356, 394, 759
HpyCH4III ACNGT 4 cut(s) 260, 477, 635, 665
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 797
HpyF3I CTNAG 1 cut(s) 866
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 341, 356, 808, 887
HspAI GCGC 2 cut(s) 8, 642
KroI GCCGGC 1 cut(s) 449
KroNI GCCGGC 1 cut(s) 451
KspI CCGCGG 1 cut(s) 129
Kzo9I GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 50, 115
Lsp1109I GCAGC 5 cut(s) 433, 467, 775, 778, 795
LweI GCATC 2 cut(s) 459, 721
MabI ACCWGGT 1 cut(s) 703
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 4 cut(s) 119, 494, 599, 724
MalI GATC 7 cut(s) 84, 183, 228, 336, 407, 578, 698
MboI GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
MboII GAAGA 3 cut(s) 314, 341, 549
MhlI GDGCHC 3 cut(s) 47, 148, 423
MluCI AATT 2 cut(s) 50, 313
MmeI TCCRAC 1 cut(s) 607
MroNI GCCGGC 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 6 cut(s) 394, 429, 450, 484, 557, 614
MspR9I CCNGG 5 cut(s) 191, 615, 705, 762, 835
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 4 cut(s) 191, 705, 762, 835
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 14, 797
NaeI GCCGGC 1 cut(s) 451
NciI CCSGG 1 cut(s) 615
NdeII GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
NgoMIV GCCGGC 1 cut(s) 449
NlaIII CATG 4 cut(s) 341, 356, 808, 887
NmuCI GTSAC 3 cut(s) 119, 494, 599
NspI RCATGY 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 230
PagI TCATGA 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 17
PdiI GCCGGC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 60, 110, 210
PfoI TCCNGGA 2 cut(s) 189, 760
PkrI GCNGC 6 cut(s) 127, 448, 482, 790, 793, 810
Ple19I CGATCG 1 cut(s) 408
PshAI GACNNNNGTC 1 cut(s) 779
Psp6I CCWGG 4 cut(s) 189, 703, 760, 833
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 4 cut(s) 189, 703, 760, 833
PspPI GGNCC 5 cut(s) 265, 435, 701, 831, 880
PsrI GAACNNNNNNTAC 2 cut(s) 665, 697
PstI CTGCAG 1 cut(s) 813
PvuI CGATCG 1 cut(s) 408
RsaI GTAC 2 cut(s) 135, 687
RsaNI GTAC 2 cut(s) 134, 686
SacII CCGCGG 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 297
SatI GCNGC 6 cut(s) 126, 447, 481, 789, 792, 809
Sau3AI GATC 7 cut(s) 82, 181, 226, 334, 405, 576, 696
Sau96I GGNCC 5 cut(s) 265, 435, 701, 831, 880
ScrFI CCNGG 5 cut(s) 191, 615, 705, 762, 835
SduI GDGCHC 3 cut(s) 47, 148, 423
SetI ASST 8 cut(s) 168, 237, 252, 285, 309, 601, 706, 754
SexAI ACCWGGT 1 cut(s) 703
SfaNI GCATC 2 cut(s) 459, 721
SfcI CTRYAG 2 cut(s) 499, 809
Sfr274I CTCGAG 1 cut(s) 230
Sfr303I CCGCGG 1 cut(s) 129
SgrAI CRCCGGYG 1 cut(s) 556
SgrBI CCGCGG 1 cut(s) 129
SinI GGWCC 3 cut(s) 265, 701, 880
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 50, 313
SsiI CCGC 5 cut(s) 40, 126, 128, 161, 287
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 5 cut(s) 189, 613, 703, 760, 833
TaaI ACNGT 4 cut(s) 260, 477, 635, 665
TaiI ACGT 1 cut(s) 285
TaqI TCGA 7 cut(s) 25, 63, 231, 372, 387, 404, 575
TasI AATT 2 cut(s) 50, 313
TatI WGTACW 1 cut(s) 133
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 3 cut(s) 60, 110, 210
TseFI GTSAC 3 cut(s) 119, 494, 599
TseI GCWGC 5 cut(s) 446, 480, 788, 791, 808
Tsp45I GTSAC 3 cut(s) 119, 494, 599
TspDTI ATGAA 4 cut(s) 315, 341, 554, 844
TspGWI ACGGA 2 cut(s) 11, 313
VpaK11BI GGWCC 3 cut(s) 265, 701, 880
XapI RAATTY 1 cut(s) 50
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 1 cut(s) 808
XhoI CTCGAG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.