Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Reverse (-)

45218495 .. 45219655

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCACAGACATGACTGCGCTGACGGCGTTCCGTCGAACGAACGGGTGGTGGTGCTCCAGATTTGCCAGAATCGACGGAATCAACTACTCGACGATCTCGGCCTCGTTCAATCGGCAGAGGAATCGGAGCGTGGCGCCGCGGATGTACTCGTTAGGGCTTTGGAGATTGTTGCGGAGGTTCTGGCAGTTGAGGATCATCTCCGGGAGAACTTTGCCTCCGGAATCTGTCTTGTCAATGATCTCGAGGTAGAGGAGGAGAAGCTTCTGGACGGTGTGGTCCTCGGAGGGAAGGACGTAGCGGATAATGGTGATGAAGAGCGGGGGAATTGTGTCGCCGTTGAGCAAGATCATGATTGCCTTCTTCATGGCTTTGATCTTGGCTTCGATGTCGTTTCCTTCAAGAGCCGGAGACTATCGATCGATGAAGTGCAATCAATTCAATCCAGCATATGCTTAAAGGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.06

Weight (kDa)

4.48

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	319
AccII	CGCG	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	5 cut(s)	138, 140, 173, 299, 319
AclWI	GGATC	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	110, 400, 440
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	1 cut(s)	100
AspLEI	GCGC	2 cut(s)	20, 137
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	57
BceAI	ACGGC	2 cut(s)	40, 320
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	403
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	203
Bsa29I	ATCGAT	2 cut(s)	416, 420
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	138, 280
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
BseAI	TCCGGA	1 cut(s)	218
BseCI	ATCGAT	2 cut(s)	416, 420
BseDI	CCNNGG	2 cut(s)	138, 280
BseGI	GGATG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	266, 269
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	134
BshVI	ATCGAT	2 cut(s)	416, 420
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	202, 219, 406
BsmAI	GTCTC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
BspACI	CCGC	5 cut(s)	138, 140, 173, 299, 319
BspANI	GGCC	1 cut(s)	102
BspDI	ATCGAT	2 cut(s)	416, 420
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	138, 280
BssMI	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	20, 137
BstKTI	GATC	6 cut(s)	97, 196, 241, 349, 376, 420
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	140
Bsu15I	ATCGAT	2 cut(s)	416, 420
BsuRI	GGCC	1 cut(s)	102
BsuTUI	ATCGAT	2 cut(s)	416, 420
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	148
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	2 cut(s)	20, 137
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	141
ClaI	ATCGAT	2 cut(s)	416, 420
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	11, 350, 365
CviJI	RGCY	6 cut(s)	102, 158, 262, 369, 381, 405
CviKI_1	RGCY	6 cut(s)	102, 158, 262, 369, 381, 405
CviQI	GTAC	1 cut(s)	146
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	6 cut(s)	96, 195, 240, 348, 375, 419
DpnII	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	242
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
FaeI	CATG	3 cut(s)	14, 353, 368
FaiI	YATR	5 cut(s)	12, 351, 366, 449, 451
FatI	CATG	3 cut(s)	10, 349, 364
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	449
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	2 cut(s)	19, 136
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	3 cut(s)	202, 219, 406
HhaI	GCGC	2 cut(s)	20, 137
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	14, 353, 368
Hin6I	GCGC	2 cut(s)	18, 135
HinP1I	GCGC	2 cut(s)	18, 135
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	4 cut(s)	70, 79, 122, 222
HpaII	CCGG	3 cut(s)	202, 219, 406
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	127, 284
Hpy188III	TCNNGA	6 cut(s)	58, 219, 242, 266, 350, 400
Hpy99I	CGWCG	3 cut(s)	37, 78, 95
HpyAV	CCTTC	3 cut(s)	283, 368, 406
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	4, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	14, 353, 368
HspAI	GCGC	2 cut(s)	18, 135
KasI	GGCGCC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	218
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	60, 127
LpnPI	CCDG	8 cut(s)	71, 80, 167, 215, 232, 251, 419, 457
MaeII	ACGT	1 cut(s)	294
MalI	GATC	6 cut(s)	96, 195, 240, 348, 375, 419
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
MboII	GAAGA	2 cut(s)	326, 353
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	325, 435
Mly113I	GGCGCC	1 cut(s)	135
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	3 cut(s)	202, 219, 406
MspR9I	CCNGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
NlaIII	CATG	3 cut(s)	14, 353, 368
NlaIV	GGNNCC	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	309
PfeI	GAWTC	4 cut(s)	70, 79, 122, 222
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	139
Ple19I	CGATCG	1 cut(s)	420
PluTI	GGCGCC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	420
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	9
SacII	CCGCGG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	6 cut(s)	94, 193, 238, 346, 373, 417
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	5 cut(s)	180, 249, 264, 297, 462
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	325, 435
SsiI	CCGC	5 cut(s)	138, 140, 173, 299, 319
SspDI	GGCGCC	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	7 cut(s)	35, 73, 90, 243, 384, 416, 420
TasI	AATT	2 cut(s)	325, 435
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	4 cut(s)	70, 79, 122, 222
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TspDTI	ATGAA	3 cut(s)	327, 353, 438
TspGWI	ACGGA	2 cut(s)	21, 91
VpaK11BI	GGWCC	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.