Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8388101.1

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Reverse (-)

306 .. 650

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8388101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgtctttcagaaggcaaggctcttcagggtttgtgtgggatgacaggttcttgtccggagagctaaagcaacaacaaccagcacaagaccaagaaagctctgaggagaatgagattgtcatagttaaggatgttaagccactgaggccaatcaagactgtacaacgaagcagatccaacggcggaggacgcggctaccggagctctgggaagatctcgccggctattgaaccaccgtcgccaaaggtctctgcatgtgggttttgtgggggtttcggtaaatcctccaagaacaatgcggttcggggagcaaagcctggcaagcgtagccgatcacgttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666

Protein Analysis

114

Amino Acids

12.46

Weight (kDa)

10.43

Isoelectric Point (pI)

87.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	56
AciI	CCGC	3 cut(s)	183, 192, 299
AclWI	GGATC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	316
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	3 cut(s)	64, 99, 204
AluI	AGCT	3 cut(s)	64, 99, 204
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	253
BglI	GCCNNNNNGGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	56, 198
Bse118I	RCCGGY	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	46, 136
BseMII	CTCAG	2 cut(s)	93, 134
BseRI	GAGGAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	57, 199, 221
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp13I	TCCGGA	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	173, 213, 332
BspACI	CCGC	3 cut(s)	183, 192, 299
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	94, 135
BspEI	TCCGGA	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	220
BssMI	GATC	3 cut(s)	173, 213, 332
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	160, 237
Bst6I	CTCTTC	1 cut(s)	28
BstAUI	TGTACA	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	222, 323
BstDEI	CTNAG	2 cut(s)	102, 143
BstF5I	GGATG	2 cut(s)	46, 136
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	3 cut(s)	176, 216, 335
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	3 cut(s)	173, 213, 332
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 189, 201, 322, 327
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	173, 213
BstYI	RGATCY	2 cut(s)	173, 213
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	46, 136
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	222, 323
Cfr10I	RCCGGY	1 cut(s)	220
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	1 cut(s)	255
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	102, 143
DpnI	GATC	3 cut(s)	175, 215, 334
DpnII	GATC	3 cut(s)	173, 213, 332
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	1 cut(s)	258
FaiI	YATR	2 cut(s)	122, 256
FatI	CATG	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	2 cut(s)	53, 143
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	3 cut(s)	57, 199, 221
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	258
HpaII	CCGG	3 cut(s)	57, 199, 221
Hpy188I	TCNGA	2 cut(s)	11, 103
Hpy188III	TCNNGA	2 cut(s)	57, 154
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	2 cut(s)	160, 237
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 189, 201, 322, 327
HpyF3I	CTNAG	2 cut(s)	102, 143
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	173, 213, 332
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	201, 308
LpnPI	CCDG	9 cut(s)	12, 31, 70, 93, 192, 212, 234, 303, 330
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	3 cut(s)	175, 215, 334
MboI	GATC	3 cut(s)	173, 213, 332
MboII	GAAGA	2 cut(s)	15, 223
MflI	RGATCY	2 cut(s)	173, 213
MhlI	GDGCHC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	97, 138, 179, 295
MroI	TCCGGA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	220
MseI	TTAA	2 cut(s)	126, 135
MspI	CCGG	3 cut(s)	57, 199, 221
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	145, 189, 201, 322, 327
NaeI	GCCGGC	1 cut(s)	222
NdeII	GATC	3 cut(s)	173, 213, 332
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	258
NspI	RCATGY	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	173, 213
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	126, 135
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	3 cut(s)	173, 213, 332
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	6 cut(s)	50, 66, 101, 206, 249, 340
SsiI	CCGC	3 cut(s)	183, 192, 299
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	160, 237
TaiI	ACGT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	1 cut(s)	195
Tru1I	TTAA	2 cut(s)	126, 135
Tru9I	TTAA	2 cut(s)	126, 135
TscAI	CASTG	1 cut(s)	147
TspRI	CASTG	1 cut(s)	147
XceI	RCATGY	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.