Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Reverse (-)

49595051 .. 49597525

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGAAACCTCTTGTTGTTGAGGTGAAATCTGAATCGTTGGAGCCTGTTGCAGGGGATCATGAGGTGGTGGAGAAACCTAATTCTTCAAAGGAAGAGATGGAAGAGGTTGTTGATGTGACAGATTCAATGGAGGAAGTAGTGGATGTTTGTGAGTTTCCTGGTTCACTTGAGTTGGTTCCTAATCCGATTGAGGAACCTATACACAGACATGACTACGCTGACAGCGTTCCGTCGAACGAACGGGTGGCGGTGCTCCAAATTCGCCAGAATCGACTGAATCAACGGCTCTACGATCTCGGCCTTGTTCAATCGGCAGAGGAATTGGAGCATGACGCCGCTGATGTACTCGTTAGGCCTCTGGAGATTATTGCGAAGGTTCTGGCAGTTGAGGATCATCTCCAGGAGAACTTTACCTTGGGAATCTGTCTTGTTAATGATCTCGAGGTAGAGGAGGAGAAGCTTCTGGACAGTGTGGTCCTCGAAGGGGAGGACGTAGCGGATAATTATGATGAAGAGCTGGGGAATTGTGTCGCCGTTGAGCAAGATCATGATTGCCTTCTTCATGGCTTCGATCTTGGCTTCGACATCGTTTCCTTCGAGAGCTGGAGACTATCGATCGGTTCTTGTCCTAGATGGGTGCCCAGCCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.46

Weight (kDa)

4.18

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	640
AciI	CCGC	3 cut(s)	251, 339, 500
AclWI	GGATC	2 cut(s)	66, 402
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	53, 487
AgsI	TTSAA	3 cut(s)	90, 129, 311
AjnI	CCWGG	2 cut(s)	160, 402
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	3 cut(s)	463, 520, 606
AluI	AGCT	3 cut(s)	463, 520, 606
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	604
AlwI	GGATC	2 cut(s)	66, 402
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	301, 356
ApoI	RAATTY	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	16, 37
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	2 cut(s)	94, 630
BceAI	ACGGC	2 cut(s)	302, 521
BciT130I	CCWGG	2 cut(s)	162, 404
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	1 cut(s)	633
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	162, 404
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	4 cut(s)	45, 180, 198, 642
BmrFI	CCNGG	2 cut(s)	162, 404
BpmI	CTGGAG	3 cut(s)	383, 386, 628
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 487
BseBI	CCWGG	2 cut(s)	162, 404
BseCI	ATCGAT	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	53, 487
BseRI	GAGGAG	2 cut(s)	467, 470
BseSI	GKGCMC	1 cut(s)	645
BseYI	CCCAGC	2 cut(s)	520, 644
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	303, 358
BshNI	GGYRCC	1 cut(s)	640
BshVI	ATCGAT	1 cut(s)	617
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	53, 487
BsmAI	GTCTC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	303, 358
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	258, 645
Bsp143I	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
BspACI	CCGC	3 cut(s)	251, 339, 500
BspANI	GGCC	2 cut(s)	303, 358
BspDI	ATCGAT	1 cut(s)	617
BspHI	TCATGA	2 cut(s)	61, 550
BspLI	GGNNCC	4 cut(s)	45, 180, 198, 642
BspPI	GGATC	2 cut(s)	66, 402
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	162, 404
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	3 cut(s)	90, 99, 510
BstACI	GRCGYC	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	7 cut(s)	61, 298, 397, 442, 550, 577, 621
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
BstMCI	CGRYCG	1 cut(s)	621
BstNI	CCWGG	2 cut(s)	162, 404
BstSCI	CCNGG	2 cut(s)	160, 402
BstSLI	GKGCMC	1 cut(s)	645
Bsu15I	ATCGAT	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	303, 358
BsuTUI	ATCGAT	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	478
CciI	TCATGA	2 cut(s)	61, 550
Cfr13I	GGNCC	1 cut(s)	478
ClaI	ATCGAT	1 cut(s)	617
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	6 cut(s)	62, 212, 332, 551, 566, 650
CviQI	GTAC	1 cut(s)	347
DpnI	GATC	7 cut(s)	60, 297, 396, 441, 549, 576, 620
DpnII	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
DrdI	GACNNNNNNGTC	1 cut(s)	476
DseDI	GACNNNNNNGTC	1 cut(s)	476
Eam1104I	CTCTTC	3 cut(s)	90, 99, 510
EarI	CTCTTC	3 cut(s)	90, 99, 510
Eco130I	CCWWGG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	443
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	160, 402
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	6 cut(s)	65, 215, 335, 554, 569, 653
FaiI	YATR	8 cut(s)	63, 203, 213, 333, 510, 552, 567, 651
FatI	CATG	6 cut(s)	61, 211, 331, 550, 565, 649
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	2 cut(s)	524, 648
GsuI	CTGGAG	3 cut(s)	383, 386, 628
HaeIII	GGCC	2 cut(s)	303, 358
HgaI	GACGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	6 cut(s)	65, 215, 335, 554, 569, 653
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	5 cut(s)	35, 125, 271, 280, 423
HphI	GGTGA	2 cut(s)	16, 37
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	34, 189
Hpy188III	TCNNGA	6 cut(s)	62, 362, 443, 467, 551, 601
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	4 cut(s)	370, 479, 569, 607
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	6 cut(s)	65, 215, 335, 554, 569, 653
Kzo9I	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	3 cut(s)	43, 261, 328
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	7 cut(s)	60, 297, 396, 441, 549, 576, 620
MboI	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
MboII	GAAGA	5 cut(s)	78, 107, 116, 527, 554
MhlI	GDGCHC	2 cut(s)	258, 645
MluCI	AATT	5 cut(s)	82, 261, 323, 505, 526
MmeI	TCCRAC	1 cut(s)	21
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	162, 404
MvaI	CCWGG	2 cut(s)	162, 404
NdeII	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
NlaIII	CATG	6 cut(s)	65, 215, 335, 554, 569, 653
NlaIV	GGNNCC	4 cut(s)	45, 180, 198, 642
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	443
PagI	TCATGA	2 cut(s)	61, 550
PceI	AGGCCT	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	3 cut(s)	225, 271, 597
PfeI	GAWTC	5 cut(s)	35, 125, 271, 280, 423
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	340
Ple19I	CGATCG	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	160, 402
PspFI	CCCAGC	2 cut(s)	520, 644
PspGI	CCWGG	2 cut(s)	160, 402
PspN4I	GGNNCC	4 cut(s)	45, 180, 198, 642
PspPI	GGNCC	1 cut(s)	478
PvuI	CGATCG	1 cut(s)	621
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	7 cut(s)	58, 295, 394, 439, 547, 574, 618
Sau96I	GGNCC	1 cut(s)	478
ScrFI	CCNGG	2 cut(s)	162, 404
SduI	GDGCHC	2 cut(s)	258, 645
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	170, 443
SmoI	CTYRAG	2 cut(s)	170, 443
Sse9I	AATT	5 cut(s)	82, 261, 323, 505, 526
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	251, 339, 500
SspMI	CTAG	1 cut(s)	633
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	160, 402
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	8 cut(s)	236, 274, 444, 483, 573, 585, 600, 617
TasI	AATT	5 cut(s)	82, 261, 323, 505, 526
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	5 cut(s)	35, 125, 271, 280, 423
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	528, 554
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	478
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	1 cut(s)	261
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.