Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Reverse (-)

70249192 .. 70265154

Gene Structure 15963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG405900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGACGAAACTTACACAACTACTGAAAAAACAGGTGCAGGGCAATGCCAGTGCCAAGCGGTCCTCAGGCTATATGAATTTCAAAAATCATGGCGGCGGCTGTGCTATTTTCTTGGAGGAGTTCCAGGACGCAAACAAGTGTGCAATGCTAGATAAGTGTCAACACACTTTTCATCGTGAATGCCTCCAGAAGTGTTTAACTAAGTCCAATCGTTGTCCCCTCTGTCGTCAAAGTATTAGAGATAGTTGGAGAACTCAGTTGAGATTGGTCACAGCTCTAGATGGTTACAACCATCAGGAAACACATAAGAAGGAAGTTGCCTTCTACAAACGTGAGAAACATAAATTTCCATCCCATCCTATACACAGACATGACTACGCTGACTGTGTTCCGTCGAACGAACGAGTAGCGGTGCTCCAGATTCGCCAGAATCGACTGAATCAACGGCTCGATGATCTCGGCCTTGTTCAATCGGCAGAGGAATCGGAGCGTGACACCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCGGAGGTTCTGGTAGTTGAGGATCATCTCCGGGAGAACTTTGCCTCGGGAATCTGTCTTGTTAATGATCTCGAGGTAGAGGAGGAGAAGCTTCTGGACGGTGTGGTCCTCGAAGGGGAGGACATAGCGGATAATTGTGATGAAGAGCTGGGGAATTGTGTCGCCGTTGAGCAAGATCATGATTGCCTTCTTCATGGCTTCGATCTTGGCTTCGACGGATGCTGTGATAAGTGGGAGGGATTGAGACTCAATCTCTTGCTCTTTGGTCTCCACCGTCTCTTGCTCTCTAGCGCAGAGATAGGCCAGGTTGCAGACAACACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

285

Amino Acids

32.36

Weight (kDa)

5.46

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	34 - 76	6.4e-10	Ring finger domain
zf-C3HC4_2	PF13923	34 - 75	5.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	42 - 76	3.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	635
AccII	CGCG	1 cut(s)	500
AciI	CCGC	8 cut(s)	58, 93, 96, 410, 498, 500, 533, 659
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	76, 344
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	2 cut(s)	82, 470
AjnI	CCWGG	2 cut(s)	123, 834
AluBI	AGCT	3 cut(s)	275, 622, 679
AluI	AGCT	3 cut(s)	275, 622, 679
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	3 cut(s)	769, 803, 812
AlwI	GGATC	1 cut(s)	561
Ama87I	CYCGRG	2 cut(s)	577, 602
AoxI	GGCC	2 cut(s)	460, 832
ApoI	RAATTY	2 cut(s)	76, 344
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	2 cut(s)	60, 637
AsuC2I	CCSGG	1 cut(s)	563
AvaI	CYCGRG	2 cut(s)	577, 602
AvaII	GGWCC	2 cut(s)	60, 637
AxyI	CCTNAGG	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	417
BccI	CCATC	4 cut(s)	275, 300, 358, 363
BceAI	ACGGC	2 cut(s)	461, 680
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BciT130I	CCWGG	2 cut(s)	125, 836
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	3 cut(s)	769, 803, 812
BfaI	CTAG	3 cut(s)	149, 278, 819
BisI	GCNGC	2 cut(s)	94, 97
BlsI	GCNGC	2 cut(s)	95, 98
Bme1390I	CCNGG	3 cut(s)	125, 563, 836
Bme18I	GGWCC	2 cut(s)	60, 637
BmeT110I	CYCGRG	2 cut(s)	577, 602
BmgT120I	GGNCC	2 cut(s)	60, 637
BmrFI	CCNGG	3 cut(s)	125, 563, 836
BmsI	GCATC	1 cut(s)	740
BpmI	CTGGAG	3 cut(s)	170, 401, 542
BpuMI	CCSGG	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	2 cut(s)	498, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	1 cut(s)	48
Bse21I	CCTNAGG	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	49, 150
BseBI	CCWGG	2 cut(s)	125, 836
BseDI	CCNNGG	2 cut(s)	498, 576
BseGI	GGATG	4 cut(s)	350, 355, 508, 755
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	2 cut(s)	49, 150
BseMII	CTCAG	2 cut(s)	78, 269
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	3 cut(s)	131, 626, 629
BseYI	CCCAGC	1 cut(s)	679
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	462, 834
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	2 cut(s)	577, 602
BsiSI	CCGG	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	3 cut(s)	769, 803, 812
BsmBI	CGTCTC	1 cut(s)	812
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	462, 834
Bso31I	GGTCTC	1 cut(s)	803
BsoBI	CYCGRG	2 cut(s)	577, 602
Bsp1286I	GDGCHC	2 cut(s)	417, 520
Bsp143I	GATC	5 cut(s)	454, 553, 598, 706, 733
BspACI	CCGC	8 cut(s)	58, 93, 96, 410, 498, 500, 533, 659
BspANI	GGCC	2 cut(s)	462, 834
BspCNI	CTCAG	2 cut(s)	77, 268
BspFNI	CGCG	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	709
BspPI	GGATC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	803
BsrDI	GCAATG	2 cut(s)	49, 150
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	498, 576
BssMI	GATC	5 cut(s)	454, 553, 598, 706, 733
Bst2UI	CCWGG	2 cut(s)	125, 836
Bst4CI	ACNGT	3 cut(s)	386, 632, 806
Bst6I	CTCTTC	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	64, 201, 255
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	4 cut(s)	350, 355, 508, 755
BstFNI	CGCG	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	5 cut(s)	457, 556, 601, 709, 736
BstMAI	GTCTC	3 cut(s)	769, 803, 812
BstMBI	GATC	5 cut(s)	454, 553, 598, 706, 733
BstNI	CCWGG	2 cut(s)	125, 836
BstSCI	CCNGG	3 cut(s)	123, 561, 834
BstUI	CGCG	1 cut(s)	500
Bsu36I	CCTNAGG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	462, 834
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	4 cut(s)	350, 355, 508, 755
BtsIMutI	CAGTG	1 cut(s)	55
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	2 cut(s)	60, 637
Cfr42I	CCGCGG	1 cut(s)	501
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	4 cut(s)	89, 371, 710, 725
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	3 cut(s)	64, 201, 255
DpnI	GATC	5 cut(s)	456, 555, 600, 708, 735
DpnII	GATC	5 cut(s)	454, 553, 598, 706, 733
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	803
Eco47I	GGWCC	2 cut(s)	60, 637
Eco81I	CCTNAGG	1 cut(s)	64
Eco88I	CYCGRG	2 cut(s)	577, 602
EcoRII	CCWGG	2 cut(s)	123, 834
EcoT38I	GRGCYC	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	4 cut(s)	92, 374, 713, 728
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	4 cut(s)	88, 370, 709, 724
Fnu4HI	GCNGC	2 cut(s)	94, 97
FokI	GGATG	4 cut(s)	337, 342, 515, 762
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	2 cut(s)	94, 97
FspBI	CTAG	3 cut(s)	149, 278, 819
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	2 cut(s)	94, 97
GsaI	CCCAGC	1 cut(s)	683
GsuI	CTGGAG	3 cut(s)	170, 401, 542
HaeIII	GGCC	2 cut(s)	462, 834
HapII	CCGG	1 cut(s)	562
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	824
Hin1II	CATG	4 cut(s)	92, 374, 713, 728
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	6 cut(s)	421, 430, 439, 482, 582, 777
HpaII	CCGG	1 cut(s)	562
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	487
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	2 cut(s)	397, 749
HpyAV	CCTTC	4 cut(s)	304, 331, 638, 728
HpyCH4III	ACNGT	3 cut(s)	386, 632, 806
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	37, 143, 842
HpyF3I	CTNAG	3 cut(s)	64, 201, 255
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	92, 374, 713, 728
HspAI	GCGC	1 cut(s)	822
KspI	CCGCGG	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	454, 553, 598, 706, 733
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	2 cut(s)	420, 487
LweI	GCATC	1 cut(s)	740
MaeI	CTAG	3 cut(s)	149, 278, 819
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	268, 284, 491
MalI	GATC	5 cut(s)	456, 555, 600, 708, 735
MboI	GATC	5 cut(s)	454, 553, 598, 706, 733
MboII	GAAGA	2 cut(s)	686, 713
MhlI	GDGCHC	2 cut(s)	417, 520
MluCI	AATT	4 cut(s)	76, 344, 664, 685
MlyI	GAGTC	1 cut(s)	771
MmeI	TCCRAC	1 cut(s)	227
MseI	TTAA	2 cut(s)	197, 594
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	562
MspR9I	CCNGG	3 cut(s)	125, 563, 836
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	125, 836
MvnI	CGCG	1 cut(s)	500
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	5 cut(s)	454, 553, 598, 706, 733
NlaIII	CATG	4 cut(s)	92, 374, 713, 728
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	268, 491
PaeR7I	CTCGAG	1 cut(s)	602
PagI	TCATGA	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	5 cut(s)	421, 430, 439, 482, 582
PfoI	TCCNGGA	2 cut(s)	123, 561
PkrI	GCNGC	2 cut(s)	95, 98
PleI	GAGTC	1 cut(s)	771
PpsI	GAGTC	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	123, 834
PspFI	CCCAGC	1 cut(s)	679
PspGI	CCWGG	2 cut(s)	123, 834
PspPI	GGNCC	2 cut(s)	60, 637
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	369
SacII	CCGCGG	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	197, 594
SatI	GCNGC	2 cut(s)	94, 97
Sau3AI	GATC	5 cut(s)	454, 553, 598, 706, 733
Sau96I	GGNCC	2 cut(s)	60, 637
SchI	GAGTC	1 cut(s)	771
ScrFI	CCNGG	3 cut(s)	125, 563, 836
SduI	GDGCHC	2 cut(s)	417, 520
SetI	ASST	8 cut(s)	36, 277, 334, 540, 609, 624, 681, 840
SfaNI	GCATC	1 cut(s)	740
Sfr274I	CTCGAG	1 cut(s)	602
Sfr303I	CCGCGG	1 cut(s)	501
SgrBI	CCGCGG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	60, 637
SlaI	CTCGAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	4 cut(s)	76, 344, 664, 685
SsiI	CCGC	8 cut(s)	58, 93, 96, 410, 498, 500, 533, 659
SspMI	CTAG	3 cut(s)	149, 278, 819
StyD4I	CCNGG	3 cut(s)	123, 561, 834
TaaI	ACNGT	3 cut(s)	386, 632, 806
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	7 cut(s)	395, 433, 450, 603, 642, 732, 744
TasI	AATT	4 cut(s)	76, 344, 664, 685
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	2 cut(s)	96, 99
TfiI	GAWTC	5 cut(s)	421, 430, 439, 482, 582
Tru1I	TTAA	2 cut(s)	197, 594
Tru9I	TTAA	2 cut(s)	197, 594
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	268, 491
Tsp45I	GTSAC	2 cut(s)	268, 491
TspDTI	ATGAA	4 cut(s)	89, 161, 687, 713
TspGWI	ACGGA	2 cut(s)	381, 762
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	60, 637
XapI	RAATTY	2 cut(s)	76, 344
XbaI	TCTAGA	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	602
XspI	CTAG	3 cut(s)	149, 278, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.